| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_002947 | = 3209806 | 33 (0.630) | 3 (0.060) | 3/244 | NT | 8.5% | intergenic (+67/+50) | PP_2813/PP_2814 | BNR domain‑containing protein/hypothetical protein |
| ? | NC_002947 | = 3209831 | 34 (0.710) | intergenic (+92/+25) | PP_2813/PP_2814 | BNR domain‑containing protein/hypothetical protein | |||||
GTTGTTCAACGCCGAAGGTGTACCTGTATTGTTTTCACGCCGAGGGGTAATGCCCTACCAGGAGTGAAGGGTTGGCCACTCGCTCAGAAGCCAGGCATCGCAAACCGATGCCTGGCCTGTTTTCTTGCCTGGGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_002947/3209673‑3209806‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cttgcctgggcCTGAAGGTGCCACGACCACCCATTCGCCCAGGCAAGAAAACAGGCCAGGCATCGGTTTGCGATGCCTGGCTTCTGAGCGAGTGGCCAACCCTTCACTCCTGGTAGGGCATTACCCCTCGGCGTGAAAACAATACAGGTACACCTTCG < NC_002947/3209831‑3209685 GTTGTTCAACGCCGAAGGTGTACCTGTATTGTTTTCACGCCGAGGGGTAATGCCCTACCAGGAGTGAAGGGTTGGCCACTCGCTCAGAAGCCAGGCATCGCAAACCGATGCCTGGCCTGTTTTCTTGCCTGG < 3:269943/132‑1GTTGTTCAACGCCGAAGGTGTACCTGTATTGTTTTCACGCCGAGGGGTAATGCCCTACCAGGAGTGAAGGGTTGGCCACTCGCTCAGAAGCCAGGCATCGCAAACCGATGCCTGGCCTGTTTTCTTGCCTGG > 4:269943/1‑132 GGTGTACCTGTATTGTTTTCACGCCGAGGGGTAATGCCCTACCAGGAGTGAAGGGTTGGCCACTCGCTCAGAAGCCAGGCATCGCAAACCGATGCCTGGCCTGTTTTCTTGCCTGGGCCTGAAGGTGCCACGACCACCCATTCGCCCAG < 7:56726/149‑1 TATTGTTTTCACGCCGAGGGGTAATGCCCTACCAGGAGTGAAGGGTTGGCCACTCGCTCAGAAGCCAGGCATCGCAAACCGATGCCTGGCCTGTTTTCTTGCCTGGGCCTGAAGGTGCCACGACCACCCATTCGCCCAGGCAAGA > 5:312660/1‑145 TATTGTTTTCACGCCGAGGGGTAATGCCCTACCAGGAGTGAAGGGTTGGCCACTCGCTCAGAAGCCAGGCATCGCAAACCGATGCCTGGCCTGTTTTCTTGCCTGGGCCTGAAGGTGCCACGACCACCCATTCGCCCAGGCAAGA < 6:312660/145‑1 TTGCCTGGGCCTGAAGGTGCCACGACCACCCATTCGCCCAGGCAAGAAAACAGGCCAGGCATCGGTTTGCGATGCCTGGCTTCTGAGCGAGTGGCCAACCCTTCACTCCTGGTAGGGCATTACCCCTCGGCGTGAAAACAATACAGGT > 8:134620/1‑148 GCCTGGGCCTGAAGGTGCCACGACCACCCATTCGCCCAGGCAAGAAAACAGGCCAGGCATCGGTTTGCGATGCCTGGCTTCTGAGCGAGTGGCCAACCCTTCACTCCTGGTAGGGCATTACCCCTCGGCGTGAAAACAA > 5:167704/1‑139 GCCTGGGCCTGAAGGTGCCACGACCACCCATTCGCCCAGGCAAGAAAACAGGCCAGGCATCGGTTTGCGATGCCTGGCTTCTGAGCGAGTGGCCAACCCTTCACTCCTGGTAGGGCATTACCCCTCGGCGTGAAAACAA < 6:167704/139‑1 GGGCCTGAAGGTGCCACGACCACCCATTCGCCCAGGCAAGAAAACAGGCCAGGCATCGGTTTGCGATGCCTGGCTTCTGAGCGAGTGGCCAACCCTTCACTCCTGGTAGGGCATTACCCCTCGGCGTGAAAACAATACAGGTACACCTT > 5:172378/1‑149 GGCCTGAAGGTGCCACGACCACCCATTCGCCCAGGCAAGAAAACAGGCCAGGCATCGGTTTGCGATGCCTGGCTTCTGAGCGAGTGGCCAACCCTTCACTCCTGGTAGGGCATTACCCCTCGGCGTGAAAACAATACAGGTACACCTTC < 6:258929/149‑1 GCCTGAAGGTGCCACGACCACCCATTCGCCCAGGCAAGAAAACAGGCCAGGCATCGGTTTGCGATGCCTGGCTTCTGAGCGAGTGGCCAACCCTTCACTCCTGGTAGGGCATTACCCCTCGGCGTGAAAACAATACAGGTACACCTTCG < 1:136888/149‑1 GTTGTTCAACGCCGAAGGTGTACCTGTATTGTTTTCACGCCGAGGGGTAATGCCCTACCAGGAGTGAAGGGTTGGCCACTCGCTCAGAAGCCAGGCATCGCAAACCGATGCCTGGCCTGTTTTCTTGCCTGGGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_002947/3209673‑3209806‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cttgcctgggcCTGAAGGTGCCACGACCACCCATTCGCCCAGGCAAGAAAACAGGCCAGGCATCGGTTTGCGATGCCTGGCTTCTGAGCGAGTGGCCAACCCTTCACTCCTGGTAGGGCATTACCCCTCGGCGTGAAAACAATACAGGTACACCTTCG < NC_002947/3209831‑3209685 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |