New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 3479286	55 (1.060)	4 (0.080)	4/252	NT	7.1%	coding (1933/2496 nt)	PP_3090	OmpA domain‑containing protein
	?	NC_002947	= 3479308	52 (1.050)					coding (1911/2496 nt)	PP_3090	OmpA domain‑containing protein

CTGTCGATGTAGTTGCGCGAACTGGACATCAGGAAGGCGTTGTCGAGGATGCGCGGTACATCTGGCTCACGGATCTGGTCGCTATAGAACGTGATCTGGCGGCTGGCATACAGGTAGTCCTGGTTGCCACCGGCCTCGCTGCCAGCGGCGGCCAT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/3479132‑3479286 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cggccatCGCCCGCCAGACCGGCAAGAGCATGGCCGCCGCTGGCAGCGAGGCCGGTGGCAACCAGGACTACCTGTATGCCAGCCGCCAGATCACGTTCTATAGCGACCAGATCCGTGAGCCAGATGTACCGCGCATCCTCGACAACGCCTTCCT  <  NC_002947/3479308‑3479162                                                                                                                                                                                                                                                                                                                CTGTCGATGTAGTTGCGCGAACTGGACATCAGGAAGGCGTTGTCGAGGATGCGCGGTACATCTGGCTCACGGATCTGGTCGCTATAGAACGTGATCTGGCGGCTGGCATACAGGTAGTCCTGGTTGCCACCGGCCTCGCTGCCAGCGGC                                                                                                                                                           <  5:201495/149‑1  TGTCGATGTAGTTGCGCGAACTGGACATCAGGAAGGCGTTGTCGAGGATGCGCGGTACATCTGGCTCACGGATCTGGTCGCTATAGAACGTGATCTGGCGGCTGGCATACAGGTAGTCCTGGTTGCCACCGGCCTCGCTGCCAGCGGCG                                                                                                                                                          >  2:125476/1‑149  TGTCGATGTAGTTGCGCGAACTGGACATCAGGAAGGCGTTGTCGAGGAAGCGCGGTACATCTGGCTCACGGATCTGGTCGCTATAGAACGTGATCTGGCGGCTGGCATACAGGTAGTCCTGGTTGCCACCGGCCTCGCTGCCAGCGGCG                                                                                                                                                          >  6:191610/1‑149       ATGTAGTTGCGCGAACTGGACATCAGGAAGGCGTTGTCGAGGATGCGCGGTACATCTGGCTCACGGATCTGGTCGCTATAGAACGTGATCTGGCGGCTGGCATACAGGTAGTCCTGGTTGCCACCGGCCTCGCTGCCAGCGGCGGCCAT                                                                                                                                                     >  1:310466/1‑149                       TGGACATCAGGAAGGCGTTGTCGAGGATGCGCGGTACATCTGGCTCACGGATCTGGTCGCTATAGAACGTGATCTGGCGGCTGGCATACAGGTAGTCCTGGTTGCCACCGGCCTCGCTGCCAGCGGCGGCCATCGCCCGCCAGACCGG                                                                                                                                      >  5:108984/1‑148                                             GAGGATGCGCGGTACATCTGGCTCACGGATCTGGTCGCTATAGAACGTGATCTGGCGGCTGGCATACAGGTAGTCCTGGTTGCCACCGGCCTCGCTGCCAGCGGCGGCCATCGCCCGCCAGACCGGCAAGAGCATGGCCGCCGCTGGCA                                                                                                               <  6:108984/149‑1                                              AGGATGCGCGGTACATCTGGCTCACGGATCTGGTCGCTATAGAACGTGATCTGGCGGCTGGCATACAGGTAGTCCTGGTTGCCACCGGCCTCGCTGCCAGCGGCGGCCATCGCCCGCCAGACCGGCAAGAGCATGGCCGC                                                                                                                       >  3:51164/1‑140                                              AGGATGCGCGGTACATCTGGCTCACGGATCTGGTCGCTATAGAACGTGATCTGGCGGCTGGCATACAGGTAGTCCTGGTTGCCACCGGCCTCGCTGCCAGCGGCGGCCATCGCCCGCCAGACCGGCAAGAGCATGGCCGC                                                                                                                       <  4:51164/140‑1                                                                                                                                                     CGGCCATCGCCCGCCAGACCGGCAAGAGCATGGCCGCCGCTGGCAGCGAGGCCGGTGGCAACCAGGACTACCTGTATGCCAGCCGCCAGATCACGTTCTATAGCGACCAG                                              >  5:240146/1‑110                                                                                                                                                     CGGCCATCGCCCGCCAGACCGGCAAGAGCATGGCCGCCGCTGGCAGCGAGGCCGGTGGCAACCAGGACTACCTGTATGCCAGCCGCCAGATCACGTTCTATAGCGACCAG                                              <  6:240146/110‑1                                                                                                                                                       GCCATCGCCCGCCAGACCGGCAAGAGCATGGCCGCCGCTGGCAGCGAGGCCGGTGGCAACCAGGACTACCTGTATGCCAGCCGCCAGATCACGTTCTATAGCGACCAGATCCGTGAGCCAGATGTACCGCGCATCCTCGACAACGCCTT     >  6:312678/1‑149                                                                                                                                                        CCATCGCCCGCCAGACCGGCAAGAGCATGGCCGCCGCTGGCAGCGAGGCCGGTGGCAACCAGGACGACCTGTATGCCAGCCGCCAGATCACGTGCTATAGCGCCCCGATCCGTGAGCCAGAGGTCCCGCGCATCCTCGCCAACGCCTTC    >  3:215506/1‑149                                                                                                                                                          ATCGCCCGCCAGACCGGCAAGAGCATGGCCGCCGCTGGCAGCGAGGCCGGTGGCAACCAGGACTACCTGTATGCCAGCCGCCAGATCACGTTCTATAGCGACCAGATCCGTGAGCCAGATGTACCGCGCATCCTCGACAACGCCTTCCT  >  5:115890/1‑149                                                                                                                                                                                                                                                                                                                CTGTCGATGTAGTTGCGCGAACTGGACATCAGGAAGGCGTTGTCGAGGATGCGCGGTACATCTGGCTCACGGATCTGGTCGCTATAGAACGTGATCTGGCGGCTGGCATACAGGTAGTCCTGGTTGCCACCGGCCTCGCTGCCAGCGGCGGCCAT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/3479132‑3479286 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cggccatCGCCCGCCAGACCGGCAAGAGCATGGCCGCCGCTGGCAGCGAGGCCGGTGGCAACCAGGACTACCTGTATGCCAGCCGCCAGATCACGTTCTATAGCGACCAGATCCGTGAGCCAGATGTACCGCGCATCCTCGACAACGCCTTCCT  <  NC_002947/3479308‑3479162

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.