New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 3599288	48 (0.920)	4 (0.080)	4/256	NT	8.1%	coding (417/1521 nt)	PP_3175	ferredoxin reductase dioxygenase subunit
	?	NC_002947	= 3599319	44 (0.880)					coding (386/1521 nt)	PP_3175	ferredoxin reductase dioxygenase subunit

TTCGAGCAGCGCGGGGACCTCATCGGGCGGCATCTGCCCGGCAATCACGAATTTGCTCAGAGCTGTGCGATCGTAGGCCGGCTGGCGC‑TCCTGATCGATCCATACCAGCCGCCCAGCGAAGCCATGAGCCAGCAGGGTGGCGACGGCGGCGCTGCCGGCGGCACCGGCGCCGACCACTACGAAGCAGCGGGCATCGCTGTGCCTGGGCGGTTCGGTTGCCGGCAGGGGCTGGTCATCGACCCAGACTTCATCGCCCTTGATCCACGCCTTGTAGCGGCGCAGGTCGGCGAGTGCAGG  >  NC_002947/3599171‑3599467                                                                                                                                                      |                                                                                                                                                     ttCGAGCAGCGCGGGGACCTCATCGGGCGGCATCTGCCCGGCAATCACGAATTTGCTCAGAGCTGTGCGATCGTAGGCCGGCTGGCGC‑TCCTGATCGATCCATACCAGCCGCCCAGCGAAGCCATGAGCCAGCAGGGTGGCGAcggcgg                                                                                                                                                      >  8:267603/1‑149 (MQ=255)           gcgGGGACCTCATCGGGCGGCATCTGCCCGGCAATCACGAATTTGCTCAGAGCTGTGCGATCGTAGGCCGGCTGGCGC‑TCCTGATCGATCCATACCAGCCGCCCAGCGAAGCCATGAGCCAGCAGGGTGGCGACGGCGGCGCTGCcggc                                                                                                                                            <  3:144515/149‑1 (MQ=255)               ggACCTCATCGGGCGGCATCTGCCCGGCAATCACGAATTTGCTCAGAGCTGTGCGATCGTAGGCCGGCTGGCGC‑TCCTGATCGATCCATACCAGCCGCCCAGCGAAGCCATGAGCCAGCAGGGTGGCGACGGCGGCGCTGCCGGCGGCa                                                                                                                                        <  3:32385/149‑1 (MQ=255)                  ccTCATCGGGCGGCATCTGCCCGGCAATCACGAATTTGCTCAGAGCTGTGCGATCGTAGGCCGGCTGGCGC‑TCCTGATCGATCCATACCAGCCGCCCAGCGAAGCCATGAGCCAGCAGGGTGGCGACGGCGGCGCTGCCGGCGGCACCg                                                                                                                                     <  7:172215/149‑1 (MQ=255)                   cTCATCGGGCGGCATCTGCCCGGCAATCACGAATTTGCTCAGAGCTGTGCGATCGTAGGCCGGCTGGCGC‑TCCTGATCGATCCATACCAGCCGCCCAGCGAAGCCATGAGCCAGCAGGGTGGCGACGGCGGCGCTGCCGGCGGCACCgg                                                                                                                                    >  8:16722/1‑149 (MQ=255)                      aTCGGGCGGCATCTGCCCGGCAATCACGAATTTGCTCAGAGCTGTGCGATCGTAGGCCGGCTGGCGC‑TCCTGATCGATCCATACCAGCCGCCCAGCGAAGCCATGAGCCAGCAGGGTGGCGACGGCGGCGCTGCCGGCGGCACCGgcgc                                                                                                                                 >  6:37039/1‑149 (MQ=255)                          ggcggcATCTGCCCGGCAATCACGAATTTGCTCAGAGCTGTGCGATCGTAGGCCGGCTGGCGC‑TCCTGATCGATCCATACCAGCCGCCCAGCGAAGCCATGAGCCAGCAGGGTGGCGACGGCGGCGCTGCCGGCGGCACCGGCGCCGAc                                                                                                                             <  5:61645/149‑1 (MQ=255)                            