| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_002947 | = 3599288 | 48 (0.920) | 4 (0.080) | 4/256 | NT | 8.1% | coding (417/1521 nt) | PP_3175 | ferredoxin reductase dioxygenase subunit |
| ? | NC_002947 | = 3599319 | 44 (0.880) | coding (386/1521 nt) | PP_3175 | ferredoxin reductase dioxygenase subunit | |||||
GCTCCAGCTGGCCCTTGCGCAGGGCGTCGGCTTCGAGCAGCGCGGGGACCTCATCGGGCGGCATCTGCCCGGCAATCACGAATTTGCTCAGAGCTGTGCGATCGTAGGCCGGCTGGCGCTCCTGATCGATCCATACCAGCCGCCCAGCG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_002947/3599140‑3599288‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cagcgCCGCCGTCGCCACCCTGCTGGCTCATGGCTTCGCTGGGCGGCTGGTA < NC_002947/3599319‑3599273 GCTCCAGCTGGCCCTTGCGCAGGGCGTCGGCTTCGAGCAGCGCGGGGACCTCATCGGGCGGCATCTGCCCGGCAATCACGAATTTGCTCAGAGCTGTGCGATCGTAGGCCGGCTGGCGCTCCTGATCGATCCATACCAGCCGCCCAGC > 1:52654/1‑148GCTCCAGCTGGCCCTTGCGCAGGGCGTCGGCTTCGAGCAGCGCGGGGACCTCATCGGGCGGCATCTGCCCGGCAATCACGAATTTGCTCAGAGCTGTGCGATCGTAGGCCGGCTGGCGCTCCTGATCGATCCATACCAGCCGCCCAGC > 4:32385/1‑148 TCCAGCTGGCCCTTGCGCAGGGCGTCGGCTTCGAGCAGCGCGGGGACCTCATCGGGCGGCATCTGCCCGGCAATCACGAATTTGCTCAGAGCTGTGCGATCGTAGGCCGGCTGGCGCTCCTGATCGATCCATACCAGCCGCCCAGCG > 7:178468/1‑147 CTTCGAGCAGCGCGGGGACCTCATCGGGCGGCATCTGCCCGGCAATCACGAATTTGCTCAGAGCTGTGCGATCGTAGGCCGGCTGGCGCTCCTGATCGATCCATACCAGCCGCCCA < 5:4961/116‑1 CTTCGAGCAGCGCGGGGACCTCATCGGGCGGCATCTGCCCGGCAATCACGAATTTGCTCAGAGCTGTGCGATCGTAGGCCGGCTGGCGCTCCTGATCGATCCATACCAGCCGCCCA > 6:4961/1‑116 TTCGAGCAGCGCGGGGACCTCATCGGGCGGCATCTGCCCGGCAATCACGAATTTGCTCAGAGCTGTGCGATCGTAGGCCGGCTGGCGCTCCTGATCGATCCATACCAGCCGCCCAGCGCCGCCGTCGCCACCCTGCTGGCTCATGGCTT > 2:96369/1‑149 GAGCAGCGCGGGGACCTCATCGGGCGGCATCTGCCCGGCAATCACGAATTTGCTCAGAGCTGTGCGATCGTAGGCCGGCTGGCGCTCCTGATCGATCCATACCAGCCGCCCAGCGCCGCCGTCGCCACCCTGCTGGCTCATGGCTTCG < 1:96369/148‑1 CTCATCGGGCGGCATCTGCCCGGCAATCACGAATTTGCTCAGAGCTGTGCGATCGTAGGCCGGCTGGCGCTCCTGATCGATCCATACCAGCCGCCCAGCGCCGCCGTCGCCACCCTGCTGGCTCATGGCTTCGCTGGGCGGCTGGTA > 7:122444/1‑147 CTCATCGGGCGGCATCTGCCCGGCAATCACGAATTTGCTCAGAGCTGTGCGATCGTAGGCCGGCTGGCGCTCCTGATCGATCCATACCAGCCGCCCAGCGCCGCCGTCGCCACCCTGCTGGCTCATGGCTTCGCTGGGCGGCTGGTA < 8:122444/147‑1 GCTCCAGCTGGCCCTTGCGCAGGGCGTCGGCTTCGAGCAGCGCGGGGACCTCATCGGGCGGCATCTGCCCGGCAATCACGAATTTGCTCAGAGCTGTGCGATCGTAGGCCGGCTGGCGCTCCTGATCGATCCATACCAGCCGCCCAGCG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_002947/3599140‑3599288‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cagcgCCGCCGTCGCCACCCTGCTGGCTCATGGCTTCGCTGGGCGGCTGGTA < NC_002947/3599319‑3599273 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |