New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	3010263 =	46 (0.880)	3 (0.060)	3/250	NT	6.7%	intergenic (‑1169/‑499)	PP_2628/PP_2631	ABC transporter ATP‑binding protein/cellulose biosynthesis protein BcsF/YhjT
	?	NC_002947	3010295 =	41 (0.840)					intergenic (‑1201/‑467)	PP_2628/PP_2631	ABC transporter ATP‑binding protein/cellulose biosynthesis protein BcsF/YhjT

GAAGCTGGTCGTGCGCGAAATGGCGTCGACCCTGCGTTATCAAGACGAACAGTTGCTGCTGGCTTGTGGTGCCAGCCAGATCGTGCCGTTCGGT‑GCCAGCTTGTCACGCTTCCTGACCATGGTAGAGAGCATCCAGGGTTACGTCTGGCGTCGACACCTGCCAACCGACTTCGACGCCTTGCTGGCACGCCTGCGGCCGCTGGCCATCTGCGGGTTGGTAGCGCCACGGGCGTTCGCCGATGCCGTGCAAAGCATGTGGCACGGGGTGCGCAACGGCGAAATCGTCC  >  NC_002947/3010117‑3010403                                                                                                                                                    |                                                                                                                                             gAAGCTGGTCGTGCGCGAAATGGCGTCGACCCTGCGTTATCAAGACGAACAGTTGCTGCTGGCTTGTGGTGCCAGCCAGATCGTGCCGTTCGGT‑GCCAGCTTGTCACGCTTCCTGACCATGGTAGAGAGCATCCAGGGTTACGTCTg                                                                                                                                              <  4:72062/147‑1 (MQ=255)  aaGCTGGTCGTGCGCGAAATGGCGTCGACCCCGCGTTATCAAGACGAACAGTTGCTGCTGGCTTGTGGTGCCAGCCAGATCGTGCCGTTCGGT‑GCCAGCTTGTCACGCTTCCTGACCATGGTAGAGAGCATCCAGGGTTACGTCTGGc                                                                                                                                            <  8:40777/148‑1 (MQ=255)   tcaggccaggcgccggacgcaacaccagcaactggtggacgatttcgccgttgcgcaccccgtgccacatgctttgcacggcatcggcgaacgcccgtggcgctaccaacccgcagatggccagcggccgcaggcgtgccagcaaGGCg                                                                                                                                           >  4:221086‑M1/146‑149 (MQ=255)       gccaggcgccggacgcaacaccagcaactggtggacgatttcgccgttgcgcaccccgtgccacatgctttgcacggcatcggcgaacgcccgtggcgctaccaacccgcagatggccagcggccgcaggcgtgccagcaaGGCGTCg                                                                                                                                        <  8:67937‑M1/7‑1 (MQ=255)        gTCGTGCGCGAAATGGCGTCGACCCTGCGTTATCAAGACGAACAGTTGCTGCTGGCTTGTGGTGCCAGCCAGATCGTGCCGTTCGGT‑GCCAGCTTGTCACGCTTCCTGACCATGGTAGAGAGCATCCAGGGTTACGTCTGGCGTCGaca                                                                                                                                     >  7:302990/1‑149 (MQ=255)            tGCGCGAAATGTCGTCGACCCTGCGTTATGAAGACGAACAGTTGCTGCTGGCTTGTGGTGCCAGCCAGATCGTGCCGTTCGGT‑GCCAGCTTGTCACGCTTGCTGACCATGGTAGAGAGCATCCATGGTTACGTCTGGCGTCGACACCTg                                                                                                                                 <  6:138494/149‑1 (MQ=255)                       gCGTCGACCCTGCGTTATCAAGACGAACAGTTGCTGCTGGCTTGTGGTGCCAGCCAGATCGTGCCGTTCGGT‑GCCAGCTTGTCACGCTTCCTGACCATGGTAGAGAGCATCCAGGGTTACGTCTGGCGTCGACACCTGCCAACCGACt                                                                                                                       <  8:302990/148‑1 (MQ=255)                         gTCGACCCTGCGTTATCAAGACGAACAGTTGCTGCTGGCTTGTGGTGCCAGCCAGATCGTGCCGTTCGGT‑GCCAGCTTGTCACGCTTCCTGACCATGGTAGAGAGCATCCAGGGTTACGTCTGGCGTCGACACCTGCCAACCGACTTCg                                                                                                                    <  5:116891/149‑1 (MQ=255)                          tCGACCCTGCGTTATCAAGACGAACAGTTGCTGCTGGCTTGTGGTGCCAGCCAGATCGTGCCGTTCGGT‑GCCAGCTTGTCACGCTTCCTGACCATGGTAGAGAGCATCCAGGGTTACGTCTGGCGTCGACACCTGCCAACCGACTTCGa                                                                                                                   <  6:17404/149‑1 (MQ=255)                            gACCCTGCGTTATCAAGACGAACAGTTGCTGCTGGCTTGTGGTGCCAGCCAGATCGTGCCGTTCGGT‑GCCAGCTTGTCACGCTTCCTGACCATGGTAGAGAGCATCCAGGGTTACGTCTGGCGTCGACACCTGCCAACCGACTTCGAc                                                                                                                  <  1:300545/148‑1 (MQ=255)                            gACCCTGCGTTATCAAGACGAACAGTTGCTGCTGGCTTGTGGTGCCAGCCAGATCGTGCCGTTCGGT‑GCCAGCTTGTCACGCTTCCTGACCATGGTAGAGAGCATCCAGGGTTACGTCTGGCGTCGACACCTGCCAACCGACTTCGAc                                                                                                                  <  8:123244/148‑1 (MQ=255)                            gACCCTGCGTTATCAAGACGAACAGTTGCTGCTGGCTTGTGGTGCCAGCCAGATCGTGCCGTTCGGT‑GCCAGCTTGTCACGCTTCCTGACCATGGTAGAGAGCATCCAGGGTTACGTCTGGCGTCGACACCTGCCAACCGACTTCGACg                                                                                                                 <  3:240349/149‑1 (MQ=255)                                cTGCGTTATCAAGACGAACAGTTGCTGCTGGCTTGTGGTGCCAGCCAGATCGTGCCGTTCGGT‑GCCAGCTTGTCACGCTTCCTGACCATGGTAGAGAGCATCCAGGGTTACGTCTGGCGTCGACACCTGCCAACCGACTTCGACGCCtt                                                                                                             >  6:206276/1‑149 (MQ=255)                                cTGCGTTATCAAGACGAACAGTTGCTGCTGGCTTGTGGTGCCAGCCAGATCGTGCCGTTCGGT‑GCCAGCTTGTCACGCTTCCTGACCATGGTAGAGAGCATCCAGGGTTACGTCTGGCGTCGACACCTGCCAACCGACTTCGACGCCtt                                                                                                             >  4:143875/1‑149 (MQ=255)                                   cGTTATCAAGACGAACAGTTGCTGCTGGCTTGTGGTGCCAGCCAGATCGTGCCGTTCGGT‑GCCAGCTTGTCACGCTTCCTGACCATGGTAGAGAGCATCCAGGGTTACGTCTGGCGTCGACACCTGCCAACCGACTTCGACGCCTTGc                                                                                                           <  1:115060/148‑1 (MQ=255)                                    gTTATCAAGACGAACAGTTGCTGCTGGCTTGTGGTGCCAGCCAGATCGTGCCGTTCGGT‑GCCAGCTTGTCACGCTTCCTGACCATGGTAGAGAGCATCCAGGGTTACGTCTGGCGTCGACACCTGCCAACCGACTTCGACGCCTTGCTg                                                                                                         <  5:237025/149‑1 (MQ=255)                                    gTTATCAAGACGAACAGTTGCTGCTGGCTTGTGGTGCCAGCCAGATCGTGCCGTTCGGT‑GCCAGCTTGTCACGCTTCCTGACCATGGTAGAGAGCATCCAGGGTTACGTCTGGCGTCGACACCTGCCAACCGACTTCGACGCCTTGCTg                                                                                                         >  7:229815/1‑149 (MQ=255)                                    cttATCAAGCCGAACAGTTGCTGCTGGCTTGTGGGGCCAGCCAGATCGTGCCGTTCGGT‑GCCAGCTTGTGACGCTTCCTGACCATGGTAGAGAGCATCCAGGGTTACGTCTGGCGTCGACACCTGCCAACCGACTTCGACGCCTTGCTg                                                                                                         <  4:39264/148‑1 (MQ=255)                                     ttATCAAGACGAACAGTTGCTGCTGGCTTGTGGTGCCAGCCAGATCGTGCCGTTCGGT‑GCCAGCTTGTCACGCTTCCTGACCATGGTAGAGAGCATCCAGGGTTACGTCTGGCGTCGACACCTGCCAACCGACTTCGACGCCTTGCTgg                                                                                                        >  3:101794/1‑149 (MQ=255)                                      tggacgatttcgccgttgcgcaccccgtgccacatgctttgcacggcatcggcgaacgcccgtggcgctaccaacccgcagatggccagcggccgcaggcgtgccagcaaGGCGTCGACACCTGCCAACCGACTTCGACGCCTTGCTgg                                                                                                        >  6:35122‑M1/111‑149 (MQ=255)                                        tCAAGACGAACAGTTGCTGCTGGCTTGTGGTGCCAGCGAGATCGTGCCGTTCGGTGGACAGCTTGTCACGCTTCCTGACCATGGTAGAGAGCATCCAGGGTTACGTCTGGCGTCGACACCTGCCAACCGACTTCGACGCCTTGCTGGCa                                                                                                      >  1:252593/1‑149 (MQ=255)                                            gACGAACAGTTGCTGCTGGCTTGTGGTGCCAGCGAGATCGTGCCGTTCGGT‑GCCAGCTTGTCACGCTTCCTGACCATGGTAGAGAGCATCCAGGGTTACGTCTGGCGTCGACACCTGCCAACCGACTTCGACGCCTTGCTGGCACGCCt                                                                                                 <  4:16379/149‑1 (MQ=255)                                             aCGAACAGTTGCTGCTGGCTTGTGGTGCCAGCCAGATCGTGCCGTTCGGT‑GCCAGCTTGTCACGCTTCCTGACCATGGTAGAGAGCATCCAGGGTTACGTCTGGCGTCGACACCTGCCAACCGACTTCGACGCCTTGCTGGCACGCCTg                                                                                                >  4:137060/1‑149 (MQ=255)                                              cGAACAGTTGCTGCTGGCTTGTGGTGCCAGCCAGATCGTGCCGTTCGGT‑GCCAGCTTGTCACGCTTCCTGACCATGGTAGAGAGCATCCAGGGTTACGTCTGGCGTCGACACCTGCCAACCGACTTCGACGCCTTGCTGGCACGCCTGc                                                                                               <  7:23514/149‑1 (MQ=255)                                                     ttGCTGCTGGCTTGTGGTGCCAGCCAGATCGTGCCGTTCGGT‑GCCAGCTTGTCACGCTTCCTGACCATGGTAGAGAGCATCCAGGGTTACGTCTGGCGTCGACACCTGCCAACCGACTTCGACGCCTTGCTGGCACGCCTGCGGCCGCt                                                                                        >  7:269599/1‑149 (MQ=255)                                                        ctgctgGCTTGTGGTGCCAGCCAGATCGTGCCGTTCGGT‑GCCAGCTTGTCACGCTTCCTGACCATGGTAGAGAGCATCCAGGGTTACGTCTGGCGTCGACACCTGCCAACCGACTTCGACGCCTTGCTGGCACGCCTGCGGCCGCTgg                                                                                      <  3:143875/148‑1 (MQ=255)                                                        ctgctgGCTTGTGGTGCCAGCCAGATCGTGCCGTTCGGT‑GCCAGCTTGTCACGCTTCCTGACCATGGTAGAGAGCATCCAGGGTTACGTCTGGCGTCGACACCTGCCAACCGACTTCGACGCCTTGCTGGCACGCCTGCGGCCGCTGGc                                                                                     <  2:55752/149‑1 (MQ=255)                                                                     gtgCCAGCCAGATCGTGCCGTTCGGT‑GCCAGCTTGTCACGCTTCCTGACCATGGTAGAGAGCATCCAGGGTTACGTCTGGCGTCGACACCTGCCAACCGACTTCGACGCCTTGCTGGCACGCCTGCGGCCGCTGGCCATCTGCGGGTTg                                                                        >  6:29589/1‑149 (MQ=255)                                                                      ttccagccagATCGTGCCGTTCTGT‑GCCAGCTTGTCACGCTTCCTGACCATTGTAGAGAGCATCCAGGGTTACGTCTGGCGTCGACACCTGCCAACCGACTTCAACGCCTTGCTGGCACGCCTGCGGCCGCTGGCCATCTACGGGTTgg                                                                       <  4:205365/147‑1 (MQ=255)                                                                      tgCCAGCCAGATCGTGCCGTTCGGT‑GCCAGCTTGTCACGCTTCCTGACCATGGTAGAGAGCATCCAGGGTTACGTCTGGCGTCGACACCTGCCAACCGACTTCGACGCCTTGCTGGCACGCCAGCGGCCGCAGGcgtgcc                                                                                <  4:87003/140‑6 (MQ=255)                                                                      tgCCAGCCAGATCGTGCCGTTCGGT‑GCCAGCTTGTCACGCTTCCTGACCATGGTAGAGAGCATCCAGGGTTACGTCTGGCGTCGACACCTGCCAACCGACTTCGACGCCTTGCTGGCACGCCAGCGGCCGCAGGcgtgcc                                                                                >  3:87003/1‑135 (MQ=255)                                                                         cagccagATCGTGCCGTTCGGT‑GCCAGCTTGTCACGCTTCCTGACCATGGTAGAGAGCATCCAGGGTTACGTCTGGCGTCGACACCTGCCAACCGACTTCGACGCCTTGCTGGCACGCCTGCGGCCGCTGGCCATCTGCGGGTTGGTAg                                                                    >  6:197562/1‑149 (MQ=255)                                                                          agccagATCGTGCCGTTCGGT‑GCCAGCTTGTCACGCTTCCTGACCATGGTAGAGAGCATCCAGGGTTACGTCTGGCGTCGACACCTGCCAACCGACTTCGACGCCTTGCTGGCACGCCTGCGGCCGCTGGCCATCTGCGGGTTGGTAgc                                                                   <  5:197562/149‑1 (MQ=255)                                                                           gccagATCGTGCCGTTCGGT‑GCCAGCTTGTCACGCTTCCTGACCATGGTAGAGAGCATCCAGGGTTACGTCTGGCGTCGACACCTGCCAACCGACTTCGACGCCTTGCTGGCACGCCTGCGGCCGCTGGCCATCTGCGGGTTGGTAgcg                                                                  <  8:269599/149‑1 (MQ=255)                                                                              agATCGTGCCGTTCGGT‑GCCAGCTTGTCACGCTTCCTGACCATGGTAGAGAGCATCCAGGGTTACGTCTGGCGTCGACACCTGCCAACCGACTTCGACGCCTTGCTGGCACGCCTGCGGCCGCTGGCCATCTGCGGGTTGGTAGCGCCa                                                               >  2:277435/1‑149 (MQ=255)                                                                                 tCGTGCCGTTCGGT‑GCCAGCTTGTCACGCTTCCTGACCATGGTAGAGAGCATCCAGGGTTACGTCTGGCGTCGACACCTGCCAACCGACTTCGACGCGTTGCTGGCACGCCTGCGGCCGCTGGCCATCTGCGGGTTGGTAGCGCCACgg                                                            <  3:314041/149‑1 (MQ=255)                                                                                   gTGCCGTTCGGG‑GCCAGCTTGTCACGCTTCCTGACCATGGTAGAGAGCATCCAGGGTTACGTCTGGCGTCGACACCTGCCAACCGACTTCGACGCCTTGCTGGCACGCCTGCGGCCGCTGGCCATCTGCGGGTTGGTAGCGCCACGGGc                                                          <  4:83537/149‑1 (MQ=255)                                                                                    tGCCGTTCGGT‑GCCAGCTTGTCACGCTTCCTGACCATGGTAGAGAGCATCCAGGGTTACGTCTGGCGTCGACACCTGCCAACCGACTTCGACGCCTTGCTGGCACGCCTGCGGCCGCTGGCCATCTGCGGGTTGGTAGCGCCACGGGCg                                                         >  6:202523/1‑149 (MQ=255)                                                                                    catcggcgaacgcccgtggcgctaccaacccgcagatggccagcggccgcaggcgtgccagcaaGGCGTCGACACCTGCCAACCGACTTCGACGcc                                                                                                               <  1:172497‑M1/32‑1 (MQ=255)                                                                                    catcggcgaacgcccgtggcgctaccaacccgcagatggccagcggccgcaggcgtgccagcaaGGCGTCGACACCTGCCAACCGACTTCGACGcc                                                                                                               >  2:172497‑M1/65‑96 (MQ=255)                                                                                      ccGTTCGGT‑GCCAGCTTGTCACGCTTCCTGACCATGGTAGAGAGCATCCAGGGTTACGTCTGGCGTCGACACCTGCCAACCGACTTCGACGCCTTGCTGGCACGCCTGCGGCCGCTGGCCATCTGCGGGTTGGTAGCGCCACGGGCGtt                                                       >  2:78608/1‑149 (MQ=255)                                                                                      ccGTTCGGT‑GCCAGCTTGTCACGCTTCCTGACCATGGTAGAGAGCATCCAGGGTTACGTCTGGCGTCGACACCTGCCAACCGACTTCGACGCCTTGCTGGCACGCCTGCGGCCGCTGGCCATCTGCGGGTTGGTAGCGCCACGGGCGt                                                        <  5:199086/148‑1 (MQ=255)                                                                                             gT‑GCCAGCTTGTCACGCTTCCTGACCATGGTAGAGAGCATCCAGGGTTACGTCTGGCGTCGACACCTGCCAACCGACTTCGACGCCTTGCTGGCACGCCTGCGGCCGCTGGCCATCTGCGGGTTGGTAGCGCCACGGGCGTTCGCCGAt                                                <  5:29589/149‑1 (MQ=255)                                                                                                  cAGCTTGTCACGCTTCCTGACCATGGTAGAGAGCATCCAGGGTTACGTCTGGCGTCGACACCTGCCAACCGACTTCGACGCCTTGCTGGCACGCCTGCGGCCGCTGGCCATCTGCGGGTTGGTAGCGCCACGGGCGTTCGCCGATGCCg                                            <  5:202523/149‑1 (MQ=255)                                                                                                      ttGTCACGCTTCCTGACCATGGTAGAGAGCATCCAGGGTTACGTCTGGCGTCGACACCTGCCAACCGACTTCGACGCCTTGCTGGCACGCCTGCGGCCGCTGGCCATCTGCGGGTTGGTAGCGCCACGGGCGTTCGCCGATGCCGTGc                                         >  7:67937/1‑148 (MQ=255)                                                                                                           aCGCTTCCTGACCATGGTAGAGAGCATCCAGGGTTACGTCTGGCGTCGACACCTGCCAACCGACTTCGACGCCTTGCTGGCACGCCTGCGGCCGCTGGCCATCTGCGGGTTGGTAGCGCCACGGGCGTTCGCCGATGCCGTGCAAAGCa                                   >  2:46960/1‑149 (MQ=255)                                                                                                             gCTTCCTGACCATGGTAGAGAGCATCCAGGGTTACGTCTGGCGTCGACACCTGCCAACCGACTTCGACGCCTTGCTGGCACGCCTGCGGCCGCTGGCCATCTGCGGGTTGGTAGCGCCACGGGCGTTCGCCGATGCCGTGCAAAGCAtg                                 <  5:206276/149‑1 (MQ=255)                                                                                                             gCTTCCTGACCATGGTAGAGAGCATCAAGGGTTACGTCTGGCGTCGACACATGCCAACCGACTTCGACGCCTTGCTGGCACGCCTGCGGCCGCTGGCCATCTGCGGGTTGGTAGCGCCACGGGCGTTCGCCGATGCCGTGCAAAGCAtg                                 >  2:70847/1‑149 (MQ=255)                                                                                                                    gACCATGGTAGAGAGCATCCAGGGTTACGTCTGGCGTCGACACCTGCCAACCGACTTCGACGCCTTGCTGGCACGCCTGCGGCCGCTGGCCATCTGCGGGTTGGTAGCGCCACGGGCGTTCGCCGATGCCGTGCAAAGCATGTGGCACg                          >  3:293511/1‑149 (MQ=255)                                                                                                                            tAGAGAGCATCCAGGGTTACGTCTGGCGTCGACACCTGCCAACCGACTTCGACGCCTTGCTGGCACGCCTGCGGCCGCTGGCCATCTGCGGGTTGGTAGCGCCACGGGCGTTCGCCGATGCCGTGCAAAGCATGTGGCACGGGGTgcg                   >  6:104314/1‑148 (MQ=255)                                                                                                                                      ccAGGGTTACGTCTGGCGTCGACACCTGCCAACCGACTTCGACGCCTTGCTGGCACGCCTGCGGCCGCTGGCCATCTGCGGGTTGGTAGCGCCACGGGCGTTCGCCGATGCCGTGCAAAGCATGTGGCACGGGGTGCGCAACGGCGaaa        >  7:31145/1‑149 (MQ=255)                                                                                                                                        aGGGTTACGTCTGGCGTCGACACCTGCCAACCGACTTCGACGCCTTGCTGGCACGCCTGCGGCCGCTGGCCATCTGCGGGTTGGTAGCGCCACGGGCGTTCGCCGATGCCGTGCAAAGCATGTGGCACGGGGTGCGCAACGGCGAAATc      >  7:233043/1‑149 (MQ=255)                                                                                                                                            ttACGTCTGGCGTCGACACCTGCCAACCGACTTCGACGCCTTGCTGGCACGCCTGCGGCCGCTGGCCATCTGCGGGTTGGTAGCGCCACGGGCGTTCGCCGATGCCGTGCAAAGCATGTGGCACGGGGTGCGCAACGGCGAAATCGTcc  <  1:277435/149‑1 (MQ=255)                                                                                                                                                    |                                                                                                                                             GAAGCTGGTCGTGCGCGAAATGGCGTCGACCCTGCGTTATCAAGACGAACAGTTGCTGCTGGCTTGTGGTGCCAGCCAGATCGTGCCGTTCGGT‑GCCAGCTTGTCACGCTTCCTGACCATGGTAGAGAGCATCCAGGGTTACGTCTGGCGTCGACACCTGCCAACCGACTTCGACGCCTTGCTGGCACGCCTGCGGCCGCTGGCCATCTGCGGGTTGGTAGCGCCACGGGCGTTCGCCGATGCCGTGCAAAGCATGTGGCACGGGGTGCGCAACGGCGAAATCGTCC  >  NC_002947/3010117‑3010403

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.