New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	2990163 =	29 (0.560)	3 (0.060)	3/254	NT	7.1%	coding (1317/2169 nt)	vgrG‑I	type VI secretion system protein
	?	NC_002947	= 4612508	51 (1.030)					intergenic (+1470/‑637)	hcpC‑II/PP_4084	hemolysin‑coregulated protein/hypothetical protein

AATCTACTGCGATGAATGGGGCCGGGTAAAAGTCAGTTTCCCCTGGGACCGCGAAAGCCAGAACAACGAGTTCAGTTCGTGCTGGCTGCGGGTGTCTCAAGGCTGG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/2990268‑2990163 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ggctggTCGGGGTCGCCGTTGACGTAATGGATGATCACGTCCTGGCCGATCCGAGGGATGGCCATCGAGCCCCAGCTGCCCCCCGCCCAGCCTTGAGACACCCGCAGCCAGCACGAACTGAACTCGTTGTTCTGGCTTTCGCGGTCCCAGGG  <  NC_002947/4612508‑4612363                                                                                                                                                                                                                                                              AATCTACTGCGATGAATGGGGCCGGGTAAAAGTCAGTTTCCCCTGGGACCGCGAAAGCCAGAACAACGAGTTCAGTTCGTGCTGGCTGCGGGTGTCTCAAGGCTGGTCGGGGTCGCCGTTGACGTAATGGATGATCACGTCCTGGCCGA                                                                                                         >  2:43818/1‑149                             AAAGTCAGTTTCCCCTGGGACCGCGAAAGCCAGAACAACGAGTTCAGTTCGTGCTGGCTGCGGGTGTCTCAAGGCTGATCGGGGTCGCCGTTGACGTAATGGATGATCACGTCCTGGCCGATCCGGGGGATGGCCATCGAGCCCCAGCT                                                                             >  3:194522/1‑149                                           CTGGGACCGCGAAAGCCAGAACAACGAGTTCAGTTCGTGCTGGCTGCGGGTGTCTCAAGGCTGGTCGGGGTCGCCGTTGACGTAATGGATGATCACGTCCTGGCCGATCCGAGGGATGGCCATCGAGCCCCAGCTGCCCCCCGCCCAGC                                                               <  1:43818/149‑1                                                                                                       CTGGTCGGGGTCGCCTGTGACGTAATCGACGATCACCTCCTGGCCGATCCGAGGGATGGCCATCGAGCCCCAGCTGCCCCCCGCCCAGCCTTGAGACACCCGCAGCCAGCACGAACTGAACTCGTTGTTCTGGCTTTCGCGGTCCCAGG   <  4:200852/149‑1                                                                                                       CTGGTCGGGGTCGCCGTTGACGTAATGGATGATCACGTCCTGGCCGATCCGAGGGATGGCCATCGAGCCCCAGCTGCCCCCCGCCCAGCCTTGAGACACCCGCAGCCAGCACGAACTGAACTCGTTGTTCTGGCTTTCGCGGTCCCAGG   <  5:269037/149‑1                                                                                                          GTCGGGGTCGCCGTTGACGTAATGGATGATCACGTCCTGGCCGATCCGAGGGATGGCCATCGAGCCCCAGCTGCCCCCCGCCCAGCCTTGAGACACCCGCAGCCAGCACGAACTGAACTCGTTGTTCTGGCTTTCGCGGTCCCAGGG  <  5:226981/147‑1                                                                                                                                                                                                                                                              AATCTACTGCGATGAATGGGGCCGGGTAAAAGTCAGTTTCCCCTGGGACCGCGAAAGCCAGAACAACGAGTTCAGTTCGTGCTGGCTGCGGGTGTCTCAAGGCTGG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/2990268‑2990163 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ggctggTCGGGGTCGCCGTTGACGTAATGGATGATCACGTCCTGGCCGATCCGAGGGATGGCCATCGAGCCCCAGCTGCCCCCCGCCCAGCCTTGAGACACCCGCAGCCAGCACGAACTGAACTCGTTGTTCTGGCTTTCGCGGTCCCAGGG  <  NC_002947/4612508‑4612363

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.