New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	1607679 =	29 (0.560)	5 (0.100)	5/252	NT	15.3%	intergenic (‑146/+198)	PP_1408/rsuA	(R)‑3‑hydroxydecanoyl‑ACP:CoA transacylase/16S rRNA pseudouridine(516) synthase
	?	NC_002947	1607722 =	28 (0.570)					intergenic (‑189/+155)	PP_1408/rsuA	(R)‑3‑hydroxydecanoyl‑ACP:CoA transacylase/16S rRNA pseudouridine(516) synthase

AGGGTGCACGTTCTTTATGACAGGTAGGCATTTGCCTGAAGATAATCCGGGGGCCCTGTGTCGATCCTTGGCACTTGCGTCGACGGTATTGTTTTTGGCGGGCAATTTGCCGTGCCCCAAGGCATCTAGGCTTTGGGTGGCCGGCAAAAAGTGTCATCGGCTGCAGGTGTGACTTGGTAGTCACATGCAGACTGACGATTTGGATTCAAGCAGTGGGTTGGGGATCGCGCAAGTGCCGTTCGGTAAGTAATGTGACTTTTGTCGCTGAGCGGTCGTATGACGACACGGGCTGTCTGT  >  NC_002947/1607574‑1607870                                                                                                                                                     |                                                                                                                                                     acattacttaccgaacggcacttgcgcgatccccaacccactgcttgaatccaaatcgtcagtctgcatgtgactaccaagtcacacctgcagccgatgacacttTTTGCCGTGCCCCAAGGCATCTAGGCTTTGGGTGGCCGGCaaaa                                                                                                                                                      >  1:259004‑M1/106‑149 (MQ=255)   attacttaccgaacggcacttgcgcgatccccaacccactgcttgaatccaaatcgtcagtctgcatgtgactaccaagccacacctgcagccgatgacacttATTGCCGTGCCCCAAGGCATCTAGGCTTTGGGTGGCCGGCAAAAAg                                                                                                                                                    >  7:14804‑M1/104‑149 (MQ=255)          gTTCTTTATGACAGGTAGGCATTTGCCTGAAGATAATCCGGGGGCCCTGTGTCGATCCTTGGCACTTGCGTCGACGGTATTGTTTTTGGCGGGCAATTTGCCGTGCCCCAAGGCATCTAGGCTTTGGGTGGCCGGCAAAAAGTGTCATc                                                                                                                                             <  5:69709/149‑1 (MQ=255)                  ttaCAGTTAGGCATTTGCCTGAAGATAATCCGGTGGCCCTGTGTCGATCCTTGGCACTTGCGTCGACGGTATTGTTTTTGGCGGGCAATTTGCCGTGCCCCAAGGCATCTAGGCTTTGGGTGGCCGGCAAAAAGTGTCATCGGCTGCa                                                                                                                                      <  8:117253/146‑1 (MQ=255)                  tGACAGGTAGGCATTTGCCTGAAGATAATCCGGGGGCCCTGTGTCGATCCTTGGCACTTGCGTCGACGGTATTGTTTTTGGCGGGCAATTTGCCGTGCCCCAAGGCATCTAGGCTTTGGGTGGCCGGCAAAAAGTGTCATCGGCTGCAg                                                                                                                                     <  8:303829/149‑1 (MQ=255)                      aGGTAGGCATTTGCCTGAAGATAATCCGGGGGCCCTGTGTCGATCCTTGGCACTTGCGTCGACGGTATTGTTTTTGGCGGGCAATTTGCCGTGCCCCAAGGCATCTAGGCTTTGGGTGGCCGGCAAAAAGTGTCATCGGCTGCAGgtgt                                                                                                                                 <  3:284647/149‑1 (MQ=255)                        gTAGGCATTTGCCTGAAGATAATCCGGGGGCCCTGTGTCGATCCTTGGCACTTGCGTCGACGGTATTGTTTTTGGCGGGCAATTTGCCGTGCCCCAAGGCATCTAGGCTTTGGGTGGCCGGCAAAAAGTGTCATCGGCTGCAGGTGTGa                                                                                                                               >  8:12264/1‑149 (MQ=255)                           ggCATTTGCCTGAAGATAATCCGGGGGCCCTGTGTCGATCCTTGGCACTTGCGTCGACGGTATTGTTTTTGGCGGGCAATTTGCCGTGCCCCAAGGCATCTAGGCTTTGGGTGGCCGGCAAAAAGTGTCATCGGCTGAAGGTGTGACtt                                                                                                                            >  7:3849/1‑149 (MQ=255)                              tccccaacccactgcttgaatccaaatcgtcagtctgcatgtgactaccaagtcacacctgcagccgatgacacttTTTGCCGTGCCCCAAGGCATCTAGGCTTTGGGTGGCCGGCaaaaa                                                                                                                                                     >  8:96320‑M1/77‑121 (MQ=255)                              tccccaacccactgcttgaatccaaatcgtcagtctgcatgtgactaccaagtcacacctgcagccgatgacacttTTTGCCGTGCCCCAAGGCATCTAGGCTTTGGGTGGCCGGCaaaaa                                                                                                                                                     <  7:96320‑M1/45‑1 (MQ=255)                                   ccTGAAGATAATCCGGGGGCCCTGTGTTGATCCTTGGCACTTGCGTCGACGGTATTGTTTTTGGCGGGCAATTTGCCGTGCCCCAAGGCATCTAGGCTTTGGGTGGCCGGCAAAAAGTGTCATCGGCTGCAGGTGTGACTTGGTAGTca                                                                                                                    >  2:296034/1‑149 (MQ=255)                                   ccTGAAGATAATCCGGGGGCCCTGTGTCGATCCTTGGCACTTGCGTCGACGGTATTGTTTTTGGCGGGCAATTTGCCGTGCCCCAAGGCATCTAGGCTTTGGGTGGCCGGCAAAAAGTGTCATCGGCTGCAGGTGTGACTTGGTAGTca                                                                                                                    <  5:307626/149‑1 (MQ=255)                                    cTGAAGATAATCCGGGGGCCCTGTGTCGATCCTTGGCACTTGCGTCGACGGTATTGTTTTTGGCGGGCAATTTGCCGTGCCCCAAGGCATCTAGGCTTTGGGTGGCCGGCAAAAAGTGTCATCGGCTGCAGGTGTGACTTGGTAGTca                                                                                                                    >  3:82330/1‑148 (MQ=255)                                       aaGATAATCCGGGGGCCCTGTGTCGATCCTTGGCACTTGCGTCGACGGTATTGTTTTTGGCGGGCAATTTGCCGTGCCCCAAGGCATCTAGGCTTTGGGTGGCCGGCAAAAAGTGTCATCGGCTGCAGGTGTGACTTGGTAGTCACAt                                                                                                                 <  7:12264/148‑1 (MQ=255)                                        aGATAATCCGGGGGCCCTGTGTCGATCCTTGGCACTTGCGTCGACGGTATTGTTTTTGGCGGGCAATTTGCCGTGCCCCAAGGCATCTAGGCTTTGGGTGGCCGGCAAAAAGTGTCATCGGCTGCAGGTGTGACTTGGTAGTCACATg                                                                                                                >  3:110969/1‑148 (MQ=255)                                              tCCGGGGGCCCTGTGTCGATCCTTGGCACTTGCGTCGACGGTATTGTTTTTGGCGGGCAATTTGCCGTGCCCCAAGGCATCTAGGCTTTGGGTGGCCGGCAAAAAGTGTCATCGGCTGCAGGTGTGACTTGGTAGTCACATGCAGACTg                                                                                                         >  6:19973/1‑149 (MQ=255)                                                cgtgggCGCTGGGTCTCTCCTTGGCACTTGCGTCGACGGTATTGTTGTTGGCGGGGAATTTGCCGTGCCCCAAGGCATGTAGGCTGTGGGTGTCCGGCAAAAAGTGTCATCGGCTGCAGGTGTGACTTGGTAGTCACATGCAGACTGa                                                                                                        <  4:47014/145‑1 (MQ=255)                                                                       gCACTTGCGTCGACGGTATTGTTTTTGGCGGGCAATTTGCCGTGCCCCAAGGCATCTAGGCTTTGGGTGGCCGGCAAAAAGTGTCATCGGCTGCAGGTGTGACTTGGTAGTCACATGCAGACTGACGATTTGGATTCAAGCAGTGGGtt                                                                                <  4:82330/149‑1 (MQ=255)                                                                               gTCGACGGTATTGTTTTTGGCGGGCAATTTGCCGTGCCCCAAGGCATCTAGGCTTTGGGTGGCCGGCAAAAAGTGTCATCGGCTGCAGGTGTGACTTGGTAGTCACATGCAGACTGACGATTTGGATTCAAGCAGTGGGTTGGGGATcg                                                                        >  2:103564/1‑149 (MQ=255)                                                                               gTCGACGGTATTGTTTTTGGCGGGCAATTTGCCGTGCCCCAAGGCATCTAGGCTTTGGGTGGCCGGCAAAAAGTGTCATCGGCTGCAGGTGTGACTTGGTAGTCACATGCAGACTGACGATTTGGATTCAAGCAGTGGGTTGGGGATcg                                                                        <  1:304070/149‑1 (MQ=255)                                                                               gTCGACGGTATTGTTTTTGGCGGGCAATTTGCCGTGCCCCAAGGCATCTAGGCTTTGGGTGGCCGGCAAAAAGTGTCATCGGCTGCAGGTGTGACTTGGTAGTCACATGCAGACTGACGATTTGGATTCAAGCAGTGGGTTGGGGATcg                                                                        >  4:228475/1‑149 (MQ=255)                                                                                           gTTTTTGGCGGGCAATTTGCCGTGCCCCAAGGCATCTAGGCTTTGGGTGGCCGGCAAAAAGTGTCATCGGCTGCAGGTGTGACTTGGTAGTCACATGCAGACTGACGATTTGGATTCAAGCAGTGGGTTGGGGATCGCGCAAGTGCCGt                                                            >  1:189506/1‑149 (MQ=255)                                                                                            tttttGGCGGGCAATTTGCCGTGCCCCAAGGCATCTAGGCTTTGGGTGGCCGGCAAAAAGTGTCATCGGCTGCAGGTGTGACTTGGTAGTCACATGCAGACTGACGATTTGGATTCAAGCAGTGGGTTGGGGATCGCGCAAGTGCCGtt                                                           >  5:128255/1‑149 (MQ=255)                                                                                               ttGGCGGGCAATTTGCCGTGCCCCAAGGCATCTAGGCTTTGGGTGGCCGGCAAAAAGTGTCATCGGCTGCAGGTGTGACTTGGTAGTCACATGCAGACTGACGATTTGGATTCAAGCAGTGGGTTGGGGATCGCGCAAGTGCCGTTCg                                                         <  3:228475/148‑1 (MQ=255)                                                                                                       ctttttgccggccacccaaagcctagatgccttggggcacggcaatAAGTGTCATCGGCTGCAGGTGTGGCTTGGTAGTCACATGCAGACTGACGATTTGGATTCAAGCAGTGGGTTGGGGATCGCGCAAGTGCCGTTCGGTAAGTAAt                                                >  7:14804‑M2/47‑149 (MQ=255)                                                                                                        tttttgccggccacccaaagcctagatgccttggggcacggcaaaAAGTGTCATCGGCTGCAGGTGTGACTTGGTAGTCACATGCAGACTGACGATTTGGATTCAAGCAGTGGGTTGGGGa                                                                           >  8:96320‑M2/46‑121 (MQ=255)                                                                                                        tttttgccggccacccaaagcctagatgccttggggcacggcaaaAAGTGTCATCGGCTGCAGGTGTGACTTGGTAGTCACATGCAGACTGACGATTTGGATTCAAGCAGTGGGTTGGGGa                                                                           <  7:96320‑M2/76‑1 (MQ=255)                                                                                                         ttttgccggccacccaaagcctagatgccttggggcacggcaaaAAGTGTCATCGGCTGCAGGTGTGACTTGGTAGTCACATGCAGACTGACGATTTGGATTCAAGCAGTGGGTTGGGGATCGCGCAAGTGCCGTTCGGTAAGTAAtgt                                              >  1:259004‑M2/45‑149 (MQ=255)                                                                                                          TTTGCCGTGCCCCAAGGCATCTAGGCTTTGGGTGGCCGGCAAAAAGTGTCATCGTCTGCAGGTGTGACTTGGTAGTCACATGCAGACTGACGATTTGGATTCAAGCAGTGGGTTGGGGATCGCGCAAGTGCCGTTCGGTAAGTAAtgtg                                             >  8:3849‑M1/1‑149 (MQ=255)                                                                                                          TTTGCCGTGCCCCAAGGCATCTAGGCTTTGGGTGGCCGGCAAAAAGTGTCATCGGCTGCAGGTGTGACTTGGTAGTCACATGCAGACTGACGATTTGGATTCAAGCAGTGGGTTGGGGATCGCGCAAGTGCCGTTCGGTAAGTAAtgt                                              <  4:172430‑M1/148‑1 (MQ=255)                                                                                                           TTGCCGTGCCCCAAGGCATCTAGGCTTTGGGTGGCCGGCAAAAAGTGTCATCGGCTGCAGGTGTGACTTGGTAGTCACATGCAGACTGACGTTTTGGATTCAAGCAGTGGGTTGGGGATCGCGCAAGTGCCGTTCGGTAAGTAATGTGa                                            <  3:76837‑M1/149‑1 (MQ=255)                                                                                                                     ccAAGGCATCTAGGCTTTGGGTGGCCGGCAAAAAGTGTCATCGGCTGCAGGTGTGACTTGGTAGTCACATGCAGACTGACGATTTGGATTCAAGCAGTGGGTTGGGGATCGCGCAAGTGCCGTTCGGTAAGTAATGTGACTTTTGTCGc                                  >  5:289695/1‑149 (MQ=255)                                                                                                                     ccAAGGCATCTAGGCTTTGGGTGGCCGGCAAAAAGTGTCATCGGCTGCAGGTGTGACTTGGTAGTCACATGCAGACTGACGATTTGGATTCAAGCAGTGGGTTGGGGATCGCGCAAGTGCCGTTCGGTAAGTAATGTGACTTTTGTCGc                                  >  3:109557/1‑149 (MQ=255)                                                                                                                      cAAGGCATCTAGGCTTTGGGTGGCCGGCAAAAAGTGTCATCGGCTGCAGGTGTGACTTGGTAGTCACATGCAGACTGACGATTTGGATTCAAGCAGTGGGTTGGGGATCGCGCAAGTGCCGTTCGGTAAGTAATGTGACTTTTGTCGCt                                 >  3:274226/1‑149 (MQ=255)                                                                                                                        aGGCATCTAGGCTTTGGGTGGCCGGCAAAAAGTGTCATCGGCTGCAGGTGTGACTTGGTAGTCACATGCAGACTGACGATTTGGATTCAAGCAGTGGGTTGGGGATCGCGCAAGTGCCGTTCGGTAAGTAATGTGACTTTTGTCGCTGa                               <  4:110969/149‑1 (MQ=255)                                                                                                                            aTCTAGGCTTTGGGTGGCCGGCAAAAAGTGTCATCGGCTGCAGGTGTGACTTGGTAGTCACATGCAGACTGACGATTTGGATTCAAGCAGTGGGTTGGGGATCGCGCAAGTGCCGTTCGGTAAGTAATGTGACtttt                                       <  4:278837/137‑1 (MQ=255)                                                                                                                            aTCTAGGCTTTGGGTGGCCGGCAAAAAGTGTCATCGGCTGCAGGTGTGACTTGGTAGTCACATGCAGACTGACGATTTGGATTCAAGCAGTGGGTTGGGGATCGCGCAAGTGCCGTTCGGTAAGTAATGTGACtttt                                       >  3:278837/1‑137 (MQ=255)                                                                                                                                 ggCTTTGGGTGGCCGGCAAAAAGTGTCATCGGCTGCAGGTGTGACTTGGTAGTCACATGCAGACTGACGATTTGGATTCAAGCAGTGGGTTGGGGATCGCGCAAGTGCCGTTCGGTAAGTAATGTGACTTTTGTCGCTGAGCGGTCga                       <  4:274226/148‑2 (MQ=255)                                                                                                                                    tttGGGTGGCCGGCAAAAAGTGTCATCGGCTGCAGGTGTGACTTGGTAGTCACATGCAGACTGACGATTTGGATTCAAGCAGTGGGTTGGGGATCGCGCAAGTGCCGTTCGGTAAGTAATGTGACTTTTGTCGCTGAGCGGTCGTATga                   >  5:113780/1‑149 (MQ=255)                                                                                                                                     cttggggcacggcaaaAAGTGTCATCGGCTGCAGGTGTGGCTTGGTAGTCACATGCAGACTGACGATTTGGATTCAAGCAGTGGGTTGGGGATCGCGCAAGTGCCGTTCGGTAAGTAATGTGACTTTTGTCGCTGAGCGGTCGTATgac                  <  8:14804‑M2/133‑1 (MQ=255)                                                                                                                                         gTGGCCGGCAAAAAGTGTCATCGGCTGCAGGTGTGACTTGGTAGTCACATGCAGACTGACGATTTGGATTCTAGCAGTGGGTTGGGGATCGCGCAAGTGCCGTTCGGTAAGTAATGTGACTTTTGTCGCTGAGCGGTCGTATGACGaca              <  1:103564/149‑1 (MQ=255)                                                                                                                                                  aaaAAGTGTCATCGGCTGCAGGTGTGACTTGGTAGTCACATGCAGACTGACGATTTGGAtt                                                                                             >  8:14901‑M2/4‑61 (MQ=255)                                                                                                                                                  aaaAAGTGTCATCGGCTGCAGGTGTGACTTGGTAGTCACATGCAGACTGACGATTTGGAtt                                                                                             <  7:14901‑M2/58‑1 (MQ=255)                                                                                                                                                  aaaAAGTGTCATCGGCTGCAGGTGTGACTTGGTAGTCACATGCAGACTGACGATTTGGATTCAAGCAGTGGGTTGGGGATCGCGCAAGTGCCGTTCGGTAAGTAATGTGACTTTTGTCGCTGAGCGGTCGTATGACGACACGGGctgtc     >  3:39468‑M2/4‑149 (MQ=255)                                                                                                                                                   aaAAGTGTCATCGGCTGCAGGTGTGACTTGGTAGTCACATGCAGACTGACGATTTGGATTCAAGCAGTGGGTTGGGGATCGCGCAAGTGCCGTTCGGTAAGTAATGTGACTTTTGTCGCTGAGCGGTCGTATGACGACACGGGctgtct    <  1:83980‑M2/147‑1 (MQ=255)                                                                                                                                                     aaGTGTCATCGGCTGCAGGTGTGACTTGGTAGTCACATGCAGACTGACGATTTGGATTCAAGCAGTGGGTTGGGGATCGCGCAAGTGCCGTTCGGTAAGTAATGTGACTTTTGTCGCTGAGCGGTCGTATGACGACACGGGctgtctgt  <  1:296034/149‑1 (MQ=255)                                                                                                                                                     |                                                                                                                                                     AGGGTGCACGTTCTTTATGACAGGTAGGCATTTGCCTGAAGATAATCCGGGGGCCCTGTGTCGATCCTTGGCACTTGCGTCGACGGTATTGTTTTTGGCGGGCAATTTGCCGTGCCCCAAGGCATCTAGGCTTTGGGTGGCCGGCAAAAAGTGTCATCGGCTGCAGGTGTGACTTGGTAGTCACATGCAGACTGACGATTTGGATTCAAGCAGTGGGTTGGGGATCGCGCAAGTGCCGTTCGGTAAGTAATGTGACTTTTGTCGCTGAGCGGTCGTATGACGACACGGGCTGTCTGT  >  NC_002947/1607574‑1607870

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.