New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	2082746 =	41 (0.790)	3 (0.060)	3/258	NT	6.9%	coding (488/954 nt)	PP_1861	LysR family transcriptional regulator
	?	NC_002947	2082808 =	41 (0.810)					coding (426/954 nt)	PP_1861	LysR family transcriptional regulator

GGCCACACTGAAGCGCCAGGCGAACGGCGGCGCCAGGCCATCCCAGTCCAGCCCGTCATGCCCGGGCAGTTCGCTGGGGCAGGTGGGGATGCCGCGGCTGGCCAGGTAGGCGGGGCTGGCGCAGGCGATGCGCACCATGTAGGCGAGCGGCGTGGCGACCAGGCGGGTGTCGGCCAAGGGGCCGGCG‑CGCAGCACCAGGTCGACCTCGCCCAGGTGGCTGCCCTGCAGGTCGACAAAGCTGTCGATCAACCGCAGTTGCACGTCCAGTCCCGGGTAGGCCACCAGGAAGTCGGCAAT  >  NC_002947/2082598‑2082894                                                                                                                                                     |                                                                                                                                                      ggCCACACTGAAGCGCCAGGCGAACGGCGGCGCCAGGCCATCCCAGTCCAGCCCGTCATGCCCGGGCAGTTCGCTGGGGCAGGTGGGGATGCCGCGGCTGGCCAGGTAGGCGGGGCTGGCGCAGGCGATGCGCACCATGTAGGCGAgcg                                                                                                                                                       <  2:139547/149‑1 (MQ=255)   ccACACTGAAGCGCCAGGCGAACGGCGGCGCCAGGCCATCCCAGTCCAGCCCGTCATGCCCGGGCAGTTCGCTGGGGCAGGTGGGGATGCCGCGGCTGGCCAGGTAGGCGGGGCTGGCGCAGGCGATGCGCACCATGTAGGCGAgcggc                                                                                                                                                     <  7:230321/149‑1 (MQ=255)                ccAGGCGAACGGCGGCGCCAGGCCATCCCAGTCCAGCCCGTCATGCCCGGGCAGTTCGCTGGGGCAGGTGGGGATGCCGCGGCTGGCCAGGTAGGCGGGGCTGGCGCAGGCGATGCGCCCCATGTAGGCGAGCGGCGTGGCGACCAGGc                                                                                                                                        >  7:270812/1‑149 (MQ=255)                  aGGCGAACGGCGGCGCCAGGCCATCCCAGTCCAGCCCGTCATGCCCGGGCAGTTCGCTGGGGCAGGTGGGGATGCCGCGGCTGGCCAGGTAGGCGGGGCTGGCGCAGGCGATGCGCACCATGTAGGCGAGCGGCGTGGCGACCAGGCgg                                                                                                                                      <  6:110570/149‑1 (MQ=255)                   ggCGAACGGCGGCGCCAGGCCATCCCAGTCCAGCCCGTCATGCCCGGGCAGTTCGCTGGGGCAGGTGGGGATGCCGCGGCTGGCCAGGTAGGCGGGGCTGGCGCAGGCGATGCGCACCATGTAGGCGAGCGGCGTGGCGACCAGGCggg                                                                                                                                     >  7:129668/1‑149 (MQ=255)                           gcggcgCCAGGCCATCCCAGTCCAGCCCGTCATGCCCGGGCAGTTCGCTGGGGCAGGTGGGGATGCCGCGGCTGGCCAGGTAGGCGGGGCTGGCGCAGGCGATGCGCACCATGTAGGCGAGCGGCGTGGCGACCAGGCGGGTGTCGGc                                                                                                                              >  7:117604/1‑148 (MQ=255)                               cgcCAGTCCATCCCAGTCCAGCCCTGCATGCCCGGGCAGTTCGCTGGGGCAGGTGGGGATGCCGCGGCTGGCCAGGTAGGCGGGGCTGGCGCAGGCGATGCGCACCATGTAGGCGAGCGGCGTGGCGACCAGGCGGGTGTCGGCCAAgg                                                                                                                         <  6:177666/149‑1 (MQ=255)                               cgacAGGCCATACCAGTCCAGCCCGTCATGCCCGGGCAGTTCGCTGGGGCCGGTGGGGATGCCGCGGCTGGCCAGGTAGGCGGGGCTGGCGCAGGCGATGCGCACCATGTAGGCGAGCGGCGTGGCGACCAGGCGGGTGTCGGCCNAgg                                                                                                                         <  6:182086/146‑1 (MQ=255)                                      ccATCCCAGTCCAGCCCGTCATGCCCGGGCAGTTCGCTGGGGCAGGTGGGGATGCCGCGGCTGGCCAGGTAGGCGGGGCTGGCGCAGGCGATGCGCACCATGTAGGCGAGCGGCGTGGCGACCAGGCGGGTGTCGGCCAAGGGGCCGgc                                                                                                                  <  5:88741/149‑1 (MQ=255)                                        aTCCCAGTCCAGCCCGTCATGCCCGGGCAGTTCGCTGGGGCAGGTGGGGATGCCGCGGCTGGCCAGGTAGGCGGGGCTGGCGCAGGCGATGCGCACCATGTAGGCGAGCGGCGTGGCGACCAGGCGGGTGTCGGCCAAGGGGCAGgcg‑c                                                                                                               >  1:152693/1‑149 (MQ=255)                                           ccAGTCCAGCCCGTCATGCCCGGGCAGTTCGCTGGGGCAGGGGGGGATGCCGCGGCTGGCCAGGTAGGCGGGGCTGGCGCAGGCGATGCGCACCATGTAGGCGAGCGGCGTGGCGACCAGGCGGGTGTCGGCCAAGGGGCCGgcg‑cgc                                                                                                             <  3:15390/148‑1 (MQ=255)                                           ccAGTCCAGCCCGGCATGCCCGGGCAGTTCGCTGGGGCAGGTGGGGATGCCGCGGCTGGCCAGGTAGGCGGGGCTGGCGCAGGCGATGCGCACCTTGTAGGCGAGCGGCGTGGCGACCAGGCGGGTGTCGGCCAAGGGGCCGGCG‑Cgca                                                                                                            <  7:223061/149‑1 (MQ=255)                                              gTCCAGCCCGTCATGCCCGGGCAGTTCGCTGGGGCAGGTGGGGATGCCGCGGCTGGCCAGGTAGGCGGGGCTGGCGCAGGCGATGCGCACCATGTAGGCGAGCGGCGTGGCGACCAGGCGGGTGTCGGCCAAGGGGCCGGCG‑Cgcagca                                                                                                         >  3:214537/1‑149 (MQ=255)                                                 cAGCCCGTCATGCCCGGGCAGTTCGCTGGGGCAGGTGGGGATGCCGCGGCTGGCCAGGTAGGCGGGGCTGGCGCAGGCGATGCGCACCATGTAGGCGAGCGGCGTGGCGACCAGGCGGGTGTCGGCCAAGGGGCCGGCG‑CGCAGCAc                                                                                                        >  5:88768/1‑147 (MQ=255)                                                   gCCCGTCATGCCCGGGCAGTTCGCTGGGGCAGGTGGGGATGCCGCGGCTGGCCAGGTAGGCGGGGCTGGCGCAGGCGATGCGCACCATGTAGGCGAGCGGCGTGGCGACCAGGCGGGTGTCGGCCAAGGGGCCGGCG‑CGCAGCACCAgg                                                                                                    >  4:54368/1‑149 (MQ=255)                                                    ggccccggccattgccgacttcctggtggcctacccgggactggacgtgcaactgcggttgatcgacagctttgtcgacctgcagggcagccacctgGGCGTGGCGACCAGGCGGGTGTCGGCCAAGGGGCCGGCG‑CGCAGCaccacgt                                                                                                   <  6:74888‑M1/52‑4 (MQ=255)                                                      cGTCATGCCCGGGCAGTTCGCTGGGGCAGGTGGGGATGCCGCGGCTGGCCAGGTAGGCGGGGCTGGCGCAGGCGATGCGCACCATGTAGGCGAGCGGCGTGGCGACCAGGCGGGTGTCGGCCAAGGGGCCGGCG‑CGCAGCACCAGGTCg                                                                                                 >  4:120049/1‑149 (MQ=255)                                                       gTCATGCCCGGGCAGTTCGCTGGGGCAGGTGGGGATGCCGCGGCTGGCCAGGTAGGCGGGGCTGGCGCAGGCGATGCGCACCATGTAGGCGAGCGGCGTGGCGACCAGGCGGGTGTCGGCCAAGGGGCCGGCG‑CGCAGCACCAGGTCGa                                                                                                >  4:292122/1‑149 (MQ=255)                                                            gCCCGGGCAGTTCGCTGGGGCAGGTGGGGATGCCGCGGCTGGCCAGGTAGGCGGGGCTGGCGCAGGCGATGCGCACCATGTAGGCGAGCGGCGTGGCGACCAGGCGGGTGTCGGCCAAGGGGCCGGCG‑CGCAGCACCAGGTCGACCTCg                                                                                           >  3:113275/1‑149 (MQ=255)                                                            gCCCGGGCAGTTCGCTGGGGCAGGTGGGGATGCCGCGGCTGGCCAGGTAGGCGGGGCTGGCGCAGGCGATGCGCACCATGTAGGCGAGCGGCGTGGCGACCAGGCGGGTGTCGGCCAAGGGGCCGGCG‑CGCAGCACCAGGTCGACCTCg                                                                                           >  6:190169/1‑149 (MQ=255)                                                               cGGGCAGTTCGCTGGGGCAGGTGGGGATGCCGCGGCTGGCCAGGTAGGCGGGGCTGGCGCAGGCGATGCGCACCATGTAGGCGAGCGGCGTGGCGACCAGGCGGGTGTCGGCCAAGGGGCCGGCG‑CGCAGCACCAGGTCGACCTCGccc                                                                                        <  2:306840/149‑1 (MQ=255)                                                                gggCAGTTCGCTGGGGCAGGTGGGGATGCCGCGGCTGGCCAGGTAGGCGGGGCTGGCGCAGGCGATGCGCACCATGTAGGCGAGCGGCGTGGCGACCAGGCGGGTGTCGGCCAAGGGGCCGGCG‑CGCAGCACCAGGTCGACCTCGcc                                                                                         >  8:181939/1‑147 (MQ=255)                                                                gggCAGTTCGCTGGGGCAGGTGGGGATGCCGCGGCTGGCCAGGTAGGCGGGGCTGGCGCAGGCGATGCGCACCATGTAGGCGAGCGGCGTGGCGACCAGGCGGGTGTCGGCCAAGGGGCCGGCG‑CGCAGCACCAGGTCGACCTCGcc                                                                                         >  6:299224/1‑147 (MQ=255)                                                                  ccgacttcctgggggcctacccgggactggacgtgcaactgcggttgatcgacagctttgtcgacctgcagggcagccacctgGGCGTGGCGACCAGGCGGGTGTCGGCCAAGGGGCCGGCG‑CGCAGCACCAGGGCGACCTCGCCCAg                                                                                      >  3:197646‑M1/84‑148 (MQ=255)                                                                   cAGTTCGCTGGGGCAGGTGGGGATGCCGCGGCTGGCCAGGTAGGCGGGGCTGGCGCAGGCGATGCGCACCATGTAGGCGAGCGGCGTGGCGACCAGGCGGGTGTCGGCCAAGGGGCCGGCG‑CGCAGCACCAGGTCGACCTCGCCCAGGt                                                                                    <  6:88768/149‑1 (MQ=255)                                                                     gTTCGCTGGGGCTGGTGGGGATGCCGCGGCTGGCCAGGTAGGCGGGGCTGGCGCAGGCGATGCGCACCATGTAGGCGAGCGGCGTGGCGACCAGGCGGGTGTCGGCCAAGGGGCCGGCG‑CGCAGCACCAGGTCGACCTCGCCCAGGTgg                                                                                  <  2:302148/149‑1 (MQ=255)                                                                     gTTCGCTGGGGCAGGTGGGGATGCCGCGGCTGGCCAGGTAGGCGGGGCTGGCGCAGGCGATGCGCACCATGTAGGCGAGCGGCGTGGCGACCAGGCGGGTGTCGGCCAAGGGGCCGGCG‑CGCAGCACCAGGTCGACCTCGCCCAGGTgg                                                                                  <  4:113275/149‑1 (MQ=255)                                                                        cGCTGGGGCAGGTGGGGATGCCGCGGCTGGCCAGGTAGGCGGGGCTGGCGCAGGCGATGCGCACCATGTAGGCGAGCGGCGTGGCGACCAGGCGGGTGTCGGCCAAGGGGCCGGCG‑CGCAGCACCAGGTCGACCTCGCCCAGGTGGCt                                                                                <  3:292122/148‑1 (MQ=255)                                                                          ctggtggcctacccgggactggacgtgcaactgcggttgatcgacagctttgtcgacctgcagggcagccacctgGGCGTGGCGACCAGGCGGGTGTCGGCCAAGGGGCCGGCG‑CGCAGCACCAGGTCGACCTCGCCCAGGTGGCTGc                                                                              >  5:74888‑M1/76‑148 (MQ=255)                                                                          