| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_002947 | = 2357676 | 31 (0.600) | 4 (0.080) | 4/256 | NT | 11.1% | coding (635/825 nt) | PP_2072 | AraC family transcriptional regulator |
| ? | NC_002947 | = 2357710 | 34 (0.680) | coding (601/825 nt) | PP_2072 | AraC family transcriptional regulator | |||||
CGCCATAGCAGCGGGTGAAGTGCCGGGTCATGTGGCTCTGGTCATGAAAGCCTGCGGCAAGGGCGGCGTCGACCAAGGTGAAGCCGTCCAGGATCATTCGGCGCAAGCAGTCGAGGCGGCGCAGGGTGACAAAGCGATAGGGGCTGG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_002947/2357530‑2357676‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gctggAGCCTGTCGCGGGACTTTCGCACGCTGTACGGCACCAGCCCCTATCGCTTTGTCACCCTGCGCCGCCTCGACTGCTTGCGCCGAATGATCCTGGACGGCTTCACCTTGGTCGACGCCGCCCTTGCCGCAGGCTTTCATGACCAGAGCC < NC_002947/2357710‑2357563 CGCCATAGCAGCGGGTGAAGTGCCGGGTCATGTGGCTCTGGTCATGAAAGCCTGCTGCAAGGGCGGCGTCGACCAAGGTGAAGCCGTCCAGGATCATTCGGCGAAAGCAGTCGAGGCGGCGCAGGGTGACAAAGCGATAGGGGC < 8:86756/144‑1CGCCATAGCAGCGGGTGAAGTGCCGGGTCATGTGGCTCTGGTCATGAAAGCCTGCGGCAAGGGCGGCGTCGACCAAGGTGAAGCCGTCCAGGATCATTCGGCGCAAGCAGTCGAGGCGGCGCAGGGTGACAAAGCGATAGGGGC > 7:86756/1‑144 ATAGCAGCGGGTGAAGTGCCGGGTCATGTGGCTCTGGTCATGAAAGCCTGCGGCAAGGGCGGCGTCGACCAAGGTGAAGCCTTCCAGGATCATTCGGCGCAAGCAGTCGAGGCGGCGCAGGGTGACAAAGCGATAGGGG < 3:165045/139‑1 ATAGCAGCGGGTGAAGTGCCGGGTCATGTGGCTCTGGTCATGAAAGCCTGCGGCAAGGGCGGCGTCGACCAAGGTGAAGCCGTCCAGGATCATTCGGCGCAAGCAGTCGAGGCGGCGCAGGGTGACAAAGCGATAGGGG > 4:165045/1‑139 GTGGCTCTGGTCATGAAAGCCTGCGGCAAGGGCGGCGTCGACCAAGGTGAAGCCGTCCAGGATCATTCGGCGCAAGCAGTCGAGGCGGCGCAGGGTGACAAAGCGATAGGGGCTGGAGCCTGTCGCGGGACTTTCGCACGCTGTACGG > 4:129719/1‑148 TGGTCATGAAAGCCTGCGGCAAGGGCGGCGTCGACCAAGGTGAAGCCGTCCAGGATCATTCGGCGCAAGCAGTCGAGGCGGCGCAGGGTGACAAAGCGATAGGGGCTGGAGCCTGTCGCGGGACTTTCGCACGCTGTACGGCACCAG < 1:177328/147‑1 TGGTCATGAAAGCCTGCGGCAAGGGCGGCGTCGACCAAGGTGAAGCCGTCCAGGATCATTCGGCGCAAGCAGTCGAGGCGGCGCAGGGTGACAAAGCGATAGGGGCTGGAGCCTGTCGCGGGACTTTCGCACGCTGTACGGCACCAG > 2:177328/1‑147 GTCATGAAAGCCTGCGGCAAGGGCGGCGTCGACCAAGGTGAAGCCGTCCAGGATCATTCGGCGCAAGCAGTCGAGGCGGCGCAGGGTGACAAAGCGATAGGGGCTGGAGCCTGTCGCGGGACTTTCGCACGCTGTACGGCACCAGCC < 3:129719/147‑1 GCTGGAGCCTGTCGCGGGACTTTCGCACGCTGTACGGCACCAGCCCCTATCGCTTTGTCACCCTGCGCCGCCTCGACTGCTTGCGCCGAATGATCCTGGACGGCTTCACCTTGGTCGACGCCGCCCTTGCCGCAGGCTTTCATGAC > 4:84156/1‑146 GAGCCTGTCGCGGGACTTTCGCACGCTGTACGGCACCAGCCCCTATCGCTTTGTCACCCTGCGCCGCCTCGACTGCTTGCGCCGAATGATCCTGGACGGCTTCACCTTGGTCGACGCCGCCCTTGCCGCAGGCTTTCATGACCAGAGCC < 2:157233/149‑1 CGCCATAGCAGCGGGTGAAGTGCCGGGTCATGTGGCTCTGGTCATGAAAGCCTGCGGCAAGGGCGGCGTCGACCAAGGTGAAGCCGTCCAGGATCATTCGGCGCAAGCAGTCGAGGCGGCGCAGGGTGACAAAGCGATAGGGGCTGG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_002947/2357530‑2357676‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gctggAGCCTGTCGCGGGACTTTCGCACGCTGTACGGCACCAGCCCCTATCGCTTTGTCACCCTGCGCCGCCTCGACTGCTTGCGCCGAATGATCCTGGACGGCTTCACCTTGGTCGACGCCGCCCTTGCCGCAGGCTTTCATGACCAGAGCC < NC_002947/2357710‑2357563 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |