| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_002947 | = 3209806 | 33 (0.630) | 3 (0.060) | 3/244 | NT | 8.5% | intergenic (+67/+50) | PP_2813/PP_2814 | BNR domain‑containing protein/hypothetical protein |
| ? | NC_002947 | = 3209831 | 34 (0.710) | intergenic (+92/+25) | PP_2813/PP_2814 | BNR domain‑containing protein/hypothetical protein | |||||
CGGCGGCGTTGTTCAACGCCGAAGGTGTACCTGTATTGTTTTCACGCCGAGGGGTAATGCCCTACCAGGAGTGAAGGGTTGGCCACTCGCTCAGAAGCCAGGCATCGCAAACCGATGCCTGGCCTGTTTTCTTGCCTGGGCGAATGGGTGGTCGTGGCACCTTCAGGCCCAGGCAAGTCAACGCTGGACGCTAGAGCTGAAGGTAATCCGCCAGGTCTGCGTAGTTATGTTGCCAAAGGCCAGGGCTGCCATTGGGGTATTGGGAGCGGAAACCGAGGATCTTCTGTA > NC_002947/3209666‑3209953 | cggcggCGTTGTTCAACGCCGAAGGTGTACCTGTATTGTTTTCACGCCGAGGGGTAATGCCCTACCAGGAGTGAAGGGTTGGCCACTCGCTCAGAAGCCAGGCATCGCAAACCGATGCCTGGCCTGTTTTCTTGCCTGGGCGAATGggt < 3:254523/149‑1 (MQ=255)cggcggCGTTGTTCAACGCCGAAGGTGTACCTGTATTGTTTTCACGCCGAGGGGTAATGCCCTACCAGGAGTGAAGGGTTGGCCACTCACTCAGAAGCCAGGCATCGCAAACCGATGCCTGGCCTGTTTTCTTGCCTGGGCGAATGggt < 4:168315/149‑1 (MQ=255) ggcggcGTTGTTCAACGCCGAAGGTGTACCTGTATTGTTTTCACGCCGAGGGGTAATGCCCTACCAGGAGTGAAGGGTTGGCCACTCGCTCAGAAGCCAGGCATCGCAAACCGATGCCTGGCCTGTTTTCTTGCCTGGGCGAATgg > 8:85220/1‑146 (MQ=255) ggcggcGTTGTTCAACGCCGAAGGTGTACCTGTATTGTTTTCACGCCGAGGGGTAATGCCCTACCAGGAGTGAAGGGTTGGCCACTCGCTCAGAAGCCAGGCATCGCAAACCGATGCCTGGCCTGTTTTCTTGCCTGGGCGAATgg < 7:85220/146‑1 (MQ=255) cAACGCCGAAGGTGTACCTGTATTGTTTTCACGCCGAGGGGTAATGCCCTACCAGGAGTGAAGGGTTGGCCACTCGCTCAGAAGCCAGGCATCGCAAACCGATGCCTGGCCTGTTTTCTTGCCTGGGCGAATGGGTGGTCGTGGCACCt > 3:80282/1‑149 (MQ=255) cGAAGGTGTACCTGTATTGTTTTCACGCCGAGGGGTAATGCCCTACCAGGAGTGAAGGGTTGGCCACTCGCTCAGAAGCCAGGCATCGCAAACCGATGCCTGGCCTGTTTTCTTGCCTGGGCGAATGGGTGGTCGTGGCACCTTCAGgc < 1:136888‑M2/149‑3 (MQ=255) gAAGGTGTACCTGTATTGTTTTCACGCCGAGGGGTAATGCCCTACCAGGAGTGAAGGGTTGGCCACTCGCTCAGAAGCCAGGCATCGCAAACCGATGCCTGGCCTGTTTTCTTGCCTGGGCGAATGGGTGGTCGTGGCACCTTCAGgcc < 6:258929‑M2/149‑4 (MQ=255) aaGGTGTACCTGTATTGTTTTCACGCCGAGGGGTAATGCCCTACCAGGAGTGAAGGGTTGGCCACTCGCTCAGAAGCCAGGCATCGCAAACCGATGCCTGGCCTGTTTTCTTGCCTGGGCGAATGGGTGGTCGTGGCACCTTCAGgccc > 5:172378‑M2/1‑145 (MQ=255) ggTGTACCTGTATTGTTTTCACGCCGAGGGGTAATGCCCTACCAGGAGTGAAGGGTTGGCCACTCGCTCAGAAGCCAGGCATCGCAAACCGATGCCTGGCCTGTTTTCTTGCCTGGGCctgaaggtgccacgaccacccattcgcccag < 7:56726‑M1/149‑32 (MQ=255) aCCTGTATTGTTTTCACGCCGAGGGGTAATGCCCTACCAGGAGTGAAGGGTTGGCCACTCGCTCAGAAGCCAGGCATCGCAAACCGATGCCTGGCCTGTTTTCTTGCCTGGGCGAATGGGTGGTCGTGGCACCTTCAGgcccaggcaa > 8:134620‑M2/1‑138 (MQ=255) cTGTATTGTTTTCACGCCGAGGGGTAATGCCCTACCAGGAGTGAAGGGTTGGCCACTCGCTCAGAAGCCAGGCATCGCAAACCGATGCCTGGCCTGTTTTCTTGCCTGGGCGAATGGGTGGTCGTGGCACCTTCAGGCCCAGGCAAGt > 5:41934/1‑148 (MQ=255) gTATTGTTTTCACGCCGAGGGGTAATGCCCTACCAGGAGTGAAGGGTTGGCCACTCGCTCAGAAGCCAGGCATCGCAAACCGATGCCTGGCCTGTTTTCTTGCCTGGGCGAATGGGTGGTCGTGGCACCTTCAGGCCCAGGCAAGTCa > 5:199293/1‑148 (MQ=255) tATTGTTTTCACGCCGAGGGGTAATGCCCTACCAGGAGTGAAGGGTTGGCCACTCGCTCAGAAGCCAGGCATCGCAAACCGATGCCTGGCCTGTTTTCTTGCCTGGGCctgaaggtgccacgaccacccattcgcccaggcaaga < 6:312660‑M1/145‑38 (MQ=255) tATTGTTTTCACGCCGAGGGGTAATGCCCTACCAGGAGTGAAGGGTTGGCCACTCGCTCAGAAGCCAGGCATCGCAAACCGATGCCTGGCCTGTTTTCTTGCCTGGGCctgaaggtgccacgaccacccattcgcccaggcaaga > 5:312660‑M1/1‑108 (MQ=255) ttGTTTTCACGCCGAGGGGTAATGCCCTACCAGGAGTGAAGGGTTGGCCACTCGCTCAGAAGCCAGGCATCGCAAACCGATGCCTGGCCTGTTTTCTTGCCTGGGCGAATGGGTGGTCGTGGCACCTTCAGgcccaggc < 6:167704‑M2/139‑9 (MQ=255) ttGTTTTCACGCCGAGGGGTAATGCCCTACCAGGAGTGAAGGGTTGGCCACTCGCTCAGAAGCCAGGCATCGCAAACCGATGCCTGGCCTGTTTTCTTGCCTGGGCGAATGGGTGGTCGTGGCACCTTCAGgcccaggc > 5:167704‑M2/1‑131 (MQ=255) ttGTTTTCACGCCGAGGGGTAATGCCCTACCAGGAGTGAAGGGTTGGCCACTCGCTCAGAAGCCAGGCATCGCAAACCGATGCCTGGCCTGTTTTCTTGCCTGGGCGAATGGGTGGTCGTGGCACCTTCAGGCCCAGGCAAGTCAACGc > 7:7727/1‑149 (MQ=255) gCCGAGGGGTAATGCCCTACCAGGAGTGAAGGGTTGGCCACTAGCTCAGAAGCCCGGCATCGCAAACCGATGCCTGGCCTGTTTTCTTGCCTGGGCGAATGGGTGGTCGTGGCACCTTCAGGCCCAGGCAAGTCAAAGCTGGACGc > 5:225214/1‑146 (MQ=255) gggTAATGCCCTACCAGGAGTGAAGGGTTGGCCACTCGCTCAGAAGCCAGGCATCGCAAACCGATGCCTGGCCTGTTTTCTTGCCTGGGCGAATGGGTGGTCGTGGCACCTTCAGGCCCAGGCAAGTCAACGCTGGACGCTAGAGCTg > 7:219508/1‑148 (MQ=255) tAATGCCCTACCAGGAGTGAAGGGTTGGCCACTCGCTCAGAAGCCAGGCATCGCAAACCGATGCCTGGCCTGTTTTCTTGCCTGGGCGAATGGGTGGTCGTGGCACCTTCAGGCCCAGGCAAGTCAACGCTGGACGCTAGAGCTGAAgg < 8:219508/149‑1 (MQ=255) tGCCCTACCAGGAGTGAAGGGTTGGCCACTCGCTCAGAAGCCAGGCATCGCAAACCGATGCCTGGCCTGTTTTCTTGCCTGGGCGAATGGGTGGTCGTGGCACCTTCAGGCCCAGGCAAGTCAACGCTGGACGCTAGAGCTGAAGGTaa < 3:104823/149‑1 (MQ=255) tGAAGGGTTGGCCACTCGCTCAGAAGCCAGGCATCGCAAACCGATGCCTGGCCTGTTTTCTTGCCTGGGCGAATGGGTGGTCGTGGCACCTTCAGGCCCAGGCAAGTCAACGCTGGACGCTAGAGCTGAAGGTAATCCGCCAGGTCTGc > 3:149079/1‑149 (MQ=255) aaGGGTTGGCCACTCGCTCAGAAGCCAGGCATCGCAAACCGATGCCTGGCCTGTTTTCTTGCCTGGGCGAATGGGTGGTCGTGGCACCTTCAGGCCCAGGCAAGTCAACGCTGGACGCTAGAGCTGAAGGTAATCCGCCAGGTCTGCg > 2:125421/1‑148 (MQ=255) gCCACTCGCTCAGAAGCCAGGCATCGCAAACCGATGCCTGGCCTGTTTTCTTGCCTGGGCGAATGGGTGGTCGTGGCACCTTCAGGCCCAGGCAAGTCAACGCTGGACGCTAGAGCTGAAGGTAATCCGCCAGGTCTGc < 3:178595/139‑1 (MQ=255) gCCACTCGCTCAGAAGCCAGGCATCGCAAACCGATGCCTGGCCTGTTTTCTTGCCTGGGCGAATGGGTGGTCGTGGCACCTTCAGGCCCAGGCAAGTCAACGCTGGACGCTAGAGCTGAAGGTAATCCGCCAGGTCTGc > 4:178595/1‑139 (MQ=255) gCCACTCGCTCAGAAGCCAGGCATCGCAAACCGATGCCTGGCCTGTTTTCTTGCCTGGGCGAATGGGTGGTCGTGGCACCTTCAGGCCCAGGCAAGTCAACGCTGGACGCTAGAGCTGAAGGTAATCCGCCAGGTCTGCGTAGTTATGt < 5:258929/149‑1 (MQ=255) cACTCGCTCAGAAGCCAGGCATCGCAAACCGATGCCTGGCCTGTTTTCTTGCCTGGGCGAAAGGGTGGTCGTGGCACCTTCAGGCCCAGGCAAGTCAACGCAGGACGCTAGAGCTGAAGGGAATCCGCCAGGGCTGCCTAGTTAAGTTg > 7:268062/1‑149 (MQ=255) gCTCATAAGCCAGGCATCGCAAACCGATGCCTGGCCTGTTTTCTTGCCTGGGCGAATGGGTGGTCGTGGCACCTTCAGGCCCAGGAAAGTCAACGCTGGACGCTAGAGCTGAAGGTAATCCGCCAGGTCTGCGTAGTTATGTTGCCaaa < 6:199293/149‑1 (MQ=255) cTCAGAAGCCAGGCATCGCAAACCGATGCCTGGCCTGTTTTCTTGCCTGGGCGAATGGGTGGTCGTGGCACCTTCAGGCCCAGGCAAGTCAACGCTGGACGCTAGAGCTGAAGGTAATCCGCCAGGTCTGCGTAGTTATGTTGCCAAAg > 7:237827/1‑149 (MQ=255) aaGCCAGGCATCGCAAACCGATGCCTGGCCTGTTTTCTTGCCTGGGCGAATGGGTGGTCGTGGCACCTTCAGGCCCAGGCAAGTCAACGCTGGACGCTAGAGCTGAAGGTAATCCGCCAGGTCTGCGTAGTTATGTTGCCAAAGGCCAg > 6:246575/1‑149 (MQ=255) gCATCGCAAACCGATGCCTGGCCTGTTTTCTTGCCTGGGCGAATGGGTGGTCGTGGCACCTTCAGGCCCAGGCAAGTCAACGCTGGACGCTAGAGCTGAAGGTAATCCGCCAGGTCTGCGTAGTTATGTTGCCAAAGGCCAGGGCTGc > 4:163978/1‑148 (MQ=255) cAAACCGATGCCTGGCCTGTTTTCTTGCCTGGGCGAATGGGTGGTCGTg > 1:295772/1‑49 (MQ=255) cAAACCGATGCCTGGCCTGTTTTCTTGCCTGGGCGAATGGGTGGTCGTg < 2:295772/49‑1 (MQ=255) gATGCCTGGCCTGTTTTCTTGCCTGGGCGAATGGGTGGTCGTGGCACCTTCAGGCCCAGGCAAGTCAACGCTGGACGCTAGAGCTGAAGGTAATCCGCCAGGTCTGCGTAGTTATGTTGCCAAAGGCCAGGGCTGCCATTGGGGTATTg > 5:271018/1‑149 (MQ=255) tggcctgTTTTCTTGCCTGGGCGAATGGGTGGTCGTGGCACCTTCAGGCCCAGGCAAGTCAACGCTGGACGCTAGAGCTGAAGGTAATCCGCCAGGTCTGCGTAGTTATGTTGCCAAAGGCCAGGGCTGCCATTGGGGTATTGGGAGCg > 8:13862/1‑149 (MQ=255) tggcctgTTTTCTTGACTGGGCGAATGGGTGGTCGTGGCACCTTCAGGCCCAGGCAAGTCAACGCTGGACGCTAGAGCTGAAGGTAATCCGCCAGGTCTGCGTAGTTATGTTGCCAAAGGCCAGGGCTGCCATTGGGGTATTGGGAGc < 6:225214/148‑1 (MQ=255) gcctgTTTTCTTGCCTGGGCGAATGGGTGGTCGTGGCACCTTCAGGCCCAGGCAAGTCAACGCTGGACGCTAGAGCTGAAGGTAATCCGCCAGGTCTGCGTAGTTATGTTGCCAAAGGCCAGGGCTGCCATTGGGGTATTGGGAGCg < 4:149079/147‑1 (MQ=255) gTTTTCTTGCCTGGGCGAATGGGTGGTCGTGGCACCTTCAGGCCCAGGCAAGTCAACGCTGGACGCTAGAGCTGAAGGTAATCCGCCAGGTCTGCGTAGTTATGTTGCCAAAGGCCAGGGCTGCCATTGGGGTATTGGGAGCGGAAAcc > 4:40133/1‑149 (MQ=255) ttCTTGCCTGGTCGATTGGGTGGTCGTGGCACCTTCAGGCCCAGGCAAGTCAACGCTGGACGCTAGAGCTGAAGGTAATCCGCCAGGTCTGCTTAGTTATGTTGCCAAAGGCCAGGGCTGCCATTGGGGTATTGGGAGCGGAAACCGa < 8:268062/148‑1 (MQ=255) ttCTTGCCTGGGCGAATGGGTGGTCGTGGCACCTTCAGGCCCAGGCAAGTCAACGCTGGACGCTAGAGCTGAAGGTAATCCGCCAGGTCTGCGTAGTTATGTTGCCAAAGGCCAGGGCTGCCATTGGGGTATTGGGAGCGGAAACCGa < 6:41934/148‑1 (MQ=255) ttCTTGCCTGGGCGAATGGGTGGTCGTGGCACCTTCAGGCCCAGGCAAGTCAACGCTGGACGCTAGAGCTGAAGGTAATCCGCCAGGTCTGCGTAGTTATGTTGCCAAAGGCCAGGGCTGCCATTGGGGTATTGGGAGCGGAAACCGa < 5:246575/148‑1 (MQ=255) ttCTTGCCTGGGCGAATGGGTGGTCGTGGCACCTTCAGGCCCAGGCAAGTCAACGCTGGACGCTAGAGCTGAAGGTAATCCGCCAGGTCTGCGTAGTTATGTTGCCAAAGGCCAGGGCTGCCATTGGGGTATTGGGAGCGGAAACCGAg > 4:225703/1‑149 (MQ=255) tCTTGCCTGGGCGAATGGGTGGTCGTGGCACCTTCAGgcccaggcaagaaaacaggccaggcatcggtttgcgatgcctggcttctgagcgagtggccaacccttcactcctggtagggcattacccctcggcgtgaaaacaata < 6:312660‑M2/145‑109 (MQ=255) tCTTGCCTGGGCGAATGGGTGGTCGTGGCACCTTCAGgcccaggcaagaaaacaggccaggcatcggtttgcgatgcctggcttctgagcgagtggccaacccttcactcctggtagggcattacccctcggcgtgaaaacaata > 5:312660‑M2/1‑37 (MQ=255) ttGCCTGGGCctgaaggtgccacgaccacccattcgcccaggcaagaaaacaggccaggcatcggtttgcgatgcctggcttctgagcgagtggccaacccttcactcctggtagggcattacccctcggcgtgaaaacaatacaggt > 8:134620‑M1/1‑10 (MQ=255) gCCTGGGCctgaaggtgccacgaccacccattcgcccaggcaagaaaacaggccaggcatcggtttgcgatgcctggcttctgagcgagtggccaacccttcactcctggtagggcattacccctcggcgtgaaaacaa < 6:167704‑M1/139‑132 (MQ=255) gCCTGGGCctgaaggtgccacgaccacccattcgcccaggcaagaaaacaggccaggcatcggtttgcgatgcctggcttctgagcgagtggccaacccttcactcctggtagggcattacccctcggcgtgaaaacaa > 5:167704‑M1/1‑8 (MQ=255) cTGGGCGAATGGGTGGTCGTGGCACCTTCAGgcccaggcaagaaaacaggccaggcatcggtttgcgatgcctggcttctgagcgagtggccaacccttcactcctggtagggcattacccctcggcgtgaaaacaatacaggtacacc < 7:56726‑M2/149‑119 (MQ=255) gggCctgaaggtgccacgaccacccattcgcccaggcaagaaaacaggccaggcatcggtttgcgatgcctggcttctgagcgagtggccaacccttcactcctggtagggcattacccctcggcgtgaaaacaatacaggtacacctt > 5:172378‑M1/1‑4 (MQ=255) ggCctgaaggtgccacgaccacccattcgcccaggcaagaaaacaggccaggcatcggtttgcgatgcctggcttctgagcgagtggccaacccttcactcctggtagggcattacccctcggcgtgaaaacaatacaggtacaccttc < 6:258929‑M1/149‑147 (MQ=255) ggCTAATGGGGGGTCGTGGCACCTTCAGGCCCAGGAAAGTCAACGCTGGACGCTAGAGCTGAAGGTAATCCGCCAGGTCTGCGTAGTTATGTTGCCAAAGGCCAGGGCTGCCATTGGGGTATTGGGAGCGGAAACCGAGGAtcttct < 2:136888/147‑1 (MQ=255) gCctgaaggtgccacgaccacccattcgcccaggcaagaaaacaggccaggcatcggtttgcgatgcctggcttctgagcgagtggccaacccttcactcctggtagggcattacccctcggcgtgaaaacaatacaggtacaccttcg < 1:136888‑M1/149‑148 (MQ=255) | CGGCGGCGTTGTTCAACGCCGAAGGTGTACCTGTATTGTTTTCACGCCGAGGGGTAATGCCCTACCAGGAGTGAAGGGTTGGCCACTCGCTCAGAAGCCAGGCATCGCAAACCGATGCCTGGCCTGTTTTCTTGCCTGGGCGAATGGGTGGTCGTGGCACCTTCAGGCCCAGGCAAGTCAACGCTGGACGCTAGAGCTGAAGGTAATCCGCCAGGTCTGCGTAGTTATGTTGCCAAAGGCCAGGGCTGCCATTGGGGTATTGGGAGCGGAAACCGAGGATCTTCTGTA > NC_002947/3209666‑3209953 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |