New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 3209806	33 (0.630)	3 (0.060)	3/244	NT	8.5%	intergenic (+67/+50)	PP_2813/PP_2814	BNR domain‑containing protein/hypothetical protein
	?	NC_002947	= 3209831	34 (0.710)					intergenic (+92/+25)	PP_2813/PP_2814	BNR domain‑containing protein/hypothetical protein

CGAAGGTGTACCTGTATTGTTTTCACGCCGAGGGGTAATGCCCTACCAGGAGTGAAGGGTTGGCCACTCGCTCAGAAGCCAGGCATCGCAAACCGATGCCTGGCCTGTTTTCTTGCCTGGGCGAATGGGTGGTCGTGGCACCTTCAGGCCCAGGCAAGTCAACGCTGGACGCTAGAGCTGAAGGTAATCCGCCAGGTCTGCGTAGTTATGTTGCCAAAGGCCAGGGCTGCCATTGGGGTATTGGGAGCGGAAACCGAGGATCTTCTGTACCCGCGGAGAAAGCGTGCG  >  NC_002947/3209685‑3209972                                                                                                                                                   |                                                                                                                                              cGAAGGTGTACCTGTATTGTTTTCACGCCGAGGGGTAATGCCCTACCAGGAGTGAAGGGTTGGCCACTCGCTCAGAAGCCAGGCATCGCAAACCGATGCCTGGCCTGTTTTCTTGCCTGGGCGAATGGGTGGTCGTGGCACCTTCAGgc                                                                                                                                             <  1:136888‑M2/149‑3 (MQ=255)  gAAGGTGTACCTGTATTGTTTTCACGCCGAGGGGTAATGCCCTACCAGGAGTGAAGGGTTGGCCACTCGCTCAGAAGCCAGGCATCGCAAACCGATGCCTGGCCTGTTTTCTTGCCTGGGCGAATGGGTGGTCGTGGCACCTTCAGgcc                                                                                                                                            <  6:258929‑M2/149‑4 (MQ=255)   aaGGTGTACCTGTATTGTTTTCACGCCGAGGGGTAATGCCCTACCAGGAGTGAAGGGTTGGCCACTCGCTCAGAAGCCAGGCATCGCAAACCGATGCCTGGCCTGTTTTCTTGCCTGGGCGAATGGGTGGTCGTGGCACCTTCAGgccc                                                                                                                                           >  5:172378‑M2/1‑145 (MQ=255)          aCCTGTATTGTTTTCACGCCGAGGGGTAATGCCCTACCAGGAGTGAAGGGTTGGCCACTCGCTCAGAAGCCAGGCATCGCAAACCGATGCCTGGCCTGTTTTCTTGCCTGGGCGAATGGGTGGTCGTGGCACCTTCAGgcccaggcaa                                                                                                                                     >  8:134620‑M2/1‑138 (MQ=255)            cTGTATTGTTTTCACGCCGAGGGGTAATGCCCTACCAGGAGTGAAGGGTTGGCCACTCGCTCAGAAGCCAGGCATCGCAAACCGATGCCTGGCCTGTTTTCTTGCCTGGGCGAATGGGTGGTCGTGGCACCTTCAGGCCCAGGCAAGt                                                                                                                                   >  5:41934/1‑148 (MQ=255)              gTATTGTTTTCACGCCGAGGGGTAATGCCCTACCAGGAGTGAAGGGTTGGCCACTCGCTCAGAAGCCAGGCATCGCAAACCGATGCCTGGCCTGTTTTCTTGCCTGGGCGAATGGGTGGTCGTGGCACCTTCAGGCCCAGGCAAGTCa                                                                                                                                 >  5:199293/1‑148 (MQ=255)                 ttGTTTTCACGCCGAGGGGTAATGCCCTACCAGGAGTGAAGGGTTGGCCACTCGCTCAGAAGCCAGGCATCGCAAACCGATGCCTGGCCTGTTTTCTTGCCTGGGCGAATGGGTGGTCGTGGCACCTTCAGgcccaggc                                                                                                                                       <  6:167704‑M2/139‑9 (MQ=255)                 