| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_002947 | 1607679 = | 29 (0.560) | 5 (0.100) | 5/252 | NT | 15.3% | intergenic (‑146/+198) | PP_1408/rsuA | (R)‑3‑hydroxydecanoyl‑ACP:CoA transacylase/16S rRNA pseudouridine(516) synthase |
| ? | NC_002947 | 1607722 = | 28 (0.570) | intergenic (‑189/+155) | PP_1408/rsuA | (R)‑3‑hydroxydecanoyl‑ACP:CoA transacylase/16S rRNA pseudouridine(516) synthase | |||||
TCACATTACTTACCGAACGGCACTTGCGCGATCCCCAACCCACTGCTTGAATCCAAATCGTCAGTCTGCATGTGACTACCAAGTCACACCTGCAGCCGATGACACTTTTTGCCGGCCACCCAAAGCCTAGATGCCTTGGGGCACGGCAAA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_002947/1607828‑1607679‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cggcaaaAAGTGTCATCGGCTGCAGGTGTGACTTGGTAGTCACATGCAGACTGACGATTTGGATTCAAGCAGTGGGTTGGGGATCGCGCAAGTGCCGTTCGGTAAGTAATGTGACTTTTGTCGCTGAGCGGTCGTATGACGACACGGGCTGTCT > NC_002947/1607722‑1607868 TCACATTACTTACCGAACGGCACTTGCGCGATCCCCAACCCACTGCTTGAATCCAAAACGTCAGTCTGCATGTGACTACCAAGTCACACCTGCAGCCGATGACACTTTTTGCCGGCCACCCAAAGCCTAGATGCCTTGGGGCACGGCAA < 3:76837/149‑1 CACATTACTTACCGAACGGCACTTGCGCGATCCCCAACCCACTGCTTGAATCCAAATCGTCAGTCTGCATGTGACTACCAAGTCACACCTGCAGACGATGACACTTTTTGCCGGCCACCCAAAGCCTAGATGCCTTGGGGCACGGCAAA > 8:3849/1‑149 ACATTACTTACCGAACGGCACTTGCGCGATCCCCAACCCACTGCTTGAATCCAAATCGTCAGTCTGCATGTGACTACCAAGTCACACCTGCAGCCGATGACACTTTTTGCCGGCCACCCAAAGCCTAGATGCCTTGGGGCACGGCAAA < 4:172430/148‑1 CTTTTTGCCGGCCACCCAAAGCCTAGATGCCTTGGGGCACGGCAATAAGTGTCATCGGCTGCAGGTGTGGCTTGGTAGTCACATGCAGACTGACGATTTGGATTCAAGCAGTGGGTTGGGGATCGCGCAAGTGCCGTTCGGTAAGTAAT > 7:14804/1‑149 TTTTTGCCGGCCACCCAAAGCCTAGATGCCTTGGGGCACGGCAAAAAGTGTCATCGGCTGCAGGTGTGACTTGGTAGTCACATGCAGACTGACGATTTGGATTCAAGCAGTGGGTTGGGGA < 7:96320/121‑1 TTTTTGCCGGCCACCCAAAGCCTAGATGCCTTGGGGCACGGCAAAAAGTGTCATCGGCTGCAGGTGTGACTTGGTAGTCACATGCAGACTGACGATTTGGATTCAAGCAGTGGGTTGGGGA > 8:96320/1‑121 TTTTGCCGGCCACCCAAAGCCTAGATGCCTTGGGGCACGGCAAAAAGTGTCATCGGCTGCAGGTGTGACTTGGTAGTCACATGCAGACTGACGATTTGGATTCAAGCAGTGGGTTGGGGATCGCGCAAGTGCCGTTCGGTAAGTAATGT > 1:259004/1‑149 CTTGGGGCACGGCAAAAAGTGTCATCGGCTGCAGGTGTGGCTTGGTAGTCACATGCAGACTGACGATTTGGATTCAAGCAGTGGGTTGGGGATCGCGCAAGTGCCGTTCGGTAAGTAATGTGACTTTTGTCGCTGAGCGGTCGTATGAC < 8:14804/149‑1 AAAAAGTGTCATCGGCTGCAGGTGTGACTTGGTAGTCACATGCAGACTGACGATTTGGATTCAAGCAGTGGGTTGGGGATCGCGCAAGTGCCGTTCGGTAAGTAATGTGACTTTTGTCGCTGAGCGGTCGTATGACGACACGGGCTGTC > 3:39468/1‑149 AAAAAGTGTCATCGGCTGCAGGTGTGACTTGGTAGTCACATGCAGACTGACGATTTGGATT < 7:14901/61‑1 AAAAAGTGTCATCGGCTGCAGGTGTGACTTGGTAGTCACATGCAGACTGACGATTTGGATT > 8:14901/1‑61 AAAAGTGTCATCGGCTGCAGGTGTGACTTGGTAGTCACATGCAGACTGACGATTTGGATTCAAGCAGTGGGTTGGGGATCGCGCAAGTGCCGTTCGGTAAGTAATGTGACTTTTGTCGCTGAGCGGTCGTATGACGACACGGGCTGTCT < 1:83980/149‑1 TCACATTACTTACCGAACGGCACTTGCGCGATCCCCAACCCACTGCTTGAATCCAAATCGTCAGTCTGCATGTGACTACCAAGTCACACCTGCAGCCGATGACACTTTTTGCCGGCCACCCAAAGCCTAGATGCCTTGGGGCACGGCAAA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_002947/1607828‑1607679‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cggcaaaAAGTGTCATCGGCTGCAGGTGTGACTTGGTAGTCACATGCAGACTGACGATTTGGATTCAAGCAGTGGGTTGGGGATCGCGCAAGTGCCGTTCGGTAAGTAATGTGACTTTTGTCGCTGAGCGGTCGTATGACGACACGGGCTGTCT > NC_002947/1607722‑1607868 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |