New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	1607679 =	29 (0.560)	5 (0.100)	5/252	NT	15.3%	intergenic (‑146/+198)	PP_1408/rsuA	(R)‑3‑hydroxydecanoyl‑ACP:CoA transacylase/16S rRNA pseudouridine(516) synthase
	?	NC_002947	1607722 =	28 (0.570)					intergenic (‑189/+155)	PP_1408/rsuA	(R)‑3‑hydroxydecanoyl‑ACP:CoA transacylase/16S rRNA pseudouridine(516) synthase

ATGTCATCGACTCCTGGCGCAAAAAGGGTATTCGCGTCACCTAGGGTGCACGTTCTTTATGACAGGTAGGCATTTGCCTGAAGATAATCCGGGGGCCCTGTGTCGATCCTTGGCACTTGCGTCGACGGTATTGTTTTTGGCGGGCAATTTGCCGTGCCCCAAGGCATCTAGGCTTTGGGTGGCCGGCAAAAAGTGTCATCGGCTGCAGGTGTGACTTGGTAGTCACATGCAGACTGACGATTTGGATTCAAGCAGTGGGTTGGGGATCGCGCAAGTGCCGTTCGGTAAGTAATGTG  >  NC_002947/1607532‑1607827                                                                                                                                                    |                                                                                                                                                     agacagcccgtgtcgtcatacgaccgctcagcgacaaaagtcacattacttaccgaacggcacttgcgcgatccccaacccactgcttgaatccaaatcgtcagtctgcatgtgactaccaagtcacacctgcagccgatgacactttt                                                                                                                                                     <  1:83980‑M1/2‑1 (MQ=255)  gacagcccgtgtcgtcatacgaccgctcagcgacaaaagtcacattacttaccgaacggcacttgcgcgatccccaacccactgcttgaatccaaatcgtcagtctgcatgtgactaccaagtcacacctgcagccgatgacacttttt                                                                                                                                                    >  3:39468‑M1/147‑149 (MQ=255)   gtcgtcGAGTCCTGGGGGAAAAAGGGGATACGCGTCTGCTAGGGTGCGCGAGCTTTATGACAGGTAGGCATTTGCCTGCAGATAGTCCGGGGGCGCTGTGTGGATCCTTGGCAAATGCGTCGACGGTATTGGTTTAGGCGTGCAATTTg                                                                                                                                                   >  6:58768/1‑149 (MQ=255)    tCATCGACTCCTGTCCCAAAAAGGGTATTCGCGTCACCTAGGGTGCACGTTCTTTATGACAGGTAGGCATTTGCCTGAAGATAATCCGGGGGCCCTGTGTCGATCATTGGCACTTGCGTCGACGGTATTGTTTTTGGCTGGCAATTTg                                                                                                                                                   <  4:133170/148‑1 (MQ=255)    tCATCGACTCCTGGCGCAAAAAGGGTATTCGCGTCACCTAGGGTGCACGTTCTTTATGACAGGTAGGCATTTGCCTGAAGATAATCCGGGGGCCCTGTGTCGATCCTTGGCACTTGCGTCGACGGTATTGTTTTTGGCGGGCAATTTg                                                                                                                                                   <  8:276128/148‑1 (MQ=255)       tCGACTCCTGGCGCAAAAAGGGTATTCGCGTCACCTAGGGTGCACGTTCTTTATGACAGGTAGGCATTTGCCTGAAGATAATCCGGGGGCCCTGTGTCGATCCTTGGCACTTGCGTCGACGGTATTGTTTTTGGCGGGCAATTTGCCGt                                                                                                                                               >  2:304070/1‑149 (MQ=255)               tGGCGCAAAAAGGGTATTCGCGTCACCTAGGGTGCACGTTCTTTATGACAGGTAGGCATTTGCCTGAAGATAATCCGGGGGCCCTGTGTCGATCCTTGGCACTTGCGTCGACGGTATTGTTTTTGGCGGGCAATTTGCCGTGCCCCAAg                                                                                                                                       >  7:117253/1‑149 (MQ=255)               gtcatacgaccgctcagcgacaaaagtcacattacttaccgaacggcacttgcgcgatccccaacccactgcttgaatccaaatcgtcagtctgcatgtgactaccaagccacacctgcagccgatgacacttTTTGCCGTGCCCCAAg                                                                                                                                       <  8:14804‑M1/16‑1 (MQ=255)                               ttCGCGTCACCTAGGGTGCACGTTCTTTATGACAGGTAGGCATTTGCCTGAAGATAATCCGGGGGCCCTGTGTCGATCCTTGGCACTTGCGTCGACGGTATTGTTTTTGGCGGGCAATTTGCCGTGCCCCAAGGCATCTAGGCTTTgg                                                                                                                        <  7:145456/148‑1 (MQ=255)                                tCGCGTCACCTAGGGTGCACGTTCTTTATGACAGGTAGGCATTTGCCTGAAGATAATCCGGGGGCCCTGTGTCGATCCTTGGCACTTGCGTCGACGGTATTGTTTTTGGCGGGCAATTTGCCGTGCCCCAAGGCATCTAGGCTTTGGGt                                                                                                                      >  4:284647/1‑149 (MQ=255)                                 cgcgTCACCTAGGGTGCACGTTCTTTATGACAGGTAGGCATTTGCCTGAAGATAATCCGGGGGCCCTGTGTCGATCCTTGGCACTTGCGTCGACGGTATTGTTTTTGGCGGGCAATTTGCCGTGCCCCAAGGCATCTAGGCTTTGGGt                                                                                                                      >  1:117201/1‑148 (MQ=255)                                   cgTCACCTAGGGTGCACGTTCTTTATGACAGGTAGGCATTTGCCTGAAGATAATCCGGGGGCCCTGTGTCGATCCTTGGCACTTGCGTCGACGGTATTGTTTTTGGCGGGCAATTTGCCGTGCCCCAAGGCATCTAGGCTTTGGGTGGc                                                                                                                   <  2:117201/149‑1 (MQ=255)                                       aCCTAGGGTGCACGTTCTTTATGACAGGTAGGCATTTGCCTGAAGATAATCCGGGGGCCCTGTGTCGATCCTTGGCACTTGCGTCGACGGTATTGTTTTTGGCGGGCAATTTGCCGTGCCCCAAGGCATCTAGGCTTTGGGTGGCCgg                                                                                                                <  6:146555/148‑1 (MQ=255)                                           acattacttaccgaacggcacttgcgcgatccccaacccactgcttgaatccaaatcgtcagtctgcatgtgactaccaagtcacacctgcagccgatgacacttTTTGCCGTGCCCCAAGGCATCTAGGCTTTGGGTGGCCGGCaaaa                                                                                                           >  1:259004‑M1/106‑149 (MQ=255)                                             attacttaccgaacggcacttgcgcgatccccaacccactgcttgaatccaaatcgtcagtctgcatgtgactaccaagccacacctgcagccgatgacacttATTGCCGTGCCCCAAGGCATCTAGGCTTTGGGTGGCCGGCAAAAAg                                                                                                         >  7:14804‑M1/104‑149 (MQ=255)                                                    gTTCTTTATGACAGGTAGGCATTTGCCTGAAGATAATCCGGGGGCCCTGTGTCGATCCTTGGCACTTGCGTCGACGGTATTGTTTTTGGCGGGCAATTTGCCGTGCCCCAAGGCATCTAGGCTTTGGGTGGCCGGCAAAAAGTGTCATc                                                                                                  <  5:69709/149‑1 (MQ=255)                                                            ttaCAGTTAGGCATTTGCCTGAAGATAATCCGGTGGCCCTGTGTCGATCCTTGGCACTTGCGTCGACGGTATTGTTTTTGGCGGGCAATTTGCCGTGCCCCAAGGCATCTAGGCTTTGGGTGGCCGGCAAAAAGTGTCATCGGCTGCa                                                                                           <  8:117253/146‑1 (MQ=255)                                                            tGACAGGTAGGCATTTGCCTGAAGATAATCCGGGGGCCCTGTGTCGATCCTTGGCACTTGCGTCGACGGTATTGTTTTTGGCGGGCAATTTGCCGTGCCCCAAGGCATCTAGGCTTTGGGTGGCCGGCAAAAAGTGTCATCGGCTGCAg                                                                                          <  8:303829/149‑1 (MQ=255)                                                                aGGTAGGCATTTGCCTGAAGATAATCCGGGGGCCCTGTGTCGATCCTTGGCACTTGCGTCGACGGTATTGTTTTTGGCGGGCAATTTGCCGTGCCCCAAGGCATCTAGGCTTTGGGTGGCCGGCAAAAAGTGTCATCGGCTGCAGgtgt                                                                                      <  3:284647/149‑1 (MQ=255)                                                                  gTAGGCATTTGCCTGAAGATAATCCGGGGGCCCTGTGTCGATCCTTGGCACTTGCGTCGACGGTATTGTTTTTGGCGGGCAATTTGCCGTGCCCCAAGGCATCTAGGCTTTGGGTGGCCGGCAAAAAGTGTCATCGGCTGCAGGTGTGa                                                                                    >  8:12264/1‑149 (MQ=255)                                                                     ggCATTTGCCTGAAGATAATCCGGGGGCCCTGTGTCGATCCTTGGCACTTGCGTCGACGGTATTGTTTTTGGCGGGCAATTTGCCGTGCCCCAAGGCATCTAGGCTTTGGGTGGCCGGCAAAAAGTGTCATCGGCTGAAGGTGTGACtt                                                                                 >  7:3849/1‑149 (MQ=255)                                                                        tccccaacccactgcttgaatccaaatcgtcagtctgcatgtgactaccaagtcacacctgcagccgatgacacttTTTGCCGTGCCCCAAGGCATCTAGGCTTTGGGTGGCCGGCaaaaa                                                                                                          <  7:96320‑M1/45‑1 (MQ=255)                                                                        tccccaacccactgcttgaatccaaatcgtcagtctgcatgtgactaccaagtcacacctgcagccgatgacacttTTTGCCGTGCCCCAAGGCATCTAGGCTTTGGGTGGCCGGCaaaaa                                                                                                          >  8:96320‑M1/77‑121 (MQ=255)                                                                             ccTGAAGATAATCCGGGGGCCCTGTGTTGATCCTTGGCACTTGCGTCGACGGTATTGTTTTTGGCGGGCAATTTGCCGTGCCCCAAGGCATCTAGGCTTTGGGTGGCCGGCAAAAAGTGTCATCGGCTGCAGGTGTGACTTGGTAGTca                                                                         >  2:296034/1‑149 (MQ=255)                                                                             ccTGAAGATAATCCGGGGGCCCTGTGTCGATCCTTGGCACTTGCGTCGACGGTATTGTTTTTGGCGGGCAATTTGCCGTGCCCCAAGGCATCTAGGCTTTGGGTGGCCGGCAAAAAGTGTCATCGGCTGCAGGTGTGACTTGGTAGTca                                                                         <  5:307626/149‑1 (MQ=255)                                                                              cTGAAGATAATCCGGGGGCCCTGTGTCGATCCTTGGCACTTGCGTCGACGGTATTGTTTTTGGCGGGCAATTTGCCGTGCCCCAAGGCATCTAGGCTTTGGGTGGc                                                                                                                   <  6:35222/106‑1 (MQ=255)                                                                              cTGAAGATAATCCGGGGGCCCTGTGTCGATCCTTGGCACTTGCGTCGACGGTATTGTTTTTGGCGGGCAATTTGCCGTGCCCCAAGGCATCTAGGCTTTGGGTGGc                                                                                                                   >  5:35222/1‑106 (MQ=255)                                                                              cTGAAGATAATCCGGGGGCCCTGTGTCGATCCTTGGCACTTGCGTCGACGGTATTGTTTTTGGCGGGCAATTTGCCGTGCCCCAAGGCATCTAGGCTTTGGGTGGCCGGCAAAAAGTGTCATCGGCTGCAGGTGTGACTTGGTAGTca                                                                         >  3:82330/1‑148 (MQ=255)                                                                                 aaGATAATCCGGGGGCCCTGTGTCGATCCTTGGCACTTGCGTCGACGGTATTGTTTTTGGCGGGCAATTTGCCGTGCCCCAAGGCATCTAGGCTTTGGGTGGCCGGCAAAAAGTGTCATCGGCTGCAGGTGTGACTTGGTAGTCACAt                                                                      <  7:12264/148‑1 (MQ=255)                                                                                  aGATAATCCGGGGGCCCTGTGTCGATCCTTGGCACTTGCGTCGACGGTATTGTTTTTGGCGGGCAATTTGCCGTGCCCCAAGGCATCTAGGCTTTGGGTGGCCGGCAAAAAGTGTCATCGGCTGCAGGTGTGACTTGGTAGTCACATg                                                                     >  3:110969/1‑148 (MQ=255)                                                                                        tCCGGGGGCCCTGTGTCGATCCTTGGCACTTGCGTCGACGGTATTGTTTTTGGCGGGCAATTTGCCGTGCCCCAAGGCATCTAGGCTTTGGGTGGCCGGCAAAAAGTGTCATCGGCTGCAGGTGTGACTTGGTAGTCACATGCAGACTg                                                              >  6:19973/1‑149 (MQ=255)                                                                                          cgtgggCGCTGGGTCTCTCCTTGGCACTTGCGTCGACGGTATTGTTGTTGGCGGGGAATTTGCCGTGCCCCAAGGCATGTAGGCTGTGGGTGTCCGGCAAAAAGTGTCATCGGCTGCAGGTGTGACTTGGTAGTCACATGCAGACTGa                                                             <  4:47014/145‑1 (MQ=255)                                                                                          aatccaaatcgtcagtctgcatgtgactaccaagtcacacctgcagccgatgacacttttt                                                                                                                                                    <  7:14901‑M1/3‑1 (MQ=255)                                                                                          aatccaaatcgtcagtctgcatgtgactaccaagtcacacctgcagccgatgacacttttt                                                                                                                                                    >  8:14901‑M1/59‑61 (MQ=255)                                                                                                                 gCACTTGCGTCGACGGTATTGTTTTTGGCGGGCAATTTGCCGTGCCCCAAGGCATCTAGGCTTTGGGTGGCCGGCAAAAAGTGTCATCGGCTGCAGGTGTGACTTGGTAGTCACATGCAGACTGACGATTTGGATTCAAGCAGTGGGtt                                     <  4:82330/149‑1 (MQ=255)                                                                                                                         gTCGACGGTATTGTTTTTGGCGGGCAATTTGCCGTGCCCCAAGGCATCTAGGCTTTGGGTGGCCGGCAAAAAGTGTCATCGGCTGCAGGTGTGACTTGGTAGTCACATGCAGACTGACGATTTGGATTCAAGCAGTGGGTTGGGGATcg                             >  4:228475/1‑149 (MQ=255)                                                                                                                         gTCGACGGTATTGTTTTTGGCGGGCAATTTGCCGTGCCCCAAGGCATCTAGGCTTTGGGTGGCCGGCAAAAAGTGTCATCGGCTGCAGGTGTGACTTGGTAGTCACATGCAGACTGACGATTTGGATTCAAGCAGTGGGTTGGGGATcg                             <  1:304070/149‑1 (MQ=255)                                                                                                                         gTCGACGGTATTGTTTTTGGCGGGCAATTTGCCGTGCCCCAAGGCATCTAGGCTTTGGGTGGCCGGCAAAAAGTGTCATCGGCTGCAGGTGTGACTTGGTAGTCACATGCAGACTGACGATTTGGATTCAAGCAGTGGGTTGGGGATcg                             >  2:103564/1‑149 (MQ=255)                                                                                                                                     gTTTTTGGCGGGCAATTTGCCGTGCCCCAAGGCATCTAGGCTTTGGGTGGCCGGCAAAAAGTGTCATCGGCTGCAGGTGTGACTTGGTAGTCACATGCAGACTGACGATTTGGATTCAAGCAGTGGGTTGGGGATCGCGCAAGTGCCGt                 >  1:189506/1‑149 (MQ=255)                                                                                                                                      tttttGGCGGGCAATTTGCCGTGCCCCAAGGCATCTAGGCTTTGGGTGGCCGGCAAAAAGTGTCATCGGCTGCAGGTGTGACTTGGTAGTCACATGCAGACTGACGATTTGGATTCAAGCAGTGGGTTGGGGATCGCGCAAGTGCCGtt                >  5:128255/1‑149 (MQ=255)                                                                                                                                         ttGGCGGGCAATTTGCCGTGCCCCAAGGCATCTAGGCTTTGGGTGGCCGGCAAAAAGTGTCATCGGCTGCAGGTGTGACTTGGTAGTCACATGCAGACTGACGATTTGGATTCAAGCAGTGGGTTGGGGATCGCGCAAGTGCCGTTCg              <  3:228475/148‑1 (MQ=255)                                                                                                                                                    TTTGCCGTGCCCCAAGGCATCTAGGCTTTGGGTGGCCGGCAAAAAGTGTCATCGTCTGCAGGTGTGACTTGGTAGTCACATGCAGACTGACGATTTGGATTCAAGCAGTGGGTTGGGGATCGCGCAAGTGCCGTTCGGTAAGTAAtgtg  >  8:3849‑M1/1‑149 (MQ=255)                                                                                                                                                    TTTGCCGTGCCCCAAGGCATCTAGGCTTTGGGTGGCCGGCAAAAAGTGTCATCGGCTGCAGGTGTGACTTGGTAGTCACATGCAGACTGACGATTTGGATTCAAGCAGTGGGTTGGGGATCGCGCAAGTGCCGTTCGGTAAGTAAtgt   <  4:172430‑M1/148‑1 (MQ=255)                                                                                                                                                    |                                                                                                                                                     ATGTCATCGACTCCTGGCGCAAAAAGGGTATTCGCGTCACCTAGGGTGCACGTTCTTTATGACAGGTAGGCATTTGCCTGAAGATAATCCGGGGGCCCTGTGTCGATCCTTGGCACTTGCGTCGACGGTATTGTTTTTGGCGGGCAATTTGCCGTGCCCCAAGGCATCTAGGCTTTGGGTGGCCGGCAAAAAGTGTCATCGGCTGCAGGTGTGACTTGGTAGTCACATGCAGACTGACGATTTGGATTCAAGCAGTGGGTTGGGGATCGCGCAAGTGCCGTTCGGTAAGTAATGTG  >  NC_002947/1607532‑1607827

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.