| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_002947 | 2082746 = | 41 (0.790) | 3 (0.060) | 3/258 | NT | 6.9% | coding (488/954 nt) | PP_1861 | LysR family transcriptional regulator |
| ? | NC_002947 | 2082808 = | 41 (0.810) | coding (426/954 nt) | PP_1861 | LysR family transcriptional regulator | |||||
ATTGCCGACTTCCTGGTGGCCTACCCGGGACTGGACGTGCAACTGCGGTTGATCGACAGCTTTGTCGACCTGCAGGGCAGCCACCTGGGCGAGGTCGACCTGGTGCTGCGCGCCGGCCCCTTGGCCGACACCCGCCTGGTCGCCACGCC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_002947/2082894‑2082746‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cgccCAGGTGGCTGCCCTGCAGGTCGACAAAGCTGTCGATCAACCGCAGTTGCACGTCCAGTCCCGGGTAGGCCACCAGGAAGTCGGCAATGGCCGGGGCC > NC_002947/2082808‑2082904 ATTGCCGACTTCCTGGTGGCCTACCCGGGACTGGACGTGCAACTGCGGTTGATCGACAGCTTTGTCGACCTGCAGGGCAGCCACCTGGGCGAGGTCGACCTGGTGCTGCGCGCCGGCCCCTTGGCCGACCCCCGCCTGGTCGCCACGCC > 8:117604/1‑149ATTGCCGACTTCCTGGTGGCCTACCCGGGACTGGACGTGCAACTGCGGTTGATCGACAGCTTTGTCGACCTGCAGGGCAGCCACCTGGGCGAGGTCGACCTGGTGCTGCGCGCCGGCCCCTTGGCCGACACCCGCCTGGTCGCCACGCC > 8:73393/1‑149 GCAGCCACCTGGGCGAGGTCGACCTGGTGCTGCGCGCCGGCCCCTTGGCCGACACCCGCCTGGTCGCCACGCCCAGGTGGCTGCCCTGCAGGTCGACAAAGCTGTCGATCAACCGCAGTTGCACGTCCAGTCCCGGGTAGGCCACCAG > 5:74888/1‑148 CTGGGCGAGGTCGCCCTGGTGCTGCGCGCCGGCCCCTTGGCCGACACCCGCCTGGTCGCCACGCCCAGGTGGCTGCCCTGCAGGTCGACAAAGCTGTCGATCAACCGCAGTTGCACGTCCAGTCCCGGGTAGGCCCCCAGGAAGTCGG > 3:197646/1‑148 acgTGGTGCTGCGCGCCGGCCCCTTGGCCGACACCCGCCTGGTCGCCACGCCCAGGTGGCTGCCCTGCAGGTCGACAAAGCTGTCGATCAACCGCAGTTGCACGTCCAGTCCCGGGTAGGCCACCAGGAAGTCGGCAATGGCCGGGGCC < 6:74888/146‑1 ATTGCCGACTTCCTGGTGGCCTACCCGGGACTGGACGTGCAACTGCGGTTGATCGACAGCTTTGTCGACCTGCAGGGCAGCCACCTGGGCGAGGTCGACCTGGTGCTGCGCGCCGGCCCCTTGGCCGACACCCGCCTGGTCGCCACGCC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_002947/2082894‑2082746‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cgccCAGGTGGCTGCCCTGCAGGTCGACAAAGCTGTCGATCAACCGCAGTTGCACGTCCAGTCCCGGGTAGGCCACCAGGAAGTCGGCAATGGCCGGGGCC > NC_002947/2082808‑2082904 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |