| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_002947 | 2990163 = | 29 (0.560) | 3 (0.060) | 3/254 | NT | 7.1% | coding (1317/2169 nt) | vgrG‑I | type VI secretion system protein |
| ? | NC_002947 | = 4612508 | 51 (1.030) | intergenic (+1470/‑637) | hcpC‑II/PP_4084 | hemolysin‑coregulated protein/hypothetical protein | |||||
TGACGGGGAAGGTCGTACGGTGGCAGCTGGTTGCCGCAGTAAGTACGGCCGGTGATCATCGGCTGATCGGGGTCGCCGTTGACGTAATGGATGATCACGTCCTGGCCGATCCGGGGGATGGCCATCGAGCCCCAGCTGCCACCCGCCCAGCCTTGAGACACCCGCAGCCAGCACGAACTGAACTCGTTGTTCTGGCTTTCGCGGTCCCAGGGGAAACTGACTTTTACCCGGCCCCATTCATCGCAGTAGATTTCCTCGCCAGGCGGGCCGACGACGGTGGCCATGTGCG > NC_002947/2990017‑2990305 | ccctgggaccgcgaaagccagaacaacgagttcagttcgtgctggctgcgggtgtctcaaggctgggcggggggcagctggggctcgatggccatccctcggatcggccaggacgtgatcatccattacgtcaacggcgaccccgac < 5:226981‑M1/1‑1 (MQ=255) cctgggaccgcgaaagccagaacaacgagttcagttcgtgctggctgcgggtgtctcaaggctgggcggggggcagctggggctcgatggccatccctcggatcggccaggaggtgatcgtcgattacgtcacaggcgaccccgaCCAg < 4:200852‑M1/4‑1 (MQ=255) cctgggaccgcgaaagccagaacaacgagttcagttcgtgctggctgcgggtgtctcaaggctgggcggggggcagctggggctcgatggccatccctcggatcggccaggacgtgatcatccattacgtcaacggcgaccccgaCCAg < 5:269037‑M1/4‑1 (MQ=255) gAAGGTCGTACGGTGGCAGCTGGTTGCCGCAGTAAGTACGGCCGGTGATCATCGGCTGATCGGGGTCGCCGTTGACGTAATGGATGATCACGTCCTGGCCGATCCGGGGGATGGCCATCGAGCCCCAGCTGCCACCCGCCCAGCCTTga < 7:166411/149‑1 (MQ=255) gAAGGTCGTACGGTGGCAGCTGGTTGCCGCAGTAAGTACGGCCGGTGATCATCGGCTGATCGGGGTCGCCGTTGACGTAATGGATGATCACGTCCTGGCCGATCCGGGGGATGGCCATCGAGCCCCAGCTGCCACCCGCCCAGCCTTga < 7:18055/149‑1 (MQ=255) gTACGGTGGCAGCTGGTTGCCGCAGTAAGTACGGCCGGTGATCATCGGCTGATCGGGGTCGCCGTTGACGTAATGGATGATCACGTCCTGGCCGATCCGGGGGATGGCCATCGAGCCCCAGCTGCCACCCGCCCAGCCTTGAGACAccc < 2:235197/149‑1 (MQ=255) tACGGTGGCAGCTGGTTGCCGCAGTAAGTACGGCCGGTGATCATCGGCTGATCGGGGTCGCCGTTGACGTAATGGATGATCACGTCCTGGCCGATCCGGGGGATGGCCATCGAGCCCCAGCTGCCACCCGCCCAGCCTTGAGACACCCg > 4:6842/1‑149 (MQ=255) gCTGGTTGCCGCAGTAAGTACGGCCGGTGATCATCGGCTGATCGGGGTCGCCGTTGACGTAATGGATGATCACGTCCTGGCCGATCCGGGGGATGGCCATCGAGCCCCAGCTGCCACCCGCCCAGCCTTga > 1:99549/1‑131 (MQ=255) gCTGGTTGCCGCAGTAAGTACGGCCGGTGATCATCGGCTGATCGGGGTCGCCGTTGACGTAATGGATGATCACGTCCTGGCCGATCCGGGGGATGGCCATCGAGCCCCAGCTGCCACCCGCCCAGCCTTga < 2:99549/131‑1 (MQ=255) ggTTGCCGCAGTAAGTACGGCCGGTGATCATCGGCTGATCGGGGTCGCCGTTGACGTAATGGATGATCACGTCCTGGCCGATCCGGGGGATGGCCATCGAGCCCCAGCTGCCACCCGCCCAGCCTTGAGACACCCg > 8:181609/1‑136 (MQ=255) ggTTGCCGCAGTAAGTACGGCCGGTGATCATCGGCTGATCGGGGTCGCCGTTGACGTAATGGATGATCACGTCCTGGCCGATCCGGGGGATGGCCATCGAGCCCCAGCTGCCACCCGCCCAGCCTTGAGACACCCg < 7:181609/136‑1 (MQ=255) gctgggcggggggcagctggggctcgatggccatccctcggatcggccaggacgtgatcatccattacgtcaacggcgaccccgaCCAGCCTTGAGACACCCGCAGCCAGCACGAACTGAACTCGTTGTTCTGGCTTTCGCGGTCCCAg < 1:43818‑M1/64‑1 (MQ=255) gggTCGCCGTTGACGTAATGGATGATCACGTCCTGGCCGATCCGGGGGATGGCCATCGAGCCCCAGCTGCCACCCGCCCAGCCTTGAGACACCCGCAGCCAGTACGAACTGAACTCGTTGTTCTGGCTTTCGCGGt < 3:212033/136‑1 (MQ=21) gggTCGCCGTTGACGTAATGGATGATCACGTCCTGGCCGATCCGGGGGATGGCCATCGAGCCCCAGCTGCCACCCGCCCAGCCTTGAGACACCCGCAGCCAGTACGAACTGAACTCGTTGTTCTGGCTTTCGCGGt > 4:212033/1‑136 (MQ=21) gTCGCCGTTGACGTAATGGATGATCACGTCCTGGCCGATCCGGGGGATGGCCATCGAGCCCCAGCTGCCACCCGCCCAGCCTTGAGACACCCGCAGCCAGCACGAACTGAACTCGTTGTTCTGGCTTTCGCGGTCCCAGGGGAAACTGa > 3:273826/1‑149 (MQ=34) tCGCCGTTGACGTAATGGATGATCACGTCCTGGCCGATCCGGGGGATGGCCATCGAGCCCCAGCTGCCACCCGCCCAGCCTTGAGACACCCGCAGCCAGCACGAACTGAACTCGTTGTTCTGGCTTTCGCGGTCCCAGGGGAAACTGAc < 5:185162/149‑1 (MQ=34) agctggggctcgatggccatcccccggatcggccaggacgtgatcatccattacgtcaacggcgaccccgaTCAGCCTTGAGACACCCGCAGCCAGCACGAACTGAACTCGTTGTTCTGGCTTTCGCGGTCCCAGGGGAAACTGACttt > 3:194522‑M1/72‑149 (MQ=255) tGGCCGATCCGGGGGATGGCCATCGAGCCCCAGCTGCCACCCGCCCAGCCTTGAGACACCCGCAGCCAGCACGAACTGAACTCGTTGTTCTGGCTTTCGCGGTCCCAGGGGAAACTGACTTTTACCCGGCCCCATTCATCGCAGt > 4:110450/1‑145 (MQ=34) tGGCCGATCCGGGGGATGGCCATCGAGCCCCAGCTGCCACCCGCCCAGCCTTGAGACACCCGCAGCCAGCACGAACTGAACTCGTTGTTCTGGCTTTCGCGGTCCCAGGGGAAACTGACTTTTACCCGGCCCCATTCATCGCAGt < 3:110450/145‑1 (MQ=34) tGGCCGATCCGGGGGATGGCCATCGAGCCCCAGCTGCCACCCGCCCAGCCTTGAGACACCCGCAGCCAGCACGAACTGAACTCGTTGTTCTGGCTTTCGCGGTCCCAGGGGAAACTGACTTTTACCCGGCCCCATTCATCGCAGTAGAt > 7:200890/1‑149 (MQ=34) tGGCCGATCCGGGGGATGGCCATCGAGCCCCAGCTGCCACCCGCCCAGCCTTGAGACACCCGCAGCCAGCACGAACTGAACTCGTTGTTCTGGCTTTCGCGGTCCCAGGGGAAACTGACTTTTACCCGGCCCCATTCATCGCAGTAGAt > 5:162258/1‑149 (MQ=34) tcggccaggacgtgatcatccattacgtcaacggcgaccccgaCCAGCCTTGAGACACCCGCAGCCAGCACGAACTGAACTCGTTGTTCTGGCTTTCGCGGTCCCAGGGGAAACTGACTTTTACCCGGCCCCATTCATCGCAGTAGAtt > 2:43818‑M1/44‑149 (MQ=255) ggCCGATCCGGGGGATGGCCATCGAGCCCCGGCTGCCACCCGCCCAGCCTTGAGACACCCGCAGCCAGCACGAACTGAACTCGTTGTTCTGGCTTTCGCGGTCCCAGGGGAAACTGACTTTTACCCGGCCCCATTCATCGCAGTAGAtt > 6:9926/1‑149 (MQ=21) gCCGATCCGGGGGATGGCCATCGAGCCCCAGCTGCCACCCGCCCAGCCTTGAGACACCCGCAGCCAGCACGAACTGAACTCGTTGTTCTGGCTTTCGCGGTCCCAGGGGAAACTGACTTTTACCCGGCCCCATTCATCGCa > 1:313185/1‑141 (MQ=34) gCCGATCCGGGGGATGGCCATCGAGCCCCAGCTGCCACCCGCCCAGCCTTGAGACACCCGCAGCCAGCACGAACTGAACTCGTTGTTCTGGCTTTCGCGGTCCCAGGGGAAACTGACTTTTACCCGGCCCCATTCATCGCa < 2:313185/141‑1 (MQ=34) gCCGATCCGGGGGATGGCCATCGAGCCCCAGCTGCCACCCGCCCAGCCTTGAGACACCCGCAGCCAGCACGAACTGAACTCGTTGTTCTGGCTTTCGCGGTCCCAGGGGAAACTGACTTTTACCCGGCCCCATTCATCGCAGTAGAttt > 6:229524/1‑149 (MQ=34) tCCGGGGGATGGCCATCGAGCCCCAGCTGCCACCCGCCCAGCCTTGAGACACCCGCAGCCAGCACGAACTGAACTCGTTGTTCTGGCTTTCGCGGTCCCAGGGGAAACTGACTTTTACCCGGCCCCATTCATCGCAGTAGATTTCCTCg < 3:6842/149‑1 (MQ=34) cATCGAGCCCCAGCTGCCACCCGCCCAGCCTTGAGACACCCGCAGCCAGCACGAACTGAACTCGTTGTTCTGGCTTTCGCGGTCCCAGGGGAAACTGACTTTTACCCGGCCCCa < 6:118087/114‑1 (MQ=32) cATCGAGCCCCAGCTGCCACCCGCCCAGCCTTGAGACACCCGCAGCCAGCACGAACTGAACTCGTTGTTCTGGCTTTCGCGGTCCCAGGGGAAACTGACTTTTACCCGGCCCCa > 5:118087/1‑114 (MQ=32) cATCGAGCCCCAGCTGCCACCCGCCCAGCCTTGAGACACCCGCAGCCAGCACGAACTGAACTCGTTGTTCTGGCTTTCGCGGTCCCAGGGGAAACTGACTTTTACCCGGCCCCATTCATCGCAGTAGATTTCCTCGCCAGGCGGGCcga > 6:161420/1‑149 (MQ=32) cATCGAGCCCCAGCTGCCACCCGCCCAGCCTTGAGACACCCGCAGCCAGCACGAACTGAACTCGTTGTTCTGGCTTTCGCGGTCCCAGGGGAAACTGACTTTTACCCGGCCCCATTCATCGCAGTAGATTTCCTCGCCAGGCGGGCcga > 7:30669/1‑149 (MQ=32) ccccAGCTGCCACCCGCCCAGCCTTGAGACACCCGCAGCCAGCACGAACTGAACTCGTTGTTCTGGCTTTCGCGGTCCCAGGGGAAACTGACTTTTACCCGGCCCCATTCATCGCAGTAGATTTCCTCGCCAGGCGGGCCGACGACGGt > 4:114674/1‑149 (MQ=32) cAGCTGCCACCCGCCCAGCCTTGAGACACCCGCAGCCAGCACGAACTGAACTCGTTGTTCTGGCTTTCGCGGTCCCAGGGGAAACTGACTTTTACCCGGCCCCATTCATCGCAGTAGATTTCCTCGCCAGGCGGGCCGACGACGGTGGc > 8:93385/1‑149 (MQ=32) ccACCCGCCCAGCCTTGAGACACCCGCAGCCAGCACGAACTGAACTCGTTGTTCTGGCTTTCGCGGTCCCAGGGGAAACTGACTTTTACCCGGCCCCATTCATCGCAGTAGATTTCCTCGCCAg > 1:263388/1‑124 (MQ=32) aCCCGCCCAGCCTTGAGACACCCGCAGCCAGCACGAACTGAACTCGTTGTTCTGGCTTTCGCGGTCCCAGGGGAAACTGACTTTTACCCGGCCCCATTCATCGCAGTAGATTTCCTCGCCAGGCGGGCCGACGACGGTGGCCATGTGCg > 8:121676/1‑149 (MQ=11) | TGACGGGGAAGGTCGTACGGTGGCAGCTGGTTGCCGCAGTAAGTACGGCCGGTGATCATCGGCTGATCGGGGTCGCCGTTGACGTAATGGATGATCACGTCCTGGCCGATCCGGGGGATGGCCATCGAGCCCCAGCTGCCACCCGCCCAGCCTTGAGACACCCGCAGCCAGCACGAACTGAACTCGTTGTTCTGGCTTTCGCGGTCCCAGGGGAAACTGACTTTTACCCGGCCCCATTCATCGCAGTAGATTTCCTCGCCAGGCGGGCCGACGACGGTGGCCATGTGCG > NC_002947/2990017‑2990305 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |