| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_002947 | 3364666 = | 58 (1.110) | 4 (0.080) | 4/256 | NT | 6.7% | coding (560/879 nt) | PP_2961 | LysR family transcriptional regulator |
| ? | NC_002947 | 3364702 = | 55 (1.100) | coding (524/879 nt) | PP_2961 | LysR family transcriptional regulator | |||||
GAAAACATCGACCTGGCCATCCGCATTGGTTTGGTGAAGAGCGAGGGGCTGGTGGCCGTGCCCCTGGGCACCAGCACACGGCGAGTCTATGCTGCACCGGCCTATCTCGATCGCCATGGCCAGCCACGCGAGCCCGCCGAACTGGCAGGCCA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_002947/3364817‑3364666‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ggccaTGGCGATCGAGATAGGCCGGTGCAGCATAGACTCGCCGTGTGCTGGTGCCCAGGGGCACGGCCACCAGCCCCTCGCTCTTCACCAAACCAATGCGGATGGCCAGGTCGATGTTTTCCATGAGCAGGTCTTCGTTGTAATCGTTCA > NC_002947/3364702‑3364846 GAAAACATCGACCTGGCCATCCGCATTGGTTTGGTGAAGAGCGAGGGGCTGGTGGCCGTGCCCCTGGGCACCAGCACACGGCGAGTCTATGCTGCACCGGCCTATCTCGATCGCCATGGCCAGCCACGCGAGCCCGCCGAACTGGCAGG > 3:106998/1‑149GAAAACATCGACCTGGCCATCCGCATTGGTTTGGTGAAGAGCGAGGGGCTGGTGGCCGTGCCCCTGGGCACCAGCACACGGCGAGTCTATGCTGCACCGGCCTATCTCGATCGCCATGGCCAGCCACGCGAGCCCGCCGAACTGGCAG < 3:58678/148‑1 GCCATGGCCAGCCACGCGAGCCCGCCGAACTGGCAGGCCATGGCGATCGAGATAGGCCGGTGCAGCATAGACTCGCCGTGTGCTGGTGCCCAGGGGCACGGCCACCAGCCCCTCGCTCTTCACCAAACCAATGCGGATGGCCAGGTCGA > 5:88859/1‑149 CCATGGCCAGCCACGCGAGCCCGCCGAACTGGCAGGCCATGGCGATCGAGATAGGCCGGTGCAGCATAGACTCGCCGTGTGCTGGTGCCCAGGGGCACGGCCACCA < 1:209469/106‑1 CCATGGCCAGCCACGCGAGCCCGCCGAACTGGCAGGCCATGGCGATCGAGATAGGCCGGTGCAGCATAGACTCGCCGTGTGCTGGTGCCCAGGGGCACGGCCACCA > 2:209469/1‑106 CATGGCCAGCCACGCGAGCCCGCCGAACTGGCAGGCCATGGCGATCGAGATAGGCCGGTGCAGCATAGACTCGCCGTGTGCTGGTGCCCAGGGGCACGGCCACCAGCCGCTCGCTCTTCACCAAACCAATGCGGATGGCCAGGTCGATG > 1:245879/1‑149 GCCATGGCGATCGAGATAGGCCGGTGCAGCATAGACTCGCCGTGTGCTGGTGCCCAGGGGCACGGCCACCAGCCCCTCGCTCTTCACCAAACCAATGCGGATGGCCAGGTCGATGTTTTCCATGAGCAGGTCTTCGTTGTAATCGTTCA < 1:111713/149‑1 GCCATGGCGATCGAGATAGGCCGGTGCAGCATAGACTCGCCGTGTGCTGGTGCCCAGGGGCACGGCCACCAGCCCCTCGCTCTTCACCAAACCAATGCGGATGGCCAGGTCGATGTTTTCCATGAGCAGGTCTTCGTTGTAATCGTTCA < 6:308126/149‑1 GAAAACATCGACCTGGCCATCCGCATTGGTTTGGTGAAGAGCGAGGGGCTGGTGGCCGTGCCCCTGGGCACCAGCACACGGCGAGTCTATGCTGCACCGGCCTATCTCGATCGCCATGGCCAGCCACGCGAGCCCGCCGAACTGGCAGGCCA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_002947/3364817‑3364666‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ggccaTGGCGATCGAGATAGGCCGGTGCAGCATAGACTCGCCGTGTGCTGGTGCCCAGGGGCACGGCCACCAGCCCCTCGCTCTTCACCAAACCAATGCGGATGGCCAGGTCGATGTTTTCCATGAGCAGGTCTTCGTTGTAATCGTTCA > NC_002947/3364702‑3364846 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |