New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	3010263 =	46 (0.880)	3 (0.060)	3/250	NT	6.7%	intergenic (‑1169/‑499)	PP_2628/PP_2631	ABC transporter ATP‑binding protein/cellulose biosynthesis protein BcsF/YhjT
	?	NC_002947	3010295 =	41 (0.840)					intergenic (‑1201/‑467)	PP_2628/PP_2631	ABC transporter ATP‑binding protein/cellulose biosynthesis protein BcsF/YhjT

ACCAGCAACTGGTGGACGATTTCGCCGTTGCGCACCCCGTGCCACATGCTTTGCACGGCATCGGCGAACGCCCGTGGCGCTACCAACCCGCAGATGGCCAGCGGCCGCAGGCGTGCCAGCAAGGCGTCGAAGTCGGTTGGCAGGTGTCGACGCC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/3010416‑3010263 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tcgacgccTTGCTGGCACGCCTGCGGCCGCTGGCCATCTGCGGGTTGGTAGCGCCACGGGCGTTCGCCGATGCCGTGCAAAGCATGTGGCACGGGGTGCGCAACGGCGAAATCGTCCACCAGTTGCTGGTGTTGCGTCCGGCGCCTGGCCTGA  >  NC_002947/3010295‑3010439                                                                                                                                                                                                                                                                                                             ACCAGCAACTGGTGGACGATTTCGCCGTTGCGCACCCCGTGCCACATGCTTTGCACGGCATCGGCGAACGCCCGTGGCGCTACCAACCCGCAGATGGCCAGCGGCCGCAGGCGTGCCAGCAAGGCGTCGAAGTCGGTTGGCAGGTGTC                                                                                                                                                         >  1:46960/1‑148   CAGCAACTGGTGGACGATTTCGCCGTTGCGCACCCCGTGCCACATGCTTTGCACGGCATCGGCGAACGCCCGTGGCGCTGCCAACCCGCAGATGGCCAGCGGCCGCAGGCGTGCCAGCAAGGCGTCGAAGTCGGTTGGCAGGTGTCGAC                                                                                                                                                      >  2:252593/1‑149   CAGCAACTGGTGGACGATTTCGCCGTTGCGCACCCCGTGCCACATGCATTGCACGGCATCGGCGAACGCCCGTGGCGCTACCAACCCGCAGATGGCCAGCGGCCGCAGGCGTGCCAGCAAGGCGTCGAAGTCGGTAGGCAGGTGTCGAC                                                                                                                                                      >  1:70847/1‑149                                                                                                                    CCAGCAAGGCGTCGAAGTCGGTTGGCAGGTGTCGACGCCTTGCTGGCACGCCTGCGGCCGCTGGCCATCTGCGGGTTGGTAGCGCCACGGGCGTTCGCCGATGCCGTGCAAAGCATGTGGCACGGGGTGCGCAACGGCGAAATCGTCCA                                     >  6:35122/1‑149                                                                                                                           GGCGTCGAAGTCGGTTGGCAGGTGTCGACGCCTTGCTGGCACGCCTGCGGCCGCTGGCCATCTGCGGGTTGGTAGCGCCACGGGCGTTCGCCGATG                                                                                   <  1:172497/96‑1                                                                                                                           GGCGTCGAAGTCGGTTGGCAGGTGTCGACGCCTTGCTGGCACGCCTGCGGCCGCTGGCCATCTGCGGGTTGGTAGCGCCACGGGCGTTCGCCGATG                                                                                   >  2:172497/1‑96                                                                                                                                                    CGACGCCTTGCTGGCACGCCTGCGGCCGCTGGCCATCTGCGGGTTGGTAGCGCCACGGGCGTTCGCCGATGCCGTGCAAAGCATGTGGCACGGGGTGCGCAACGGCGAAATCGTCCACCAGTTGCTGGTGTTGCGTCCGGCGCCTGGC      <  8:67937/148‑1                                                                                                                                                       CGCCTTGCTGGCACGCCTGCGGCCGCTGGCCATCTGCGGGTTGGTAGCGCCACGGGCGTTCGCCGATGCCGTGCAAAGCATGTGGCACGGGGTGCGCAACGGCGAAATCGTCCACCAGTTGCTGGTGTTGCGTCCGGCGCCTGGCCTGA  >  4:221086/1‑149                                                                                                                                                                                                                                                                                                             ACCAGCAACTGGTGGACGATTTCGCCGTTGCGCACCCCGTGCCACATGCTTTGCACGGCATCGGCGAACGCCCGTGGCGCTACCAACCCGCAGATGGCCAGCGGCCGCAGGCGTGCCAGCAAGGCGTCGAAGTCGGTTGGCAGGTGTCGACGCC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/3010416‑3010263 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tcgacgccTTGCTGGCACGCCTGCGGCCGCTGGCCATCTGCGGGTTGGTAGCGCCACGGGCGTTCGCCGATGCCGTGCAAAGCATGTGGCACGGGGTGCGCAACGGCGAAATCGTCCACCAGTTGCTGGTGTTGCGTCCGGCGCCTGGCCTGA  >  NC_002947/3010295‑3010439

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.