cggcATCTGCCCGGCAATCACGAATTTGCTCAGAGCTGTGCGATCGTAGGCCGGCTGGCGC‑TCCTGATCGATCCATACCAGCCGCCCAGCGAAGCCATGAGCCAGCAGGGTGGCGACGGCGGCGCTGCCGGCGGCACCGGCGCCGACCa                                                                                                                           <  5:310453/149‑1 (MQ=255)                                aTCTGCCCGGCAATCACGAATTTGCTCAGAGCTGTGCGATCGTAGGCCGGCTGGCGC‑TCCTGATCGATCCATACCAGCCGCCCAGCGAAGCCATGAGCCAGCAGGGTGGCGACGGCGGCGCTGCCGGCGGCACCGGCGCCGACCACTAc                                                                                                                       >  1:21867/1‑149 (MQ=255)                                     cccGGCAATCACGAATTTGCTCAGAGCTGTGCGATCGTAGGCCGGCTGGCGCATCCTGATCGATCCATACCAGCCGCCCAGCGAAGCCATGAGCCAGCAGGGTGGCGACGGCGGCGCTGCCGGCGGCACCGGCGCCGACCACTACGAag                                                                                                                   >  1:243754/1‑149 (MQ=255)                                         gCAATCACGAATTTGCTCAGAGCTGTGCGATCGTAGGCCGGCTGGCGC‑TCCTGATCGATCCATACCAGCCGCCCAGCGAAGCCATGAGCCAGCAGGGTGGCGACGGCGGCGCTGCCGGCGGCACCGGCGCCGACCACTACGAAGCAGCg                                                                                                              >  6:142347/1‑149 (MQ=255)                                           aaTCACGAATTTGCTCAGAGCTGTGCGATCGTAGGCCGGCTGGCGC‑TCCTGATCGATCCATACCAGCCGCCCAGCGAAGCCATGAGCCAGCAGGGTGGCGACGGCGGCGCTGCCGGCGGCACCGGCGCCGACCACTACGAAGCAGCggg                                                                                                            <  7:267603/149‑1 (MQ=255)                                                 gAATTTGCTCAGAGCTGTGCGATCGTAGGCCGGCTGGCGC‑TCCTGATCGATCCATACCAGCCGCCCAGCGAAGCCATGAGCCAGCAGGGTGGCGACGGCGGCGCTGCCGGCGGCACCGGCGCCGACCACTACGAAGCAGCGGGCATCGc                                                                                                      >  5:201053/1‑149 (MQ=255)                                                        cTCAGAGCTGTGCGATCGTAGGCCGGCTGGCGC‑TCCTGATCGATCCATACCAGCCGCCCAGCGAAGCCATGAGCCAGCAGGGTGGCGACGGCGGCGCTGCCGGCGGCACCGGCGCCGACCACTACGAAGCAGCGGGCATCGCTGTGCCt                                                                                               >  1:135826/1‑149 (MQ=255)                                                           agagCTGTGCGATCGTAGGCCGGCTGGCGC‑TCCTGATCGATCCATACCAGCCGCCCAGCGAAGCCATGAGCCAGCAGGGTGGCGACGGCGGCGCTGCCGGCGGCACCGGCGCCGACCACt                                                                                                                         <  6:265775/120‑1 (MQ=255)                                                           agagCTGTGCGATCGTAGGCCGGCTGGCGC‑TCCTGATCGATCCATACCAGCCGCCCAGCGAAGCCATGAGCCAGCAGGGTGGCGACGGCGGCGCTGCCGGCGGCACCGGCGCCGACCACt                                                                                                                         >  5:265775/1‑120 (MQ=255)                                                                        cGTAGGCCGGCTGGCGC‑TCCTGATCGATCCATACCAGCCGCCCAGCGAAGCCATGAGCCAGCAGGGTGGCGACGGCGGCGCTGCCGGCGGCACCGGCGCCGACCACTACGAAGCAGCGGGCATCGCTGTGCCTGGGCGGTTCGGTTGcc                                                                               >  7:121787/1‑149 (MQ=255)                                                                        cGTAGGCCGGCTGGCGC‑TCCTGATCGATCCATACCAGCCGCCCAGCGAAGCCATGAGCCAGCAGGGTGGCGACGGCGGCGCTGCCGGCGGCACCGGCGCCGACCACTACGAAGCAGCGGGCATCGCTGTGCCTGGGCGGTTCGGTTGc                                                                                <  2:243754/148‑1 (MQ=255)                                                                             gCCGGCTGGCGC‑TCCTGATCGATCCATACCAGCCGCCCAGCGAAGCCATGAGCCAGCAGGGTGGCGACGGCGGCGCTGCCGGCGGCACCGGCGCCGACCACTACGAAGCAGCGGGCATCGCTGTGCCTGGGCGGTTCGGTTGCCGGCa                                                                           <  4:172354/148‑1 (MQ=255)                                                                                ggCTGGCGC‑TCCTGATCGATCCATACCAGCCGCCCAGCGAAGCCATGAGCCAGCAGGGTGGCGACGGCGGCGCTGCCGGCGGCACCGGCGCCGACCACTACGAAGCAGCGGGCATCGCTGTGCCTGGGCGGTTCGGTTGCCGGCAgggg                                                                       <  5:37039/149‑1 (MQ=255)                                                                                  cTGGCGC‑TCCTGATCGATCCATACCAGCCGCCCAGCGAAGCCATGAGCCAGCAGGGTGGCGACGGCGGCGCTGCCGGCGGCACCGGCGCCGACCACTACGAAGCAGCGGGCATCGCTGTGCCTGGGCGGTTCGGTTGCCGGCAGGGGCt                                                                     >  2:319774/1‑149 (MQ=255)                                                                                    ggCGC‑TCCTGATCGATCCATACCAGCCGCCCAGCGAAGCCATGAGCCAGCCGGGTGGCGACGGCGGCGCTGCCGGCGGCACCGGCGCCGACCACTACGAAGCAGCGGGCATCGCTGTGCCTGGGCGGTTCGGTTGCCGGCAGGGGCTgg                                                                   <  3:127610/149‑1 (MQ=255)                                                                                     gcgc‑TCCTGATCGATCCATACCAGCCGCCCAGCGAAGCCATGAGCCAGCAGGGTGGCGACGGCGGCGCTGCCGGCGGCACCGGCGCCGACCACTACGAAGCAGCGGGCATCGCTGTGCCTGGGCGGTTCGGTTGCCGGCAGGGGCTgg                                                                   <  1:319774/148‑1 (MQ=255)                                                                                     gcgc‑TCCTGATCGATCCATACCAGCCGCCCAGCGAAGCCATGAGCCAGCAGGGTGGCGACGGCGGCGCTGCCGGCGGCACCGGCGCCGACCACTACGAAGCAGCGGGCATCGCTGTGCCTGGGCGGTTCGGTTGCCGGCAGGGGCTg                                                                    <  6:201053/147‑1 (MQ=255)                                                                                     gcgc‑TCCTGATCGATCCATACCAGCCGCCCAGCGAAGCCATGAGCCAGCAGGGTGGCGACGGCGGCGCTGCCGGCGGCACCGGCGCCGACCACTACGAAGCAGCGGGCATCGCTGTGCCTGGGCGGTTCGGTTGCCGGCAGGGGCTGGt                                                                  >  7:233558/1‑149 (MQ=255)                                                                                       gc‑TCCTGATCGATCCATACCAGCCGCCCAGCGAAGCCATGAGCCAGCAGGGTGGCGACGGCGGCGCTGCCGGCGGCACCGGCGCCGACCACTACGAAGCAGCGGGCATCGCTGTGCCTGGGCGGTTCGGTTGCCGGCAGGGGCTGGTCa                                                                >  5:284625/1‑149 (MQ=255)                                                                                       gc‑TCCTGATCGATCCATACCAGCCGCCCAGCGAAGCCATGAGCCAGCAGGGTGGCGACGGCGGCGCTGCCGGCGGCACCGGCGCCGACCACTACGAAGCAGCGGGCATCGCTGTGCCTGGGCGGTTCGGTTGCCGGCAGGGGCTGGTCa                                                                <  5:73435/149‑1 (MQ=255)                                                                                            cTGATCGATCCATACCAGCCGCCCAGCGAAGCCATGAGCCAGCAGGGTGGCGACGGCGGCGCTGCCGGCGGCACCGGCGCCGACCACTACGAAGCAGCGGGCATCGCTGTGCCTGGGCGGTTCGGTTGCCGGCAGGGGCTGGTCATCGa                                                            >  7:190995/1‑149 (MQ=255)                                                                                            cTGATCGATCCATACCAGCCGCCCAGCGAAGCCATGAGCCAGCAGGGTGGCGACGGCGGCGCTGCCGGCGGCACCGGCGCCGACCACTACGAAGCAGCGGGCATCGCTGTGCCTGGGCGGTTCGGTTGCCGGCAGGGGCTGGTCATCGa                                                            >  8:243019/1‑149 (MQ=255)                                                                                            cTGATCGATCCATACCAGCCGCCCAGCGAAGCCATGAGCCAGCAGGGTGGCGACGGCGCCGGTGCCGCCGGCAGCGccg                                                                                                                                  >  5:184600/1‑79 (MQ=37)                                                                                            cTGATCGATCCATACCAGCCGCCCAGCGAAGCCATGAGCCAGCAGGGTGGCGACGGCGCCGGTGCCGCCGGCAGCGccg                                                                                                                                  <  6:184600/79‑1 (MQ=37)                                                                                             tGATCGATCCATACCAGCCGCCCAGCGAAGCCATGAGCCAGCAGGGTGGCGACGGCGGCGCTGCCGGCGGCACCGGCGCCGACCGCTACGAAGCAGCGGGCATCGCTGTGCCTGGGCGGTTCGGTTGCCGGCAgg                                                                         <  8:202778/135‑1 (MQ=255)                                                                                             tGATCGATCCATACCAGCCGCCCAGCGAAGCCATGAGCCAGCAGGGTGGCGACGGCGGCGCTGCCGGCGGCACCGGCGCCGACCGCTACGAAGCAGCGGGCATCGCTGTGCCTGGGCGGTTCGGTTGCCGGCAgg                                                                         >  7:202778/1‑135 (MQ=255)                                                                                               atcgatcCATACCAGCCGCCCAGCGAAGCCATGAGCCAGCAGGGTGGCGACGGCGGCGCTGCCGGCGGCACCGGCGCCGACCACTACGAAGCAGCGGGCATCGCTGTGCCTGGGCGGTTCGGTTGCCGGCAGGGGCTGGTCATCGAccc                                                         >  3:23027/1‑149 (MQ=255)                                                                                                   atcCATACCAGCCGCCCAGCGAAGCCATGAGCCAGCAGGGTGGCGACGGCGGCGCTGCCGGCGGCACCGGCGCCGACCACTACGAAGCAGCGGGCATCGCTGTGCCTGGGCGGTTCGGTTGCCGGCAGGGGCTGGTCATCGACCCAGAc                                                     <  8:190995/149‑1 (MQ=255)                                                                                                      cATACCAGCCGCCCAGCGAAGCCATGAGCCAGCAGGGTGGCGACGGCGGCGCTGCAGGCGGCACCGGCGCCGACCACTACGAAGCAGCGGGCATCGCTGTGCCTGGGCGGTTCGGTTGCCGGCAGGGGCTGGTCATCGACCCAGACtt                                                   >  1:87827/1‑148 (MQ=255)                                                                                                        tACCAGCCGCCCAGCGAAGCCATGAGCCAGCAGGGTGGCGACGGCGGcgctgggcggctggtatggatcgatcaggagcgccagccggcctacgatcgcacagctctgagcaaattcgtgattgccgggcagatgccgcccgatgag                                                  >  7:122444‑M2/1‑47 (MQ=255)                                                                                                        tACCAGCCGCCCAGCGAAGCCATGAGCCAGCAGGGTGGCGACGGCGGcgctgggcggctggtatggatcgatcaggagcgccagccggcctacgatcgcacagctctgagcaaattcgtgattgccgggcagatgccgcccgatgag                                                  <  8:122444‑M2/147‑101 (MQ=255)                                                                                                          ccAGCCGCCCAGCGAAGCCATGAGCCAGCAGGGTGGCGACGGCGGCGCTGCCGGCGGCACCGGCGACGACCACTACGAAGCAGCGGGCATCGCTGTGCCTGGGCGGTTCGGTTGCCGGCAGGGGCTGGTCATCGACCCAGACTTCATCg                                              >  4:18211/1‑149 (MQ=255)                                                                                                              ccgccCAGCGAAGCCATGAGCCAGCAGGGTGGCGACGGCGGCGCTGCCGGCGGCACCGGCGCCGACCACTACGAAGCAGCGGGCATCGCTGTGCCTGGGCGGTTCGGTTGCCGGCAGGGGCTGGTCATCGACCCAGACTTCATCGCCCt                                          <  6:126908/149‑1 (MQ=255)                                                                                                               cgccCAGCGAAGCCTTGATCCATCAGGGTGGCTACGTCGGCTCTGCCGGCGGCAGCGGGTCCGACCACTAGTAAGCAGCGGGCATCGCTGTGCCTGTGCGGTTCGGTTGCCGGCAGGGGCTGGTCATCGACCCAGACTTCATCGCCCt                                          <  3:219352/148‑1 (MQ=255)                                                                                                                 cccAGCGAAGCCATGAGCCAGCAGGGTGGCGACGGCGGCGCTGCCGGCGGCACCGGCGCCGACCACTACGAAGCAGCGGGCATCGCTGTGCCTGGGCGGTTCGGTTGCCGGCAGGGGCTGGTCATCGACCCAGACTTCATCGCCCTTGa                                       <  7:243019/149‑1 (MQ=255)                                                                                                                      cGAAGCCATGAGCCAGCAGGGTGGCGACGGCGGcgctgggcggctggtatggatcgatcaggagcgccagccggcctacgatcgcacagctctgagcaaattcgtgattgccgggcagatgccgcccgatgaggtccccgcgctgctc                                   <  1:96369‑M2/148‑116 (MQ=255)                                                                                                                        aaGCCATGAGCCAGCAGGGTGGCGACGGCGGcgctgggcggctggtatggatcgatcaggagcgccagccggcctacgatcgcacagctctgagcaaattcgtgattgccgggcagatgccgcccgatgaggtccccgcgctgctcgaa                                >  2:96369‑M2/1‑31 (MQ=255)                                                                                                                        aaGCCATGAGCCAGCAGGGTGGCGACGGCGGCGCTGCCGGCGGCACCGGCGCCGACCACTACGAAGCAGCGGGCATCGCTGTGCCTGGGCGGTTCGGTTGCCGGCAGGGGCTGGTCATCGACCCAGACTTCATCGCCCTTGATCCACGc                                >  8:188071/1‑149 (MQ=255)                                                                                                                        aaGCCATGAGCCAGCAGGGTGGCGACGGCGGCGCTGCCGGCGGCACCGGCGCCGACCACTACGAAGCAGCGGGCATCGCTGTGCCTGGGCGGTTCGGTTGCCGGCAGGGGCTGGTCATCGACCCAGACTTCATCGCCCTTGATCCACGc                                >  2:4853/1‑149 (MQ=255)                                                                                                                                   cagcagGGTGGCGACGGCGGCGCTGCCGGCGGCACCGGCGCCGACCACTACGAAGCAGCGGGCATCGCTGTGCCTGGGCGGTTCGGTTGCCGGCAGGGGCTGGTCATCGACCCAGACTTCATCGCCCTTGATCCACGCCTTGTAgcggc                     <  8:233558/149‑1 (MQ=255)                                                                                                                                        gggTGGCGACGGCGGCGCTGCCGGCGGCACCGGCGCCGACCACTACGAAGCAGCGGGCATCGCTGTGCCTGGGCGGTTCGGTTGCCGGCAGGGGCTGGTCATCGACCCAGACTTCATCGCCCTTGATCCACGCCTTGTAGCGGCGCAgg                <  2:21867/149‑1 (MQ=255)                                                                                                                                               gACGGCGGCGCTGCCGGCGGCACCGGCGCCGACCACTACGAAGCAGCGGGCATCGCTGTGCCTGGGCGGTTCGGTTGCCGGCAGGGGCTGGTCATCGACCCAGACTTCATCGCCCTTGATCCACGCCTTGTAGCGGCGCAGGTCGGCGa         <  4:23027/149‑1 (MQ=255)                                                                                                                                                 cggcggCGCTGCCGGCGGCACCGGCGCCGACCACTACGAAGCAGCGGGCATCGCTGTGCCTGGGCGGTTCGGTTGCCGGCAGGGGCTGGTCATCGACCCAGACTTCATCGCCCTTGATCCACGCCTTGTAGCGGCGCAGGTCGGCGAGt       <  5:142347/149‑1 (MQ=255)                                                                                                                                                     ggcgCTGCCGGCGGCACCGGCGCCGACCACTACGAAGCAGCGGGCATCGCTGTGCCTGGGCGGTTCGGTTGCCGGCAGGGGCTGGTCATCGACCCAGACTTCATCGCCCTTGATCCACGCCTTGTAGCGGCGCAGGTCGGCGa         <  7:213626/143‑1 (MQ=255)                                                                                                                                                     ggcgCTGCCGGCGGCACCGGCGCCGACCACTACGAAGCAGCGGGCATCGCTGTGCCTGGGCGGTTCGGTTGCCGGCAGGGGCTGGTCATCGACCCAGACTTCATCGCCCTTGATCCACGCCTTGTAGCGGCGCAGGTCGGCGa         >  8:213626/1‑143 (MQ=255)                                                                                                                                                      gcgcTGCCGGCGGCACCGGCGCCGACCACTACGAAGCAGCGGGCATCGCTGTGCCTGGGCGGTTCGGTTGCCGGCAGGGGCTGGTCATCGACCCAGACTTCATCGCCCTTGATCCACGCCTTGTAGCGGCGCAGGTCGGCGAGTGCAgg  <  7:16722/149‑1 (MQ=255)                                                                                                                                                      gcgcTGCCGGCGGCACCGGCGCCGACCACTACGAAGCAGCGGGCATCGCTGTGCCTGGGCGGTTCGGTTGCCGGCAGGGGCTGGTCATCGACCCAGACTTCATCGCCCTTGATCCACGCCTTGTAGCGGCGCAGGTCGGCGAGTGCAgg  >  1:92441/1‑149 (MQ=255)                                                                                                                                                      |                                                                                                                                                     TTCGAGCAGCGCGGGGACCTCATCGGGCGGCATCTGCCCGGCAATCACGAATTTGCTCAGAGCTGTGCGATCGTAGGCCGGCTGGCGC‑TCCTGATCGATCCATACCAGCCGCCCAGCGAAGCCATGAGCCAGCAGGGTGGCGACGGCGGCGCTGCCGGCGGCACCGGCGCCGACCACTACGAAGCAGCGGGCATCGCTGTGCCTGGGCGGTTCGGTTGCCGGCAGGGGCTGGTCATCGACCCAGACTTCATCGCCCTTGATCCACGCCTTGTAGCGGCGCAGGTCGGCGAGTGCAGG  >  NC_002947/3599171‑3599467

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.