New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	1415327 =	35 (0.670)	3 (0.060)	3/252	NT	7.5%	coding (600/888 nt)	dapA‑I	4‑hydroxy‑tetrahydrodipicolinate synthase
	?	NC_002947	1415401 =	41 (0.830)					coding (674/888 nt)	dapA‑I	4‑hydroxy‑tetrahydrodipicolinate synthase

GCCTGTCGACCGTGCCGAACATCATCGGCATCAAGGAAGCCACGGGCGACCTGGCCCGCGCCAAGGCCATTCTCGATGGCGTCAGCAAGGACTTCATCGTCATGTCCGGCGACGACCCGACTGCCGTCGAGCTGATCCTGATGGGCGGCAAGGGCAACATCTCCGTCACCGCCAACGTCGCTCCGCGCGAAATGGCGGACCTGTGCGAGGCCGCCCTTGAGGGCAATGCCGAGAAGGCCCGCGCAATCAACGAAAAACTCATGCCGCTGCACAAGGACCTGTTCTGCGA  >  NC_002947/1415185‑1415473                                                                                                                                               |                                                                                                                                                   gCCTGTCGACCGTGCCGAACATCATCGGCATCAAGGAAGCCACGGGCGACCTGGCCCGCGCCAAGGCCATTCTCGATGGCGTCAGCAAGGACTTCATCGTCATGTCCGGCGACGACCCGACTGCCGTCGAGCTGATCCTGATGggcgg                                                                                                                                               >  5:75392/1‑148 (MQ=255)  gcaggcgaatacctttttgcatcaggcccatttcgacgagcgcccatttcaccgggatcgggttggactcgcagaacaggtccttgtgcagcggcatgagtttttcgttgattgcgcgggccttctcggcattgccctcaaGggcggc                                                                                                                                              >  5:37747‑M1/142‑148 (MQ=255)      tCGACCGTGCCGAACATCATCGGCATCAAGGAAGCCACGGGCGACCTGGCCCGCGCCAAGGCCATTCTCGATGGCGTCAGCAAGGACTTCATCGTCATGTCCGGCGACGACCCGACTGCCGTCGAGCTGATCCTGATGGGCGGCAAggg                                                                                                                                         >  6:329806/1‑149 (MQ=255)         aCCGTGCCGAACATCATCGGCATCAAGGAAGCCACGGGCGACCTGGCCCGCGCCAAGGCCATTCTCGATGGCGTCAGCAAGGACTTCATCGTCATGTCCGGCGACGACCCGACTGCCGTCGAGCTGATCCTGATGGGCGGCAAGGGCaa                                                                                                                                      <  3:231463/149‑1 (MQ=255)              gCCGAACATCATCGGCATCAAGGAAGCCACGGGCGACCTGGCCCGCGCCAAGGCCATTCTCGATGGCGTCAGCAAGGACTTCATCGTCATGTCCGGCGACGACCCGACTGCCGTCGAGCTGATCCTGATGGGCGGCAAGGGCAACAtct                                                                                                                                 <  2:36311/149‑1 (MQ=255)                cGAACATCATCGGCATCAAGGAAGCCACGGGCGACCTGGCCCGCGCCAAGGCCATTCTCGATGGCGTCAGCAAGGACTTCATCGTCATGTCCGGCGACGACCCGACTGCCGTCGAGCTGATCCTGATGGGCGGCAAGGGCAACATCTcc                                                                                                                               <  7:22513/149‑1 (MQ=255)                  aaCATCATCGGCATCAAGGAAGCCACGGGCGACCTGGCCCGCGCCAAGGCCATTCTCGATGGCGTCAGCAAGGACTTCATCGTCATGTCCGGCGACGACCCGACTGCCGTCGAGCTGATCCTGATGGGCGGCAAGGGCAACATCTCCGt                                                                                                                             <  5:329806/149‑1 (MQ=255)                        ataggCATCAAGGAAGCCACGGGCGACCTGGCCCGCGCCAAGGCCATTCTCGATGGCGTCAGCAAGGACTTCATCGTCATGTCCGGCTACGACCCGACTGCCGTCGAGCTGATACTGATGGGCGGCAAGGGAAACATATCCGTCACCGc                                                                                                                       >  4:69129/4‑149 (MQ=255)                              aTCAAGGAAGCCACGGGCGACCTGGCCCGCGCCAAGGCCATTCTCGATGGCGTCAGCAAGGACTTCATCGTCATGTCCGGCGACGACCCGACTGCCGTCGAGCTGATCCTGATGGGCGGCAAGGGCAACATCTCCGTCACCGCCAACGt                                                                                                                 >  6:283005/1‑149 (MQ=255)                                  aGGAAGCCACGGGCGACCTGGCCCGCGCCAAGGCCATTCTCGATGGCGTCAGCAAGGACTTCATCGTCATGTCCGGCGACGACCCGACTGCCGTCGAGCTGATCCTGATGGGCGGCAAGGGCAACATCTCCGTCACCGCCAACGTCGCt                                                                                                             >  8:288052/1‑149 (MQ=255)                                         cACGGGCGACCTGGCCCGCGCCAAGGCCATTCTCGATGGCGTCAGCAAGGACTTCATCGTCATGTCCGGCGACGACCCGACTGCCGTCGAGCTGATCCTGATGGGCGGCAAGGGCAACATATCCGTAACCGCCAACGTCGCTCagcgc                                                                                                       >  4:196222/1‑148 (MQ=255)                                            gggCGACCTGGCCCGCGCCAAGGCCATTCTCGATGGCGTCAGCAAGGACTTCATCGTCATGTCCGGCGACGACCCGACTGCCGTCGAGCTGATCCTGATGGGCGGCAAGGGCAACATCTCCGTCACCGCCAACGTCGCTCCGCGCGaaa                                                                                                   >  6:309978/1‑149 (MQ=255)                                                      gCCCGCGCCAAGGCCATTCTCGATGGCGTCAGCAAGGACTTCATCGTCATGTCCGGCGACGACCCGACTGCCGTCGAGCTGATCCTGATGGGCGGCAAGGGCAACATCTCCGTCACCGCCAACGTCGCTCCGCGCGAAATGGCGGAc                                                                                           <  6:75392/147‑1 (MQ=255)                                                         cgcgCCAAGGCCATTCTCGATGGCGTCAGCAAGGACTTCATCGTCATGTCCGGCGACGACCCGACTGCCGTCGAGCTGATCCTGATGGGCGGCAAGGGCAACATCTCCGTCACAGCCAACGTCGCTCCGCGCGAAATGGCGGACCtgtg                                                                                      >  6:280723/1‑149 (MQ=255)                                                           tcgggttggactcgcagaacaggtccttgtgcagcggcatgagtttttcgttgattgcgcgggccttctcggcattgccatcaaGGGCGGCAAGGGCAACATCTCCGTCACCGCCAAAGTCGCTCCGAGCGAAATGGCGGACCTGTGc                                                                                     <  5:150211‑M1/64‑1 (MQ=255)                                                            gcCAAGGCCATTCTCGATGGCGTCAGCAAGGACTTCATCGTCATGTCCGGCGACGACCCGACTGCCGTCGAGCTGATCCTGATGGGCGGCAAGGGCAACATCTCCGTCACCGCCAACGTCGCTCCGCGCGAAATGGCGGACCTGTGCGa                                                                                   <  6:179222/149‑1 (MQ=255)                                                              cAAGGCCATTCTCGATGGCGTCAGCAAGGACTTCATCGTCATGTCCGGCGACGACCCGACTGCCGTCGAGCTGATCCTGATGGGCGGCAAGGGCAACATCTCCGTCACCGCCAACGTCGCTCCGCGCGAAATGGCGGACCTGTGCGAgg                                                                                 >  5:22708/1‑149 (MQ=255)                                                                 ggCCATTCTCGATGGCGTCAGCAAGGACTTCATCGTCATGTCCGGCGACGACCCGACTGCCGTCGAGCTGATCCTGATGGGCGGCAAGGGCAACATCTCCGTCACCGCCAACGTCGCTCCGCGCGAAATGGCGGAc                                                                                           <  2:265597/136‑1 (MQ=255)                                                                 ggCCATTCTCGATGGCGTCAGCAAGGACTTCATCGTCATGTCCGGCGACGACCCGACTGCCGTCGAGCTGAACCTGATGGGCGGCAAGGGCAACATCTCCGTCACCGCCAACGTCGCTCCGCGCGAAATGGCGGAc                                                                                           >  1:265597/1‑136 (MQ=255)                                                                    cATTCTCGATGGCGTCAGCAAGGACTTCATCGTCATGTCCGGCGACGACCCGACTGCCGTCGAGCTGATCCTGATGGGCGGCAAGGGCAACATCTCCGTCACCGCCAACGTCGCTCCGCGCGAAATGGCGGACCTGTGCGAGGCCGccc                                                                           <  5:24283/149‑1 (MQ=255)                                                                         cagaacaggtccttgtgcagcggcatgagtttttcgttgattgcgcgggccttctcggcattgccctcaaGGGCGGCAAGGGCAACATCTCCGTCACCGCCAACGTCGCTCCGCGCGAAATGGCGGACCTGTGCGAGGCCGCCCTTGAg                                                                      >  4:108904‑M1/71‑149 (MQ=255)                                                                          agaacatggccttgtgcagcgtcatgagtttttctttgattgcgcgggccttatcggcattgccctcaaGGGCGGCAAGGGCAACATCTCCGTCACCGCCAACGTCGATCCGCGCGAAATGGCGGACCTGTGCGAGGCAGCCCTTGAgg                                                                     >  6:150211‑M1/70‑149 (MQ=255)                                                                                     gCAAGGACTTCATCGTCATGTCCGGCGACGACCCGACTGCCGTCGAGCTGATCCTGATGGGCGGCAAGGGCAACATCTCCGTCACCGCCAACGTCGCTCCGCGCGAAATGGCGGACCTGTGCGAGGCCGCCCTTGAGGGCAATGcc                                                             >  7:276803/1‑146 (MQ=255)                                                                                       aaGGACTTCATCGTCATGTCCGGCGACGACCCGACTGCCGTCGAGCTGATCCTGATGGGCGGCAAGGGCAACATCTCCGTCACCGCCAACGTCGCTCCGCGCGAAATGGCGGACCTGTGCGAGGCCGCCCTTGAGGGCAATGcc                                                             >  7:11309/1‑144 (MQ=255)                                                                                       aaGGACTTCATCGTCATGTCCGGCGACGACCCGACTGCCGTCGAGCTGATCCTGATGGGCGGCAAGGGCAACATCTCCGTCACCGCCAACGTCGCTCCGCGCGAAATGGCGGACCTGTGCGAGGCCGCCCTTGAGGGCAATGcc                                                             <  8:11309/144‑1 (MQ=255)                                                                                        aGGACTTCATCGTCATGTCCGGCGACGACCCGACTGCCGTCGAGCTGATCCTGATGGGCGGCAAGGGCAACATCTCCGTCACCGCCAACGTCGCTCCGCGCGAAATGGCGGACCTGTGCGAGGCCGCCCTTGAGGGCAATGCCGAGAAg                                                       >  6:204979/1‑149 (MQ=255)                                                                                         ggACTTCATCGTCATGTCCGGCGACGACCCGACTGCCGTCGAGCTGATCCTGATGGGCGGCAAGGGCAACATCTCCGTCACCGCCAACGTCGCTCCGCGCGAAATGGCGGACCTGTGCGAGGCCGCCCTTGAGGGCAATGCCGAGaa                                                        <  2:240969/147‑1 (MQ=255)                                                                                         ggACTTCATCGTCATGTCCGGCGACGACCCGACTGCCGTCGAGCTGATCCTGATGGGCGGCAAGGGCAACATCTCCGTCACCGCCAACGTCGCTCCGCGCGAAATGGCGGACCTGTGCGAGGCCGCCCTTGAGGGCAATGCCGAGaa                                                        >  1:240969/1‑147 (MQ=255)                                                                                         ggACTTCATCGTCATGTCCGGCGACGACCCGACTGCCGTCGAGCTGATCCTGATGGGCGGCAAGGGCAACATCTCCGTCACCGCCAACGTCGCTCCGCGCGAAATGGCGGACCTGTGCGAGGCCGCCCTTGAGGGCAATGCCGAGAAgg                                                      >  3:216086/1‑149 (MQ=255)                                                                                                    tCATGTCCGGCGACGACCCGACTGCCGTCGAGCTGATCCTGATGGGCGGCAAGGGCAACATCTCCGTCACCGCCAACGTCGCTCCGCGCGAAATGGCGGACCTGTGCGAGGCCGCCCTTGAGGGCAATGCCGAGAAGGCCCGCGCAAt                                            >  5:306852/1‑148 (MQ=255)                                                                                                       tGTCCGGCGACGACCCGACTGCCGTCGAGCTGATCCTGATGGGCGGCAAGGGCAACATCTCCGTCACCGCCAACGTCGCTCCGCGCGAAATGGCGGACCTGTGCGAGGCCGCCCTTGAGGGCAATGCCGAGAAGGCCCGCGCAATCAAc                                        <  5:204979/149‑1 (MQ=255)                                                                                                           cGGCGACGACCCGACTGCCGTCGAGCTGATCCTGATGGGCGGCAAGGGCAACATCTCCGTCACCGCCAACGTCGCTCCGCGCGAAATGGCGGACCTGTGCGAGGCCGCCCTTGAGGGCAATGCCGAGAAGGCCCGCGCAATCAACGaa                                     >  8:110162/1‑148 (MQ=255)                                                                                                                   acCCGACTGCCGTCGAGCTGATCCTGATGGGCGGCAAGGGCAACATCTCCGTCACCGCCAACGTCGCTCCGCGCGAAATGGCGGACCTGTGCGAGGCCGCCCTTGAGGGCAATGCCGAGAAGGCCCGCGCAATCAACGAAAAACTCATg                            <  4:216086/149‑1 (MQ=255)                                                                                                                    cccGACTGCCGTCGAGCTGATCCTGATGGGCGGCAAGGGCAACATCTCCGTCACCGCCAACGTCGCTCCGCGCGAAATGGCGGACCTGTGCGAGGCCGCCCTTGAGGGCAATGCCGAGAAGGCCCGCGCAATCAACGAAAAACTCATGc                           <  6:22708/149‑1 (MQ=255)                                                                                                                            ccGTCGAGCTGATCCTGATGGGCGGCAAGGGCAACATCTCCGTCACCGCCAACGTCGCTCCGCGCGAAATGGCGGACCTGTGCGAGGCCGCCCTTGAGGGCAATGCCGAGAAGGCCCGCGCAATCAACGAAAAACTCATGCCGCTGca                    >  5:96299/1‑148 (MQ=255)                                                                                                                                 gAGCTGATCCTGATGGGCGGCAAGGGCAACATCTCCGTCACCGCCAACGTCGCTCCGCGCGAAATGGCGGACCTGTGCGAGGCCGCCCTTGAGGGCAATGCCGAGAAGGCCCGCGCAATCAACGAAAAACTCATGCCGCTGCACAAGGa              <  6:306852/149‑1 (MQ=255)                                                                                                                                  aGCTTATCCTGATGGGCGGCAAGGGCAACATCTCCGTCACCGCCAACGTCGCTCCGCGCGAAATGGCGGACCTGTGCGAGGCCGCCCTTGAGGGCAATGCCGAGAAGGCCCGCGCAATCAACGAAAAACTCATGCCGCTGCACAAGGAc             <  6:96299/149‑1 (MQ=255)                                                                                                                                  aGCTGATCCTGATGGTCGGCAAGGGCAACATCTCCGTCACCGCCAACGTCGCTCCGCGCGAAATGGCGGACCTGTGCGAGGCCGCCCTTGAGGGCAATGCCGAGAAGGCCCGCGCAATCAACGAAAAACTCATGCCGCTGCACAAGGAc             <  3:69129/149‑1 (MQ=255)                                                                                                                                       aTCCTGATGGGCGGCAAGGGCAACATCTCCGTCACCGCCAACGTCGCTCCGCGCGAAATGGCGGACCTGTGCGAGGCCGCCCTTGAGGGCAATGCCGAGAAGGCCCGCGCAATCAACGAAAAACTCATGCCGCTGCACAAGGACCTGtt        <  5:283005/149‑1 (MQ=255)                                                                                                                                          cTGATGGGCGGCAAGGGCAACATCTCCGTCACCGCCAACGTCGCTCCGCGCGAAATGGCGGACCTGTGCGAGGCCGCCCTTGAGGGCAATGCCGAGAAGGCCCGCGCAATCAACGAAAAACTCATGCCGCTGCACAAGGACCTGTTCt      <  8:276803/148‑1 (MQ=255)                                                                                                                                             aTGGGCGGCAAGGGCAACATCTCCGTCACCGCCAACGTCGCTCCGCGCGAAATGGCGGACCTGTGCGAGGCCGCCCTTGAGGGCAATGCCGAGAAGGCCCGCGCAATCAACGAAAAACTCATGCCGCTGCACAAGGACCTGTTCTGCGa  <  7:110162/149‑1 (MQ=255)                                                                                                                                               |                                                                                                                                                   GCCTGTCGACCGTGCCGAACATCATCGGCATCAAGGAAGCCACGGGCGACCTGGCCCGCGCCAAGGCCATTCTCGATGGCGTCAGCAAGGACTTCATCGTCATGTCCGGCGACGACCCGACTGCCGTCGAGCTGATCCTGATGGGCGGCAAGGGCAACATCTCCGTCACCGCCAACGTCGCTCCGCGCGAAATGGCGGACCTGTGCGAGGCCGCCCTTGAGGGCAATGCCGAGAAGGCCCGCGCAATCAACGAAAAACTCATGCCGCTGCACAAGGACCTGTTCTGCGA  >  NC_002947/1415185‑1415473

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.