cTGGGGCAGGTGGGGATGCCGCGGCTGGCCAGGTAGGCGGGGCTGGCGCAGGCGATGCGCACCATGTAGGCGAGCGGCGTGGCGACCAGGCGGGTGTCGGCCAAGGGGCCGGCG‑CGCAGCACCAGGTCGACCTCGCCCAGGTGGCTGcc                                                                             >  5:271263/1‑149 (MQ=255)                                                                              ggCAGGTGGGGATGCCGCGGCTGGCCAGGTAGGCGGGGCTGGCGCAGGCGATGCGCACCATGTAGGCGAGCGGCGTGGCGACCAGGCGGGTGTCGGCCAAGGGGCCGGCGCCGCAGCACCAGGTCGACCTCGCCCAGGTGGCTGCCCTg                                                                          <  1:58080/149‑1 (MQ=255)                                                                                 aGGTGGGGATGCCGCGGCTGGCCAGGTAGGCGGGGCTGGCGCAGGCAATGCGCACCATGTAGGCGAGCGGCGTGGCGACCAGGCGGGTGTCGGCCAAGGGGCCGGCG‑CGCAGCACCAGGTCGCCCTCGCCCAGGTGGCTGCCCTGCAgg                                                                      >  1:70950/1‑149 (MQ=255)                                                                                   gTGGGGATGCCGCGGCTGGCCAGGTAGGCGGGGCTGGCGCAGGCGATGCGCACCATGTAGGCGAGCGGCGTGGCGACCAGGCGGGTGTCGGCCAAGGGGCCGGCG‑CGCAGCACCAGGTCGACCTCGCCCAGGTGGCTGCCCTGCAGGTc                                                                    <  5:190169/149‑1 (MQ=255)                                                                                         aTGCCGCGGCTGGCCAGGTAGGCGGGGCTGGCGCAGGCGATGCGCACCATGTAGGCGAGCGGCGTGGCGACCAGGCGGGTGTCGGCCAAGGGGCCGGCG‑CGCAGCACCAGGTCGACCTCGCCCAGGTGGCTGCCCTGCAGGTCGACa                                                                >  5:48242/1‑147 (MQ=255)                                                                                               cgGCTGGCCATGGAGGCGGGGCGGGCGCACGCGATGCGCACCATGTAGGCGAGCGGCGTGGCGACCAGGCGGGTGTCGGCCAAGGGGCCGGCG‑CGCAGCACCAGGTCGACCTCGCCCAGGTGGCTGCCCTGCAGGTCGACAAAGCTGTc                                                        <  2:70950/149‑1 (MQ=255)                                                                                               cgGCTGGCCAGGTAGGCGGGGCTGGCGCAGGCGATGCGCACCATGTAGGCGAGCGGCGTGGCGACCAGGCGGGTGTCGGCCAAGGGGCCGGCG‑CGCAGCACCAGGTCGACCTCGCCCAGGTGGCTGCCCTGCAGGTCGACAAAGCTGTc                                                        >  3:124331/1‑149 (MQ=255)                                                                                                       cAGGTAGGCGGGGCTGGCGCAGGCGATGCGCACCATGTAGGCGAGCGGCGTGGCGACCAGGCGGGTGTCGGCCAAGGGGCCGGCG‑CGCAGCACCAGGTCGACCTCGCCCAGGTGGCTGCCCTGCAGGTCGACAAAGCTGTCGATCAAcc                                                >  1:72440/1‑149 (MQ=255)                                                                                                          gTAGGCGGGGCTGGCGCAGGCGATGCGCACCATGTAGGCGAGCGGCGTGGCGACCAGGCGGGTGTCGGCCAAGGGGCCGGCG‑CGCAGCACCAGGTCGACCTCGCCCAGGTGGCTGCCCTGCAGGTCGACAAAGCTGTCGATCAACCGCa                                             <  7:241851/149‑1 (MQ=255)                                                                                                              gCGGGGCTGGCGCAGGCGATGCGCACCATGTAGGCGAGCGGCGTGGCGACCAGGCGGGTGTCGGCCAAGGGGCCGGCG‑CGCAGCACCAGGTCGACCTCGCCCAGGTGGCTGCCCTGCAGGTCGACAAAGCTGt                                                         >  4:135034/1‑133 (MQ=255)                                                                                                              gCGGGGCTGGCGCAGGCGATGCGCACCATGTAGGCGAGCGGCGTGGCGACCAGGCGGGTGTCGGCCAAGGGGCCGGCG‑CGCAGCACCAGGTCGACCTCGCCCAGGTGGCTGCCCTGCAGGTCGACAAAGCTGt                                                         <  3:135034/133‑1 (MQ=255)                                                                                                                