New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 2357676	31 (0.600)	4 (0.080)	4/256	NT	11.1%	coding (635/825 nt)	PP_2072	AraC family transcriptional regulator
	?	NC_002947	= 2357710	34 (0.680)					coding (601/825 nt)	PP_2072	AraC family transcriptional regulator

AGCAGCGGGTGAAGTGCCGGGTCATGTGGCTCTGGTCATGAAAGCCTGCGGCAAGGGCGGCGTCGACCAAGGTGAAGCCGTCCAGGATCATTCGGCGCAAGCAGTCGAGGCGGCGCAGGGTGACAAAGCGATAGGGGCTGGTGCCGTACAGCGT‑GCGAAAGTCCCGCGACAGGCTCCAGCGTTCGCGGCCACTGGCCTGTTCCAGCATGTCCAGTGTTATGCCCACATGCAGGTGTTCCATGATGAAGGCTCGGGCGCGTTCGGCTGCCTGGTAATCCAGGCGCTTGC  >  NC_002947/2357536‑2357823                                                                                                                                             |                                                                                                                                                     agcagcGGGTGAAGTGCCGGGTCATGTGGCTCTGGTCATGAAAGCCTGCGGCAAGGGCGGCGTCGACCAAGGTGAAGCCGTCCAGGATCATTCGGCGCAAGCAGTCGAGGCGGCGCAGGGTGACAAAGCGATAGGGGCTGGTGCCGTa                                                                                                                                               <  4:256255/148‑1 (MQ=255)            aaGTGCCGGGTCATGTGGCTCTGGTCATGAAAGCCTGCGGCAAGGGCGGCGTCGACCAAGGTGAAGCCGTCCAGGATCATTCGGCGCAAGCAGTCGAGGCGGCGCAGGGTGACAAAGCGATAGGGGCTGGTGCCGTACAGCGT‑GCGaaa                                                                                                                                  <  5:52144/149‑1 (MQ=255)              gTGCCGGGTCATGTGGCTCTGGTCATGAAAGCCTGCGGCAAGGGCGGCGTCGACCAAGGTGAAGCCGGCCAGGATCATTCGGCGCAAGCAGTCGAGGCGGCGCAGGGTGACAAAGCGATAGGGGCTGGTGCCGTACAGCGG‑GCGAAAGt                                                                                                                                <  8:78988/149‑1 (MQ=255)                      tCATGTGGCTCTGGTCATGAAAGCCTGCGGCAAGGGCGGCGTCGACCAAGGTGAAGCCGTCCAGGATCATTCGGCGCAAGCAGTCGAGGCGGCGCAGGGTGACAAAGCGATAGGGGCTGGTGCCGTACAGCGT‑GCGAAAGTCCCGCGa                                                                                                                         >  1:87239/1‑148 (MQ=255)                      tCATGTGGCTCTGGTCATGAAAGCCTGCGGCAAGGGCGGCGTCGACCAAGGTGAAGCCGTCCAGGATCATTCGGCGCAAGCAGTCGAGGCGGCGCAGGGTGACAAAGCGATAGGGGCTGGTGCCGTACAGCGT‑GCGAAAGTCCCGCGAc                                                                                                                        <  6:302764/149‑1 (MQ=255)                      tCATGTGGCTCTGGTCATGAAAGCCTGCGGCAAGGGCGGCGTCGACCAAGGTGAAGCCGTCCAGGATCATTCGGCGCAAGCAGTCGAGGCGGCGCAGGGTGACAAAGCGATAGGGGCTGGTGCCGTACAGCGT‑GCGAAAGTCCCGCGAc                                                                                                                        <  4:285891/149‑1 (MQ=255)                        aTGTGGCTCTGGTCATGAAAGCCTGCGGCAAGGGCGGCGTCGACCAAGGTGAAGCCGTCCAGGATCATTCGGCGCAAGCAGTCGAGGCGGCGCAGGGTGACAAAGCGATAGGGGCTGGt                                                                                                                                                     >  3:243946/1‑119 (MQ=255)                        aTGTGGCTCTGGTCATGAAAGCCTGCGGCAAGGGCGGCGTCGACCAAGGTGAAGCCGTCCAGGATCATTCGGCGCAAGCAGTCGAGGCGGCGCAGGGTGACAAAGCGATAGGGGCTGGt                                                                                                                                                     <  4:243946/119‑1 (MQ=255)                        aTGTGGCTCTGGTCATGAAAGCCTGCGGCAAGGGCGGCGTCGACCAAGGTGAAGCCGTCCAGGATCATTCGGCGCAAGCAGTCGAGGCGGCGCAGGGTGACAAAGCGATAGGGGCTGGTGCCGTACAGCGT‑GCGAAAGTCCCGCGACa                                                                                                                       <  2:218836/148‑1 (MQ=255)                        aTGTGGCTCTGGTCATGAAAGCCTGCGGCAAGGGCGGCGTCGACCAAGGTGAAGCCGTCCAGGATCATTCGGCGCAAGCAGTCGAGGCGGCGCAGGGTGACAAAGCGATAGGGGCTGGTGCCGTACAGCGT‑GCGAAAGTCCCGCGACAg                                                                                                                      <  6:48709/149‑1 (MQ=255)                          gtgGCTCTGGTCATGAAAGCCTGCGGCAAGGGCGGCGTCGACCAAGGTGAAGCCGTCCAGGATCATTCGGCGCAAGCAGTCGAGGCGGCGCAGGGTGACAAAGCGATAGGGGCTGGagcctgtcgcgggactttcgcacgctgtacgg                                                                                                                      >  4:129719‑M1/1‑116 (MQ=255)                            ggCTCTGGTCATGAAAGCCTGCGGCAAGGGCGGCGTCGACCAAGGTGAAGCCGTCCAGGATCATTCGGCGCAAGCAGTCGAGGCGGCGCAGGGTGACAAAGCGATAGGGGCTGGTGCCGTACAGCGT‑GCGAAAGTCCCGCGACAGGCTc                                                                                                                  <  2:157233‑M2/149‑2 (MQ=255)                                 tGGTCATGAAAGCCTGCGGCAAGGGCGGCGTCGACCAAGGTGAAGCCGTCCAGGATCATTCGGCGCAAGCAGTCGAGGCGGCGCAGGGTGACAAAGCGATAGGGGCTGGagcctgtcgcgggactttcgcacgctgtacggcaccag                                                                                                                >  2:177328‑M1/1‑109 (MQ=255)                                 tGGTCATGAAAGCCTGCGGCAAGGGCGGCGTCGACCAAGGTGAAGCCGTCCAGGATCATTCGGCGCAAGCAGTCGAGGCGGCGCAGGGTGACAAAGCGATAGGGGCTGGagcctgtcgcgggactttcgcacgctgtacggcaccag                                                                                                                <  1:177328‑M1/147‑39 (MQ=255)                                   gTCATGAAAGCCTGCGGCAAGGGCGGCGTCGACCAAGGTGAAGCCGTCCAGGATCATTCGGCGCAAGCAGTCGAGGCGGCGCAGGGTGACAAAGCGATAGGGGCTGGagcctgtcgcgggactttcgcacgctgtacggcaccagcc                                                                                                              <  3:129719‑M1/147‑41 (MQ=255)                                   gTCATGAAAGCCTGCGGCAAGGGCGGCGTCGACCAAGGTGAAGCCGTCCAGGATCATTCGGCGCAAGCAGTCGAGGCGGCGCAGGGTGACAAAGCGATAGGGGCTGGTGCCGTACAGCGT‑GCGAAAGTCCCGCGACAGGCTccagc                                                                                                              >  4:84156‑M2/1‑141 (MQ=255)                                           aGCCTGCGGCAAGGGCGGCGTCGACCAAGGTGAAGCCGTCCAGGATCATTCGGCGCAAGCAGTCGAGGCGGCGCAGGGTGACAAAGCGATAGGGGCTGGTGCCGTACAGCGT‑GCGAAAGTCCCGCGACAGGCTCCAGCGTTCGCGGCCa                                                                                                   >  1:9811/1‑149 (MQ=255)                                                    cAAGGGCGGCGTCGACCAAGGTGAAGCCGTCCAGGATCATTCGGCGCAAGCAGTCGAGGCGGCGCAGGGTGACAAAGCGATAGGGGCTGGTGCCGTACAGCGTCGCGAAAGTCCCGCGACAGGCTCCAGCGTTCGCGGCCACTGGCCTg                                                                                           <  1:66963/149‑1 (MQ=255)                                                        ggcggcGTCGACCAAGGTGAAGCCGTCCAGGATCATTCGGCGCAAGCAGTCGAGGCGGCGCAGGGTGACAAAGCGATAGGGGCTGGTGCCGTACAGCGT‑GCGAAAGTCCCGCGACAGGCTCCAGCGTTCGCGGCCACTGGCCTGTTc                                                                                        >  7:188677/1‑147 (MQ=255)                                                        ggcggcGTCGACCAAGGTGAAGCCGTCCAGGATCATTCGGCGCAAGCAGTCGAGGCGGCGCAGGGTGACAAAGCGATAGGGGCTGGTGCCGTACAGCGT‑GCGAAAGTCCCGCGACAGGCTCCAGCGTTCGCGGCCACTGGCCTGTTc                                                                                        >  4:283072/1‑147 (MQ=255)                                                        ggcggcGTCGACCAAGGTGAAGCCGTCCAGGATCATTCGGCGCAAGCAGTCGAGGCGGCGCAGGGTGACAAAGCGATAGGGGCTGGTGCCGTACAGCGT‑GCGAAAGTCCCGCGACAGGCTCCAGCGTTCGCGGCCACTGGCCTGTTCCa                                                                                      <  7:89697/149‑1 (MQ=255)                                                        ggcggcGTCGACCAAGGTGAAGCCGTCCAGGATCATTCGGCGCAAGCAGTCGAGGCGGCGCAGGGTGACAAAGCGATAGGGGCTGGTGCCGTACAGCGT‑GCGAAAGTCCCGCGACAGGCTCCAGCGTTCGCGGCCACTGGCCTGTTCCa                                                                                      <  2:87239/149‑1 (MQ=255)                                                         gcggcgTCGACCAAGGTGAAGCCGTCCAGGATCATTCGGCGCAAGCAGTCGAGGCGGCGCAGGGTGACAAAGCGATAGGGGCTGGTGCCGTACAGCGT‑GCGAAAGTCCCGCGACAGGCTCCAGCGTTCGCGGCCACTGGCCTGTTCCAg                                                                                     <  8:188677/149‑1 (MQ=255)                                                               tCGACCAAGGTGAAGCCGTCCAGGATCATTCGGCGCAAGCAGTCGAGGCGGCGCAGGGTGACAAAGCGATAGGGGCTGGTGCCGTACAGCGT‑GCGAAAGTCCCGCGACAGGCTCCAGCGTTCGCGGCCACTGGCCTGTTCCAGCATGTc                                                                               >  2:139789/1‑149 (MQ=255)                                                                 gACCAAGGTGAAGCCGTCCAGGATCATTCGGCGCAAGCAGTCGAGGCGGCGCAGGGTGACAAAGCGATAGGGGCTGGTGCCGTACAGCGT‑GCGAAAGTCCCGCGACAGGCTCCAGCGTTCGCGGCCACTGGCCTGTTCCAGCATGTc                                                                               >  2:250430/1‑147 (MQ=255)                                                                     aaGGTGAAGCCGTCCAGGATCATTCGGCGCAAGCAGTCGAGGCGGCGCAGGGTGACAAAGCGATAGGGGCTGGTGCCGTACAGCGT‑GCGAAAGTCCCGCGACAGGCTCCAGCGTTCGCGGCCACTGGCCTGTTcc                                                                                       >  5:283847/1‑135 (MQ=255)                                                                     aaGGTGAAGCCGTCCAGGATCATTCGGCGCAAGCAGTCGAGGCGGCGCAGGGTGACAAAGCGATAGGGGCTGGTGCCGTACAGCGT‑GCGAAAGTCCCGCGACAGGCTCCAGCGTTCGCGGCCACTGGCCTGTTcc                                                                                       <  6:283847/135‑1 (MQ=255)                                                                      aGGTGAAGCCGTCCAGGATCATTCGGCGCAAGCAGTCGAGGCGGCGCAGGGTGACAAAGCGATAGGGGCTGGTGCCGTACAGCGT‑GCGAAAGTCCCGCGACAGGCTCCAGCGTTCGCGGCCACTGGCCTGTTCCAGCATGTCCAGTGtt                                                                        <  3:247664/149‑1 (MQ=255)                                                                         