New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 2357676	31 (0.600)	4 (0.080)	4/256	NT	11.1%	coding (635/825 nt)	PP_2072	AraC family transcriptional regulator
	?	NC_002947	= 2357710	34 (0.680)					coding (601/825 nt)	PP_2072	AraC family transcriptional regulator

GGCTCTGGTCATGAAAGCCTGCGGCAAGGGCGGCGTCGACCAAGGTGAAGCCGTCCAGGATCATTCGGCGCAAGCAGTCGAGGCGGCGCAGGGTGACAAAGCGATAGGGGCTGGTGCCGTACAGCGT‑GCGAAAGTCCCGCGACAGGCTCCAGCGTTCGCGGCCACTGGCCTGTTCCAGCATGTCCAGTGTTATGCCCACATGCAGGTGTTCCATGATGAAGGCTCGGGCGCGTTCGGCTGCCTGGTAATCCAGGCGCTTGCGCCCGCGCGGCTTGCCGCCGACGGCCCGCAAGGC  >  NC_002947/2357563‑2357857                                                                                                                                                     |                                                                                                                                                    ggCTCTGGTCATGAAAGCCTGCGGCAAGGGCGGCGTCGACCAAGGTGAAGCCGTCCAGGATCATTCGGCGCAAGCAGTCGAGGCGGCGCAGGGTGACAAAGCGATAGGGGCTGGTGCCGTACAGCGT‑GCGAAAGTCCCGCGACAGGCTc                                                                                                                                                    <  2:157233‑M2/149‑2 (MQ=255)        gTCATGAAAGCCTGCGGCAAGGGCGGCGTCGACCAAGGTGAAGCCGTCCAGGATCATTCGGCGCAAGCAGTCGAGGCGGCGCAGGGTGACAAAGCGATAGGGGCTGGTGCCGTACAGCGT‑GCGAAAGTCCCGCGACAGGCTccagc                                                                                                                                                >  4:84156‑M2/1‑141 (MQ=255)                aGCCTGCGGCAAGGGCGGCGTCGACCAAGGTGAAGCCGTCCAGGATCATTCGGCGCAAGCAGTCGAGGCGGCGCAGGGTGACAAAGCGATAGGGGCTGGTGCCGTACAGCGT‑GCGAAAGTCCCGCGACAGGCTCCAGCGTTCGCGGCCa                                                                                                                                     >  1:9811/1‑149 (MQ=255)                         cAAGGGCGGCGTCGACCAAGGTGAAGCCGTCCAGGATCATTCGGCGCAAGCAGTCGAGGCGGCGCAGGGTGACAAAGCGATAGGGGCTGGTGCCGTACAGCGTCGCGAAAGTCCCGCGACAGGCTCCAGCGTTCGCGGCCACTGGCCTg                                                                                                                             <  1:66963/149‑1 (MQ=255)                             ggcggcGTCGACCAAGGTGAAGCCGTCCAGGATCATTCGGCGCAAGCAGTCGAGGCGGCGCAGGGTGACAAAGCGATAGGGGCTGGTGCCGTACAGCGT‑GCGAAAGTCCCGCGACAGGCTCCAGCGTTCGCGGCCACTGGCCTGTTc                                                                                                                          >  7:188677/1‑147 (MQ=255)                             ggcggcGTCGACCAAGGTGAAGCCGTCCAGGATCATTCGGCGCAAGCAGTCGAGGCGGCGCAGGGTGACAAAGCGATAGGGGCTGGTGCCGTACAGCGT‑GCGAAAGTCCCGCGACAGGCTCCAGCGTTCGCGGCCACTGGCCTGTTc                                                                                                                          >  4:283072/1‑147 (MQ=255)                             ggcggcGTCGACCAAGGTGAAGCCGTCCAGGATCATTCGGCGCAAGCAGTCGAGGCGGCGCAGGGTGACAAAGCGATAGGGGCTGGTGCCGTACAGCGT‑GCGAAAGTCCCGCGACAGGCTCCAGCGTTCGCGGCCACTGGCCTGTTCCa                                                                                                                        <  7:89697/149‑1 (MQ=255)                             ggcggcGTCGACCAAGGTGAAGCCGTCCAGGATCATTCGGCGCAAGCAGTCGAGGCGGCGCAGGGTGACAAAGCGATAGGGGCTGGTGCCGTACAGCGT‑GCGAAAGTCCCGCGACAGGCTCCAGCGTTCGCGGCCACTGGCCTGTTCCa                                                                                                                        <  2:87239/149‑1 (MQ=255)                              gcggcgTCGACCAAGGTGAAGCCGTCCAGGATCATTCGGCGCAAGCAGTCGAGGCGGCGCAGGGTGACAAAGCGATAGGGGCTGGTGCCGTACAGCGT‑GCGAAAGTCCCGCGACAGGCTCCAGCGTTCGCGGCCACTGGCCTGTTCCAg                                                                                                                       <  8:188677/149‑1 (MQ=255)                                    tCGACCAAGGTGAAGCCGTCCAGGATCATTCGGCGCAAGCAGTCGAGGCGGCGCAGGGTGACAAAGCGATAGGGGCTGGTGCCGTACAGCGT‑GCGAAAGTCCCGCGACAGGCTCCAGCGTTCGCGGCCACTGGCCTGTTCCAGCATGTc                                                                                                                 >  2:139789/1‑149 (MQ=255)                                      gACCAAGGTGAAGCCGTCCAGGATCATTCGGCGCAAGCAGTCGAGGCGGCGCAGGGTGACAAAGCGATAGGGGCTGGTGCCGTACAGCGT‑GCGAAAGTCCCGCGACAGGCTCCAGCGTTCGCGGCCACTGGCCTGTTCCAGCATGTc                                                                                                                 >  2:250430/1‑147 (MQ=255)                                          aaGGTGAAGCCGTCCAGGATCATTCGGCGCAAGCAGTCGAGGCGGCGCAGGGTGACAAAGCGATAGGGGCTGGTGCCGTACAGCGT‑GCGAAAGTCCCGCGACAGGCTCCAGCGTTCGCGGCCACTGGCCTGTTcc                                                                                                                         <  6:283847/135‑1 (MQ=255)                                          aaGGTGAAGCCGTCCAGGATCATTCGGCGCAAGCAGTCGAGGCGGCGCAGGGTGACAAAGCGATAGGGGCTGGTGCCGTACAGCGT‑GCGAAAGTCCCGCGACAGGCTCCAGCGTTCGCGGCCACTGGCCTGTTcc                                                                                                                         >  5:283847/1‑135 (MQ=255)                                           aGGTGAAGCCGTCCAGGATCATTCGGCGCAAGCAGTCGAGGCGGCGCAGGGTGACAAAGCGATAGGGGCTGGTGCCGTACAGCGT‑GCGAAAGTCCCGCGACAGGCTCCAGCGTTCGCGGCCACTGGCCTGTTCCAGCATGTCCAGTGtt                                                                                                          <  3:247664/149‑1 (MQ=255)                                              ggAAGCCGTCCAGGATCATTCGGCGCAAGCAGTCGAGGCGGCGCAGGGTGACAAAGCGATAGGGGCTGGTGCCGTACAGCGT‑GCGAAAGTCCCGCGACAGGCTCCAGCGTTCGCGGCCACTGGCCTGTTCCAGCATGTCCAGTGTTATg                                                                                                       <  6:306388/148‑1 (MQ=255)                                                     gTCCAGGATCATTCGGCGCAAGCAGTCGAGGCGGCGCAGGGTGACAAAGCGATAGGGGCTGGTGCCGTACAGCGT‑GCGAAAGTCCCGCGACAGGCTCCAGCGTTCGCGGCCACTGGCCTGTTCCAGCATGTCCAGTGTTATGCCCACAt                                                                                                >  3:17386/1‑149 (MQ=255)                                                       ccAGTATCTTTCGGCGCAAGCAGTAGAGGCGGCGCAGGGTGACAAAGGGATAGGGGGTGGTGCCGTACAGCGT‑GCGAAAGTCCCGCGACTGGCTCCAGCGTTCGCGGCCACTGGCCTGTTCCAGCATGTCCAGtttt                                                                                                          <  2:280472/137‑1 (MQ=255)                                                        cAGGATCATTCGGCGCAAGCAGTCGAGGCGGCGCAGGGTGACAAAGCGATAGGGGCTGGTGCCGTACAGCGT‑GCGAAAGTCCCGCGACAGGCTCCAGCGTTCGCGGCCACTGGCCTGTTCCAGCATGTCCAGTGTTATGCCCACATGc                                                                                              <  8:166357/148‑1 (MQ=255)                                                                       cAAGCAGTCGAGGCGGCGCAGGGTGACAAAGCGATAGGGGCTGGTGCCGTACAGCGT‑GCGAAAGTCCCGCGACAGGCTCCAGCGTTCGCGGCCACTGGCCTGTTCCAGCATGTCCAGTGTTATGCCCACATGCAGGTGTTCCAtgatga                                                                              <  1:250430/149‑1 (MQ=255)                                                                          gCAGTCGAGGCGGCGCAGGGTGACAAAGCGATAGGGGCTGGTGCCGTACAGCGT‑GCGAAAGTCCCGCGACAGGCTCCAGCGTTCGCGGCCACTGGc                                                                                                                                >  2:180375/1‑96 (MQ=255)                                                                          gCAGTCGAGGCGGCGCAGGGTGACAAAGCGATAGGGGCTGGTGCCGTACAGCGT‑GCGAAAGTCCCGCGACAGGCTCCAGCGTTCGCGGCCACTGGc                                                                                                                                <  1:180375/96‑1 (MQ=255)                                                                                   gcggcgCAGGGTGACAAAGCGATAGGGGCTGGTGCCGTACAGCGT‑GCGAAAGTCCCGCGACAGGCTCCAGCGTTCGCGGCCACTGGCCTGTTCCAGCATGTCCAGTGTTATGCCCACATGCAGGTGTTCCATGATGAAGGCTCGGgcgc                                                                  >  6:93608/1‑149 (MQ=255)                                                                                        gcAGGGTGACAAAGCGATAGGGGCTGGTGCCGTACAGCGT‑GCGAAAGTCCCGCGACAGGCTCCAGCGTTCGCGGCCACTGGCCTGTTCCAGCATGTCCAGTGTTATGCCCACATGCAGGTGTTCCATGATGAAGGCTCGGGCGCGTTCg                                                             <  2:164033/149‑1 (MQ=255)                                                                                                aCAAAGCGATAGGGGCTGGTGCCGTACAGCGT‑GCGAAAGTCCCGCGACAGGCTCCAGCGTTCGCGGCCACTGGCCTGTTCCAGCATGTCCAGTGTTATGCCCACATGCAGGTGTTCCATGATGAAGGCTCGGGCGCGTTCGGCTGCCt                                                      <  1:139789/148‑1 (MQ=255)                                                                                                    aGCGATAGGGGCTGGTGCCGTACAGCGT‑GCGAAAGTCCCGCGACAGGCTCCAGCGTTCGCGGCCACTGGCCTGTTCCAGCATGTCCAGTGTTATGCCCACATGCAGGTGTTCCATGATGAAGGCTCGGGCGCGTTCGGCTGCCTGGTaa                                                 <  3:283072/149‑1 (MQ=255)                                                                                                             ggCTGGTGCCGTACAGCGT‑GCGAAAGTCCCGCGACAGGCTccagcccctatcgctttgtcaccctgcgccgcctcgactgcttgcgccgaatgatcctggacggcttcaccttggtcgacgccgcccttgccgcaggctttcatgac                                          <  3:129719‑M2/147‑108 (MQ=255)                                                                                                               cTGGTGCCGTACAGCGT‑GCGAAAGTCCCGCGACAGGCTccagcccctatcgctttgtcaccctgcgccgcctcgactgcttgcgccgaatgatcctggacggcttcaccttggtcgacgccgcccttgccgcaggctttcatgacca                                        >  2:177328‑M2/1‑38 (MQ=255)                                                                                                               cTGGTGCCGTACAGCGT‑GCGAAAGTCCCGCGACAGGCTccagcccctatcgctttgtcaccctgcgccgcctcgactgcttgcgccgaatgatcctggacggcttcaccttggtcgacgccgcccttgccgcaggctttcatgacca                                        <  1:177328‑M2/147‑110 (MQ=255)                                                                                                               cTGGTGCCGTACAGCGT‑GCGAAAGTCCCGCGACAGGCTCCAGCGTTCGCGGCCACTGGCCTGTTCCAGCATGTCCAGTGTTATGCCCACATGCAGGTGTTCCATGATGAAGGCTCGGGCGCGTTCGGCTGCCTGGTAATCCAGGCGCtt                                      <  7:147489/149‑1 (MQ=255)                                                                                                                 ggTGCCGTACAGCGT‑GCGAAAGTCCCGCGACAGGCTCCAGCGTTCGCGGCCACTGGCCTGTTCCAGCATGTCCAGTGTTATGCCCACATGCAGGTGTTCCATGATGAAGGCTCGGGCGCGTTCGGCTGCCTGGTAATCCAGGCGCTTgc                                    >  6:32072/1‑149 (MQ=255)                                                                                                                 ggTGCCGTACAGCGT‑GCGAAAGTCCCGCGACAGGCTCCAGCGTTCGCGGCCACTGGCCTGTTCCAGCATGTCCAGTGTTATGCCCACATGCAGGTGTTCCATGATGAAGGCTCGGGCGCGTTCGGCTGCCTGGTAATCCAGGCGCTTgc                                    <  1:157233/149‑1 (MQ=255)                                                                                                                    gCCGTACAGCGT‑GCGAAAGTCCCGCGACAGGCTCCAGCGTTCGCGGCCACTGGCCTGTTCCAGCATGTCCAGTGTTATGCCCACATGCAGGTGTTCCATGATGAAGGCTCGGGCGCGTTCGGCTGCCTGGTAATCCAGGCGCTTGCGcc                                 >  1:295533/1‑149 (MQ=255)                                                                                                                     ccGTACAGCGT‑GCGAAAGTCCCGCGACAGGCTccagcccctatcgctttgtcaccctgcgccgcctcgactgcttgcgccgaatgatcctggacggcttcaccttggtcgacgccgcccttgccgcaggctttcatgaccagagccac                                 >  4:129719‑M2/1‑32 (MQ=255)                                                                                                                           aGCGT‑GCGAAAGTCCCGCGACAGGCTCCAGCGTTCGCGGCCACTGGCCTGTTCCAGCATGTCCAGTGTTATGCCCACATGCAGGTGTTCCATGATGAAGGCTCGGGCGCGTTCGGCTGCCTGGTAATCCAGGCGCTTGCGCCCGCGCgg                          >  7:138148/1‑149 (MQ=255)                                                                                                                               t‑GCGAAAGTCCCGCGACAGGCTCCAGCGTTCGCGGCCACTGGCCTGTTCCAGCATGTCCAGTGTTATGCCCACATGCAGGTGTTCCATGATGAAGGCTCGGGCGCGTTCGGCTGCCTGGTAATCCAGGCGCTTGCGCCCGCGCGGCTTg                      >  4:293235/1‑149 (MQ=255)                                                                                                                                   gAAAGTCCCGCGACAGGCTCCAGCGTTCGCGGCCACTGGCCTGTTCCAGCATGTCCAGTGTTATGCCCACATGCAGGTGTTCCATGATGAAGGCTCGGGCGCGTTCGGCTGcc                                                       >  2:218978/1‑113 (MQ=255)                                                                                                                                   gAAAGTCCCGCGACAGGCTCCAGCGTTCGCGGCCACTGGCCTGTTCCAGCATGTCCAGTGTTATGCCCACATGCAGGTGTTCCATGATGAAGGCTCGGGCGCGTTCGGCTGcc                                                       <  1:218978/113‑1 (MQ=255)                                                                                                                                        tCCCGCGACAGGCTCCAGCGTTCGCGGCCACTGGCCTGTTCCAGCATGTCCAGTGTTATGCCCACATGCAGGTGTTCCATGATGAAGGCTCGGGCGCGTTCGGCTGCCTGGTAATCCAGGCGCTTGCGCCCGCGCgg                          <  5:283388/137‑1 (MQ=255)                                                                                                                                        tCCCGCGACAGGCTCCAGCGTTCGCGGCCACTGGCCTGTTCCAGCATGTCCAGTGTTATGCCCACATGCAGGTGTTCCATGATGAAGGCTCGGGCGCGTTCGGCTGCCTGGTAATCCAGGCGCTTGCGCCCGCGCgg                          >  6:283388/1‑137 (MQ=255)                                                                                                                                        tCCCGCGACAGGCTCCAGCGTTCGCGGCCACTGGCCTGTTCCAGCATGTCCAGTGTTATGCCCACATGCAGGTGTTCCATGATGAAGGCTCGGGCGCGTTCGGCTGCCTGGTAATCCAGGCGCTTGCGCCCGCGCGGCTTGCCGCCGAc              >  4:140005/1‑149 (MQ=255)                                                                                                                                                     tCCAGCTGTCGCGGCCACTGGCCTGTTCCAGCATGTCCAGTGTTATGCCCACATGCAGGTGTTCCATGATGAAGGCTCGGGCGCGTTCGGCTGCCTGGTAATCCAGGCGCTTGCGCCCGCGCGGCTTGCCGCCGACGGCCCGCAAgg   <  2:114495/147‑1 (MQ=255)                                                                                                                                                     tCCAGCGTTCGCGGCCACTGGCCTGTTCCAGCATGTCCAGTGTTATGCCCACATGCAGGTGTTCCATGATGAAGGCTCGGGCGCGTTCGGCTGCCTGGTAATCCAGGCGCTTGCGCCCGCGCGGCTTGCCGCCGACGGCCCGCAAGGc  >  1:114495/1‑148 (MQ=255)                                                                                                                                                     |                                                                                                                                                    GGCTCTGGTCATGAAAGCCTGCGGCAAGGGCGGCGTCGACCAAGGTGAAGCCGTCCAGGATCATTCGGCGCAAGCAGTCGAGGCGGCGCAGGGTGACAAAGCGATAGGGGCTGGTGCCGTACAGCGT‑GCGAAAGTCCCGCGACAGGCTCCAGCGTTCGCGGCCACTGGCCTGTTCCAGCATGTCCAGTGTTATGCCCACATGCAGGTGTTCCATGATGAAGGCTCGGGCGCGTTCGGCTGCCTGGTAATCCAGGCGCTTGCGCCCGCGCGGCTTGCCGCCGACGGCCCGCAAGGC  >  NC_002947/2357563‑2357857

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.