ttGTTTTCACGCCGAGGGGTAATGCCCTACCAGGAGTGAAGGGTTGGCCACTCGCTCAGAAGCCAGGCATCGCAAACCGATGCCTGGCCTGTTTTCTTGCCTGGGCGAATGGGTGGTCGTGGCACCTTCAGgcccaggc                                                                                                                                       >  5:167704‑M2/1‑131 (MQ=255)                 ttGTTTTCACGCCGAGGGGTAATGCCCTACCAGGAGTGAAGGGTTGGCCACTCGCTCAGAAGCCAGGCATCGCAAACCGATGCCTGGCCTGTTTTCTTGCCTGGGCGAATGGGTGGTCGTGGCACCTTCAGGCCCAGGCAAGTCAACGc                                                                                                                             >  7:7727/1‑149 (MQ=255)                           gCCGAGGGGTAATGCCCTACCAGGAGTGAAGGGTTGGCCACTAGCTCAGAAGCCCGGCATCGCAAACCGATGCCTGGCCTGTTTTCTTGCCTGGGCGAATGGGTGGTCGTGGCACCTTCAGGCCCAGGCAAGTCAAAGCTGGACGc                                                                                                                      >  5:225214/1‑146 (MQ=255)                                 gggTAATGCCCTACCAGGAGTGAAGGGTTGGCCACTCGCTCAGAAGCCAGGCATCGCAAACCGATGCCTGGCCTGTTTTCTTGCCTGGGCGAATGGGTGGTCGTGGCACCTTCAGGCCCAGGCAAGTCAACGCTGGACGCTAGAGCTg                                                                                                              >  7:219508/1‑148 (MQ=255)                                    tAATGCCCTACCAGGAGTGAAGGGTTGGCCACTCGCTCAGAAGCCAGGCATCGCAAACCGATGCCTGGCCTGTTTTCTTGCCTGGGCGAATGGGTGGTCGTGGCACCTTCAGGCCCAGGCAAGTCAACGCTGGACGCTAGAGCTGAAgg                                                                                                          <  8:219508/149‑1 (MQ=255)                                       tGCCCTACCAGGAGTGAAGGGTTGGCCACTCGCTCAGAAGCCAGGCATCGCAAACCGATGCCTGGCCTGTTTTCTTGCCTGGGCGAATGGGTGGTCGTGGCACCTTCAGGCCCAGGCAAGTCAACGCTGGACGCTAGAGCTGAAGGTaa                                                                                                       <  3:104823/149‑1 (MQ=255)                                                     tGAAGGGTTGGCCACTCGCTCAGAAGCCAGGCATCGCAAACCGATGCCTGGCCTGTTTTCTTGCCTGGGCGAATGGGTGGTCGTGGCACCTTCAGGCCCAGGCAAGTCAACGCTGGACGCTAGAGCTGAAGGTAATCCGCCAGGTCTGc                                                                                         >  3:149079/1‑149 (MQ=255)                                                       aaGGGTTGGCCACTCGCTCAGAAGCCAGGCATCGCAAACCGATGCCTGGCCTGTTTTCTTGCCTGGGCGAATGGGTGGTCGTGGCACCTTCAGGCCCAGGCAAGTCAACGCTGGACGCTAGAGCTGAAGGTAATCCGCCAGGTCTGCg                                                                                        >  2:125421/1‑148 (MQ=255)                                                               gCCACTCGCTCAGAAGCCAGGCATCGCAAACCGATGCCTGGCCTGTTTTCTTGCCTGGGCGAATGGGTGGTCGTGGCACCTTCAGGCCCAGGCAAGTCAACGCTGGACGCTAGAGCTGAAGGTAATCCGCCAGGTCTGc                                                                                         >  4:178595/1‑139 (MQ=255)                                                               gCCACTCGCTCAGAAGCCAGGCATCGCAAACCGATGCCTGGCCTGTTTTCTTGCCTGGGCGAATGGGTGGTCGTGGCACCTTCAGGCCCAGGCAAGTCAACGCTGGACGCTAGAGCTGAAGGTAATCCGCCAGGTCTGc                                                                                         <  3:178595/139‑1 (MQ=255)                                                               gCCACTCGCTCAGAAGCCAGGCATCGCAAACCGATGCCTGGCCTGTTTTCTTGCCTGGGCGAATGGGTGGTCGTGGCACCTTCAGGCCCAGGCAAGTCAACGCTGGACGCTAGAGCTGAAGGTAATCCGCCAGGTCTGCGTAGTTATGt                                                                               <  5:258929/149‑1 (MQ=255)                                                                 cACTCGCTCAGAAGCCAGGCATCGCAAACCGATGCCTGGCCTGTTTTCTTGCCTGGGCGAAAGGGTGGTCGTGGCACCTTCAGGCCCAGGCAAGTCAACGCAGGACGCTAGAGCTGAAGGGAATCCGCCAGGGCTGCCTAGTTAAGTTg                                                                             >  7:268062/1‑149 (MQ=255)                                                                      gCTCATAAGCCAGGCATCGCAAACCGATGCCTGGCCTGTTTTCTTGCCTGGGCGAATGGGTGGTCGTGGCACCTTCAGGCCCAGGAAAGTCAACGCTGGACGCTAGAGCTGAAGGTAATCCGCCAGGTCTGCGTAGTTATGTTGCCaaa                                                                        <  6:199293/149‑1 (MQ=255)                                                                       cTCAGAAGCCAGGCATCGCAAACCGATGCCTGGCCTGTTTTCTTGCCTGGGCGAATGGGTGGTCGTGGCACCTTCAGGCCCAGGCAAGTCAACGCTGGACGCTAGAGCTGAAGGTAATCCGCCAGGTCTGCGTAGTTATGTTGCCAAAg                                                                       >  7:237827/1‑149 (MQ=255)                                                                            aaGCCAGGCATCGCAAACCGATGCCTGGCCTGTTTTCTTGCCTGGGCGAATGGGTGGTCGTGGCACCTTCAGGCCCAGGCAAGTCAACGCTGGACGCTAGAGCTGAAGGTAATCCGCCAGGTCTGCGTAGTTATGTTGCCAAAGGCCAg                                                                  >  6:246575/1‑149 (MQ=255)                                                                                   gCATCGCAAACCGATGCCTGGCCTGTTTTCTTGCCTGGGCGAATGGGTGGTCGTGGCACCTTCAGGCCCAGGCAAGTCAACGCTGGACGCTAGAGCTGAAGGTAATCCGCCAGGTCTGCGTAGTTATGTTGCCAAAGGCCAGGGCTGc                                                            >  4:163978/1‑148 (MQ=255)                                                                                               gATGCCTGGCCTGTTTTCTTGCCTGGGCGAATGGGTGGTCGTGGCACCTTCAGGCCCAGGCAAGTCAACGCTGGACGCTAGAGCTGAAGGTAATCCGCCAGGTCTGCGTAGTTATGTTGCCAAAGGCCAGGGCTGCCATTGGGGTATTg                                               >  5:271018/1‑149 (MQ=255)                                                                                                     tggcctgTTTTCTTGCCTGGGCGAATGGGTGGTCGTGGCACCTTCAGGCCCAGGCAAGTCAACGCTGGACGCTAGAGCTGAAGGTAATCCGCCAGGTCTGCGTAGTTATGTTGCCAAAGGCCAGGGCTGCCATTGGGGTATTGGGAGCg                                         >  8:13862/1‑149 (MQ=255)                                                                                                     tggcctgTTTTCTTGACTGGGCGAATGGGTGGTCGTGGCACCTTCAGGCCCAGGCAAGTCAACGCTGGACGCTAGAGCTGAAGGTAATCCGCCAGGTCTGCGTAGTTATGTTGCCAAAGGCCAGGGCTGCCATTGGGGTATTGGGAGc                                          <  6:225214/148‑1 (MQ=255)                                                                                                       gcctgTTTTCTTGCCTGGGCGAATGGGTGGTCGTGGCACCTTCAGGCCCAGGCAAGTCAACGCTGGACGCTAGAGCTGAAGGTAATCCGCCAGGTCTGCGTAGTTATGTTGCCAAAGGCCAGGGCTGCCATTGGGGTATTGGGAGCg                                         <  4:149079/147‑1 (MQ=255)                                                                                                           gTTTTCTTGCCTGGGCGAATGGGTGGTCGTGGCACCTTCAGGCCCAGGCAAGTCAACGCTGGACGCTAGAGCTGAAGGTAATCCGCCAGGTCTGCGTAGTTATGTTGCCAAAGGCCAGGGCTGCCATTGGGGTATTGGGAGCGGAAAcc                                   >  4:40133/1‑149 (MQ=255)                                                                                                              ttCTTGCCTGGTCGATTGGGTGGTCGTGGCACCTTCAGGCCCAGGCAAGTCAACGCTGGACGCTAGAGCTGAAGGTAATCCGCCAGGTCTGCTTAGTTATGTTGCCAAAGGCCAGGGCTGCCATTGGGGTATTGGGAGCGGAAACCGa                                 <  8:268062/148‑1 (MQ=255)                                                                                                              ttCTTGCCTGGGCGAATGGGTGGTCGTGGCACCTTCAGGCCCAGGCAAGTCAACGCTGGACGCTAGAGCTGAAGGTAATCCGCCAGGTCTGCGTAGTTATGTTGCCAAAGGCCAGGGCTGCCATTGGGGTATTGGGAGCGGAAACCGa                                 <  5:246575/148‑1 (MQ=255)                                                                                                              ttCTTGCCTGGGCGAATGGGTGGTCGTGGCACCTTCAGGCCCAGGCAAGTCAACGCTGGACGCTAGAGCTGAAGGTAATCCGCCAGGTCTGCGTAGTTATGTTGCCAAAGGCCAGGGCTGCCATTGGGGTATTGGGAGCGGAAACCGa                                 <  6:41934/148‑1 (MQ=255)                                                                                                              ttCTTGCCTGGGCGAATGGGTGGTCGTGGCACCTTCAGGCCCAGGCAAGTCAACGCTGGACGCTAGAGCTGAAGGTAATCCGCCAGGTCTGCGTAGTTATGTTGCCAAAGGCCAGGGCTGCCATTGGGGTATTGGGAGCGGAAACCGAg                                >  4:225703/1‑149 (MQ=255)                                                                                                               tCTTGCCTGGGCGAATGGGTGGTCGTGGCACCTTCAGgcccaggcaagaaaacaggccaggcatcggtttgcgatgcctggcttctgagcgagtggccaacccttcactcctggtagggcattacccctcggcgtgaaaacaata                                   >  5:312660‑M2/1‑37 (MQ=255)                                                                                                               tCTTGCCTGGGCGAATGGGTGGTCGTGGCACCTTCAGgcccaggcaagaaaacaggccaggcatcggtttgcgatgcctggcttctgagcgagtggccaacccttcactcctggtagggcattacccctcggcgtgaaaacaata                                   <  6:312660‑M2/145‑109 (MQ=255)                                                                                                                     cTGGGCGAATGGGTGGTCGTGGCACCTTCAGgcccaggcaagaaaacaggccaggcatcggtttgcgatgcctggcttctgagcgagtggccaacccttcactcctggtagggcattacccctcggcgtgaaaacaatacaggtacacc                         <  7:56726‑M2/149‑119 (MQ=255)                                                                                                                        ggCTAATGGGGGGTCGTGGCACCTTCAGGCCCAGGAAAGTCAACGCTGGACGCTAGAGCTGAAGGTAATCCGCCAGGTCTGCGTAGTTATGTTGCCAAAGGCCAGGGCTGCCATTGGGGTATTGGGAGCGGAAACCGAGGAtcttct                        <  2:136888/147‑1 (MQ=255)                                                                                                                           gAATGGGTGGTCGTGGCACCTTCAGGCCCAGGCAAGTCAACGCTGGACGCTAGAGCTGAAGGTAATCCGCCAGGTCTGCGTAGTTATGTTGCCAAAGGCCAGGGCTGCCATTGGGGTATTGGGAGCGGAAAcc                                   >  5:293444/1‑133 (MQ=255)                                                                                                                           gAATGGGTGGTCGTGGCACCTTCAGGCCCAGGCAAGTCAACGCTGGACGCTAGAGCTGAAGGTAATCCGCCAGGTCTGCGTAGTTATGTTGCCAAAGGCCAGGGCTGCCATTGGGGTATTGGGAGCGGAAAcc                                   <  6:293444/133‑1 (MQ=255)                                                                                                                                ggtggtCGTGGCACCTTCAGGCCCAGGCAAGTCAACGCTGGACGCTAGAGCTGAAGGTAATCCGCCAGGTCTGCGTAGTTATGTTGCCAAAGGCCAGGGCTGCCATTGGGGTATTGGGAGCGGAAACCGAGGATCTTCTGTACCcgcg               <  3:225703/148‑1 (MQ=255)                                                                                                                                    gtCGTGGCACCTTCAGGCCCAGGCAAGTCAACGCTGGACGCTAGAGCTGAAGGTAATCCGCCAGGTCTGCGTAGTTATGTTGCCAAAGGCCAGGGCTGCCATTGGGGTATTGGGAGCGGAAACCGAGGATCTTCTGTACCCGCGgaga           <  1:125421/148‑1 (MQ=255)                                                                                                                                       gTGGCACCTTCAGGCCCAGGCAAGTCAACGCTGGACTCTAGAGCTGAAGGTAATCCGCCAGGTCTGCGTAGTTATGTTGCCAAAGGCCAGGGCTGCCATTGGGGTATTGGGAGCGGAAACCGAGGATCTTCTGTACCCGCGGAGAAAGc       <  8:237827/149‑1 (MQ=255)                                                                                                                                          gCAACTTCAGGCCCAGGCAAGTCAACGGTGGACGGTAGAGCTGAAGGTTATCCGCCAGGTCTGCGTAGTTATGTTGCCAAAGGCCAGTGCTGCCATTGGGGTATTGGGAGCGGAAACCGAGGATCTTCTGTACCCGCGGAGAAAGCGTg    <  8:7727/149‑1 (MQ=255)                                                                                                                                            aCCTTCAGGCCCAGGCAAGTCAACGCTGGACGCTAGAGCTGAAGGTAATCCGCCAGGTCTGCGTAGTTATGTTGCCAAAGGCCAGGGCTGCCATTGGGGTATTGGGAGCGGAAACCGAGGATCTTCTGTACCCGCGGAGAAAGCGTgcg  <  3:163978/149‑1 (MQ=255)                                                                                                                                            aCCTTCAGGCCCAGGCAAGTCAACGCTGGACGCTAGAGCTGAAGGTAATCCGCCAGGTCTGCGTAGTTATGTTGCCAAAGGCCAGGGCTGCCATTGGGGTATTGGGAGCGGAAACCGAGGATCTTCTGTACCCGCGGAGAAAGCGTgcg  >  8:235293/1‑149 (MQ=255)                                                                                                                                            aCCTTCAGGCCCAGGCAAGTCAACGCTGGACGCTAGAGCTGAAGGTAATCCGCCAGGTCTGCGTAGTTATGTTGCCAAAGGCCAGGGCTGCCATTGGGGTATTGGGAGCGGAAACCGAGGATCTTCTGTACCCGCGGAGAAAGCGTgcg  >  2:280135/1‑149 (MQ=255)                                                                                                                                                   |                                                                                                                                              CGAAGGTGTACCTGTATTGTTTTCACGCCGAGGGGTAATGCCCTACCAGGAGTGAAGGGTTGGCCACTCGCTCAGAAGCCAGGCATCGCAAACCGATGCCTGGCCTGTTTTCTTGCCTGGGCGAATGGGTGGTCGTGGCACCTTCAGGCCCAGGCAAGTCAACGCTGGACGCTAGAGCTGAAGGTAATCCGCCAGGTCTGCGTAGTTATGTTGCCAAAGGCCAGGGCTGCCATTGGGGTATTGGGAGCGGAAACCGAGGATCTTCTGTACCCGCGGAGAAAGCGTGCG  >  NC_002947/3209685‑3209972

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.