ggAAGCCGTCCAGGATCATTCGGCGCAAGCAGTCGAGGCGGCGCAGGGTGACAAAGCGATAGGGGCTGGTGCCGTACAGCGT‑GCGAAAGTCCCGCGACAGGCTCCAGCGTTCGCGGCCACTGGCCTGTTCCAGCATGTCCAGTGTTATg                                                                     <  6:306388/148‑1 (MQ=255)                                                                                gTCCAGGATCATTCGGCGCAAGCAGTCGAGGCGGCGCAGGGTGACAAAGCGATAGGGGCTGGTGCCGTACAGCGT‑GCGAAAGTCCCGCGACAGGCTCCAGCGTTCGCGGCCACTGGCCTGTTCCAGCATGTCCAGTGTTATGCCCACAt                                                              >  3:17386/1‑149 (MQ=255)                                                                                  ccAGTATCTTTCGGCGCAAGCAGTAGAGGCGGCGCAGGGTGACAAAGGGATAGGGGGTGGTGCCGTACAGCGT‑GCGAAAGTCCCGCGACTGGCTCCAGCGTTCGCGGCCACTGGCCTGTTCCAGCATGTCCAGtttt                                                                        <  2:280472/137‑1 (MQ=255)                                                                                   cAGGATCATTCGGCGCAAGCAGTCGAGGCGGCGCAGGGTGACAAAGCGATAGGGGCTGGTGCCGTACAGCGT‑GCGAAAGTCCCGCGACAGGCTCCAGCGTTCGCGGCCACTGGCCTGTTCCAGCATGTCCAGTGTTATGCCCACATGc                                                            <  8:166357/148‑1 (MQ=255)                                                                                                  cAAGCAGTCGAGGCGGCGCAGGGTGACAAAGCGATAGGGGCTGGTGCCGTACAGCGT‑GCGAAAGTCCCGCGACAGGCTCCAGCGTTCGCGGCCACTGGCCTGTTCCAGCATGTCCAGTGTTATGCCCACATGCAGGTGTTCCAtgatga                                            <  1:250430/149‑1 (MQ=255)                                                                                                     gCAGTCGAGGCGGCGCAGGGTGACAAAGCGATAGGGGCTGGTGCCGTACAGCGT‑GCGAAAGTCCCGCGACAGGCTCCAGCGTTCGCGGCCACTGGc                                                                                              <  1:180375/96‑1 (MQ=255)                                                                                                     gCAGTCGAGGCGGCGCAGGGTGACAAAGCGATAGGGGCTGGTGCCGTACAGCGT‑GCGAAAGTCCCGCGACAGGCTCCAGCGTTCGCGGCCACTGGc                                                                                              >  2:180375/1‑96 (MQ=255)                                                                                                              gcggcgCAGGGTGACAAAGCGATAGGGGCTGGTGCCGTACAGCGT‑GCGAAAGTCCCGCGACAGGCTCCAGCGTTCGCGGCCACTGGCCTGTTCCAGCATGTCCAGTGTTATGCCCACATGCAGGTGTTCCATGATGAAGGCTCGGgcgc                                >  6:93608/1‑149 (MQ=255)                                                                                                                   gcAGGGTGACAAAGCGATAGGGGCTGGTGCCGTACAGCGT‑GCGAAAGTCCCGCGACAGGCTCCAGCGTTCGCGGCCACTGGCCTGTTCCAGCATGTCCAGTGTTATGCCCACATGCAGGTGTTCCATGATGAAGGCTCGGGCGCGTTCg                           <  2:164033/149‑1 (MQ=255)                                                                                                                           aCAAAGCGATAGGGGCTGGTGCCGTACAGCGT‑GCGAAAGTCCCGCGACAGGCTCCAGCGTTCGCGGCCACTGGCCTGTTCCAGCATGTCCAGTGTTATGCCCACATGCAGGTGTTCCATGATGAAGGCTCGGGCGCGTTCGGCTGCCt                    <  1:139789/148‑1 (MQ=255)                                                                                                                               aGCGATAGGGGCTGGTGCCGTACAGCGT‑GCGAAAGTCCCGCGACAGGCTCCAGCGTTCGCGGCCACTGGCCTGTTCCAGCATGTCCAGTGTTATGCCCACATGCAGGTGTTCCATGATGAAGGCTCGGGCGCGTTCGGCTGCCTGGTaa               <  3:283072/149‑1 (MQ=255)                                                                                                                                        ggCTGGTGCCGTACAGCGT‑GCGAAAGTCCCGCGACAGGCTccagcccctatcgctttgtcaccctgcgccgcctcgactgcttgcgccgaatgatcctggacggcttcaccttggtcgacgccgcccttgccgcaggctttcatgac        <  3:129719‑M2/147‑108 (MQ=255)                                                                                                                                         gCTGGagcctgtcgcgggactttcgcacgctgtacggcaccagcccctatcgctttgtcaccctgcgccgcctcgactgcttgcgccgaatgatcctggacggcttcaccttggtcgacgccgcccttgccgcaggctttcatgac         >  4:84156‑M1/1‑5 (MQ=255)                                                                                                                                          cTGGTGCCGTACAGCGT‑GCGAAAGTCCCGCGACAGGCTccagcccctatcgctttgtcaccctgcgccgcctcgactgcttgcgccgaatgatcctggacggcttcaccttggtcgacgccgcccttgccgcaggctttcatgacca      <  1:177328‑M2/147‑110 (MQ=255)                                                                                                                                          cTGGTGCCGTACAGCGT‑GCGAAAGTCCCGCGACAGGCTccagcccctatcgctttgtcaccctgcgccgcctcgactgcttgcgccgaatgatcctggacggcttcaccttggtcgacgccgcccttgccgcaggctttcatgacca      >  2:177328‑M2/1‑38 (MQ=255)                                                                                                                                          cTGGTGCCGTACAGCGT‑GCGAAAGTCCCGCGACAGGCTCCAGCGTTCGCGGCCACTGGCCTGTTCCAGCATGTCCAGTGTTATGCCCACATGCAGGTGTTCCATGATGAAGGCTCGGGCGCGTTCGGCTGCCTGGTAATCCAGGCGCtt    <  7:147489/149‑1 (MQ=255)                                                                                                                                            ggTGCCGTACAGCGT‑GCGAAAGTCCCGCGACAGGCTCCAGCGTTCGCGGCCACTGGCCTGTTCCAGCATGTCCAGTGTTATGCCCACATGCAGGTGTTCCATGATGAAGGCTCGGGCGCGTTCGGCTGCCTGGTAATCCAGGCGCTTgc  >  6:32072/1‑149 (MQ=255)                                                                                                                                            ggTGCCGTACAGCGT‑GCGAAAGTCCCGCGACAGGCTCCAGCGTTCGCGGCCACTGGCCTGTTCCAGCATGTCCAGTGTTATGCCCACATGCAGGTGTTCCATGATGAAGGCTCGGGCGCGTTCGGCTGCCTGGTAATCCAGGCGCTTgc  <  1:157233/149‑1 (MQ=255)                                                                                                                                             gagcctgtcgcgggactttcgcacgctgtacggcaccagcccctatcgctttgtcaccctgcgccgcctcgactgcttgcgccgaatgatcctggacggcttcaccttggtcgacgccgcccttgccgcaggctttcatgaccagagcc  <  2:157233‑M1/149‑149 (MQ=255)                                                                                                                                             |                                                                                                                                                     AGCAGCGGGTGAAGTGCCGGGTCATGTGGCTCTGGTCATGAAAGCCTGCGGCAAGGGCGGCGTCGACCAAGGTGAAGCCGTCCAGGATCATTCGGCGCAAGCAGTCGAGGCGGCGCAGGGTGACAAAGCGATAGGGGCTGGTGCCGTACAGCGT‑GCGAAAGTCCCGCGACAGGCTCCAGCGTTCGCGGCCACTGGCCTGTTCCAGCATGTCCAGTGTTATGCCCACATGCAGGTGTTCCATGATGAAGGCTCGGGCGCGTTCGGCTGCCTGGTAATCCAGGCGCTTGC  >  NC_002947/2357536‑2357823

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.