agggCTGGCGCAGGCGATGCGCACCATGTAGGCGAGCTGCGTGGCGACCAGGCTGGTGTCGGCCAAGGGGCCGGCG‑CGCAGCACCAGGTCGACCTCGCCCAGGTGGCTGCCCTGCAGGTCGACAAAGCTGTCGATCAACCGCAGTTGc                                        <  3:171404/147‑1 (MQ=255)                                                                                                                   gCTGGCGCAGGCGATGCGCACCATGTAGGCGAGCGGCGTGGCGACCAGGCGGGTGTCGGCCAAGGGGCCGGCG‑CGCAGCACGAGGTCGACCTCGCCCAGGTGGCTGCCCTGCAGGTCGACAAAGCTGTCGATCAACCGCAGTTGCACGt                                    <  2:152693/149‑1 (MQ=255)                                                                                                                       gcgcAGGCGATGCGCACCATGTAGGCGAGCGGCGTGGCGACCAGGCGGGTGTCGGCCAAGGGGCCGGCG‑CGCAGCACCAGGTCGACCTCGCCCAGGTGGCTGCCCTGCAGGTCGACAAAGCTGTCGATCAACCGCAGTTGCACGTCCa                                 <  8:129668/148‑1 (MQ=255)                                                                                                                         gcAGGCGATGCGCACCATGTAGGCGAGCGGCGTGGCGACCAGGCGGGTGTCGGCCAAGGGGCCGGCG‑CGCAGCACCAGGTCGACCTCGCCCAAGTGGCTGCCCTGCAGGTCGACAAAGCTGTCGATCAACCGCAGTTGCACGTCCAGTc                              >  8:59385/1‑149 (MQ=255)                                                                                                                              cGATGCGCACCATGTAGGCGAGCGGCGTGGCGACCAGGCGGGTGTCGGCCAAGGGGCCGGCG‑CGCAGCACCAGGTCGACCTCGCCCAGGTGGCTGCCCTGCAGGTCGACAAAGCTGTCGATCAACCGCAGTTGCACGTCCAGTCCCggg                         <  8:255759/149‑1 (MQ=255)                                                                                                                                               gCGAGCGGCGTGGCGACCAGGCGGGTGTCGGCCAAGGGGCCGGCG‑CGCAGCACCAGGTCGACCTCGCCCAGGTGGCTGCCCTGCAGGTCGACAAAGCTGTCGATCAACCGCAGTTGCACGTCCAGTCCCGGGTAGGCCACCAGGAAGTc        >  7:187650/1‑149 (MQ=255)                                                                                                                                                 gAGCGGCGTGGCGACCAGGCGGGTGTCGGCCAAGGGGCCGGCG‑CGCAGCACCAGGTCGACCTCGCCCAGGTGGCTGCCCTGCAGGTCGACAAAGCTGTCGATCAACCGCAGTTGCACGTCCAGTCCCGGGTAGGCCACCAGGAAGTCgg      <  6:48242/149‑1 (MQ=255)                                                                                                                                                     GGCGTGGCGACCAGGCGGGTGTCGGCCAAGGGGCCGGCG‑CGCAGCACCAGGTCGACCTCGCCCAGGTGGCTGCCCTGCAGGTCGACAAAGCTGTCGATCAACCGCAGTTGCACGTCCAGTCCCGGGTAGGCCACCAGGAAGTCGGCAAt  >  8:73393‑M1/1‑149 (MQ=255)                                                                                                                                                     GGCGTGGCGACCAGGCGGGGGTCGGCCAAGGGGCCGGCG‑CGCAGCACCAGGTCGACCTCGCCCAGGTGGCTGCCCTGCAGGTCGACAAAGCTGTCGATCAACCGCAGTTGCACGTCCAGTCCCGGGTAGGCCACCAGGAAGTCGGCAAt  >  8:117604‑M1/1‑149 (MQ=255)                                                                                                                                                     |                                                                                                                                                      GGCCACACTGAAGCGCCAGGCGAACGGCGGCGCCAGGCCATCCCAGTCCAGCCCGTCATGCCCGGGCAGTTCGCTGGGGCAGGTGGGGATGCCGCGGCTGGCCAGGTAGGCGGGGCTGGCGCAGGCGATGCGCACCATGTAGGCGAGCGGCGTGGCGACCAGGCGGGTGTCGGCCAAGGGGCCGGCG‑CGCAGCACCAGGTCGACCTCGCCCAGGTGGCTGCCCTGCAGGTCGACAAAGCTGTCGATCAACCGCAGTTGCACGTCCAGTCCCGGGTAGGCCACCAGGAAGTCGGCAAT  >  NC_002947/2082598‑2082894

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.