New junction evidence | |||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|
seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
* | ? | NC_002947 | = 3599288 | 48 (0.920) | 4 (0.080) | 4/256 | NT | 8.1% | coding (417/1521 nt) | PP_3175 | ferredoxin reductase dioxygenase subunit |
? | NC_002947 | = 3599319 | 44 (0.880) | coding (386/1521 nt) | PP_3175 | ferredoxin reductase dioxygenase subunit |
TCCAGCTGGCCCTTGCGCAGGGCGTCGGCTTCGAGCAGCGCGGGGACCTCATCGGGCGGCATCTGCCCGGCAATCACGAATTTGCTCAGAGCTGTGCGATCGTAGGCCGGCTGGCGC‑TCCTGATCGATCCATACCAGCCGCCCAGCGAAGCCATGAGCCAGCAGGGTGGCGACGGCGGCGCTGCCGGCGGCACCGGCGCCGACCACTACGAAGCAGCGGGCATCGCTGTGCCTGGGCGGTTCGGTTGCCGGCAGGGGCTGGTCATCGACCCAGACTTCATCGCCCTTGATCCA > NC_002947/3599142‑3599434 | tCCAGCTGGCCCTTGCGCAGGGCGTCGGCTTCGAGCAGCGCGGGGACCTCATCGGGCGGCATCTGCCCGGCAATCACGAATTTGCTCAGAGCTGTGCGATCGTAGGCCGGCTGGCGC‑TCCTGATCGATCCATACCAGCCGCCCAGCG > 7:178468‑M1/1‑147 (MQ=255) cAGCTGGCCCTTGCGCAGGGCGTCGGCTTCGAGCAGCGCGGGGACCTCATCGGGCGGCATCTGCCCGGCAATCACGAATTTGCTCAGAGCTGTGCGATCGTAGGCCGGCTGGCGC‑TCCTGATCGATCCATACCAGCCGCCCAGCGaa < 8:178468/147‑1 (MQ=255) cAGCTGGCCCTTGCGCAGGGCGTCGGCTTCGAGCAGCGCGGGGACCTCATCGGGCGGCATCTGCCCGGCAATCACGAATTTGCTCAGAGCTGTGCGATCGTAGGCCGGCTGGCGC‑TCCTGATCGATCCATACCAGCCGCCCAGCGAAg < 3:161879/148‑1 (MQ=255) aGCTGGCCCTTGCGCAGGGCGTCGGCTTCGAGCAGCGCGGGGACCTCATCGGGCGGCATCTGCCCGGCAATCACGAATTTGCTCAGAGCTGTGCGATCGTAGGCCGGCTGGCGC‑TCCTGATCGATCCATACCAGCCGCCCAGCGAAGcc < 4:173525/149‑1 (MQ=255) ccTTGCGCAGGGCGTCGGCTTCGAGCAGCGCGGGGACCTCATCGGGCGGCATCTGCCCGGCAATCACGAATTTGCTCAGAGCTGTGCGATCGTAGGCCGGCTGGCGC‑TCCTGATCGATCCATACCAGCCGCCCAGCGAAGCCATGAGc > 6:73435/1‑148 (MQ=255) gcgcAGGGCGTCGGCTTCGAGCAGCGCGGGGACCTCATCGGGCGGCATCTGCCCGGCAATCACGAATTTGCTCAGAGCTGTGCGATCGTAGGCCGGCTGGCGC‑TCCTGATCGATCCATACCAGCCGCCCAGCGAAGCCATGAGCcag < 6:86418/147‑1 (MQ=255) aGGGCGTCGGCTTTGAGCAGCGCGGGGACCTCATCGGGCGGCATCTGCCCGGCAATCACGAATTTGCTCAGAGCTGTGCGATCGTAGGCCGGCTGGCGC‑TCCTGATCGATCCATACCAGCCGCCCAGCGAAGCCATGAGCCAGCAGGGt > 6:61645/1‑149 (MQ=255) aGGGCGTCGGCTTCGAGCAGCGCGGGGACCTCATCGGGCGGCATCTGCCCGGCAATCACGAATTTGCTCAGAGCTGTGCGATCGTAGGCCGGCTGGCGC‑TCCTGATCGATCCATACCAGTCGCCCAGCGAAGCCATGAGCCAGCAGGGt < 4:154878/149‑1 (MQ=255) gTCGGCTTCGAGCAGCGCGGGGACCTCATCGGGCGGCATCTGCCCGGCAATCACGAATTTGCTCAGAGCTGTGCGATCGTAGGCCGGCTGGCGC‑TCCTGATCGATCCATACCAGCCGCCCAGCGAAGCCATGAGCCAGCAGGGTGGCGa > 3:172354/1‑149 (MQ=255) cTTCGAGCAGCGCGGGGACCTCATCGGGCGGCATCTGCCCGGCAATCACGAATTTGCTCAGAGCTGTGCGATCGTAGGCCGGCTGGCGC‑TCCTGATCGATCCATACCAGCCGCCCAGCGAAGCCATGAGCCAGCAGGGTGGCGAcggcg > 8:172215/1‑149 (MQ=255) ttCGAGCAGCGCGGGGACCTCATCGGGCGGCATCTGCCCGGCAATCACGAATTTGCTCAGAGCTGTGCGATCGTAGGCCGGCTGGCGC‑TCCTGATCGATCCATACCAGCCGCCCAGCGccgccgtcgccaccctgctggctcatggctt > 2:96369‑M1/1‑118 (MQ=255) ttCGAGCAGCGCGGGGACCTCATCGGGCGGCATCTGCCCGGCAATCACGAATTTGCTCAGAGCTGTGCGATCGTAGGCCGGCTGGCGC‑TCCTGATCGATCCATACCAGCCGCCCAGCGAAGCCATGa < 1:301412/127‑1 (MQ=255) ttCGAGCAGCGCGGGGACCTCATCGGGCGGCATCTGCCCGGCAATCACGAATTTGCTCAGAGCTGTGCGATCGTAGGCCGGCTGGCGC‑TCCTGATCGATCCATACCAGCCGCCCAGCGAAGCCATGa > 2:301412/1‑127 (MQ=255) ttCGAGCAGCGCGGGGACCTCATCGGGCGGCATCTGCCCGGCAATCACGAATTTGCTCAGAGCTGTGCGATCGTAGGCCGGCTGGCGC‑TCCTGATCGATCCATACCAGCCGCCCAGCGAAGCCATGAGCCAGCAGGGTGGCGAcggcgg > 8:267603/1‑149 (MQ=255) gAGCAGCGCGGGGACCTCATCGGGCGGCATCTGCCCGGCAATCACGAATTTGCTCAGAGCTGTGCGATCGTAGGCCGGCTGGCGC‑TCCTGATCGATCCATACCAGCCGCCCAGCGccgccgtcgccaccctgctggctcatggcttcg < 1:96369‑M1/148‑34 (MQ=255) gcgGGGACCTCATCGGGCGGCATCTGCCCGGCAATCACGAATTTGCTCAGAGCTGTGCGATCGTAGGCCGGCTGGCGC‑TCCTGATCGATCCATACCAGCCGCCCAGCGAAGCCATGAGCCAGCAGGGTGGCGACGGCGGCGCTGCcggc < 3:144515/149‑1 (MQ=255) ggACCTCATCGGGCGGCATCTGCCCGGCAATCACGAATTTGCTCAGAGCTGTGCGATCGTAGGCCGGCTGGCGC‑TCCTGATCGATCCATACCAGCCGCCCAGCGAAGCCATGAGCCAGCAGGGTGGCGACGGCGGCGCTGCCGGCGGCa < 3:32385/149‑1 (MQ=255) ccTCATCGGGCGGCATCTGCCCGGCAATCACGAATTTGCTCAGAGCTGTGCGATCGTAGGCCGGCTGGCGC‑TCCTGATCGATCCATACCAGCCGCCCAGCGAAGCCATGAGCCAGCAGGGTGGCGACGGCGGCGCTGCCGGCGGCACCg < 7:172215/149‑1 (MQ=255) cTCATCGGGCGGCATCTGCCCGGCAATCACGAATTTGCTCAGAGCTGTGCGATCGTAGGCCGGCTGGCGC‑TCCTGATCGATCCATACCAGCCGCCCAGCGccgccgtcgccaccctgctggctcatggcttcgctgggcggctggta > 7:122444‑M1/1‑100 (MQ=255) cTCATCGGGCGGCATCTGCCCGGCAATCACGAATTTGCTCAGAGCTGTGCGATCGTAGGCCGGCTGGCGC‑TCCTGATCGATCCATACCAGCCGCCCAGCGccgccgtcgccaccctgctggctcatggcttcgctgggcggctggta < 8:122444‑M1/147‑48 (MQ=255) cTCATCGGGCGGCATCTGCCCGGCAATCACGAATTTGCTCAGAGCTGTGCGATCGTAGGCCGGCTGGCGC‑TCCTGATCGATCCATACCAGCCGCCCAGCGAAGCCATGAGCCAGCAGGGTGGCGACGGCGGCGCTGCCGGCGGCACCgg > 8:16722/1‑149 (MQ=255) aTCGGGCGGCATCTGCCCGGCAATCACGAATTTGCTCAGAGCTGTGCGATCGTAGGCCGGCTGGCGC‑TCCTGATCGATCCATACCAGCCGCCCAGCGAAGCCATGAGCCAGCAGGGTGGCGACGGCGGCGCTGCCGGCGGCACCGgcgc > 6:37039/1‑149 (MQ=255) ggcggcATCTGCCCGGCAATCACGAATTTGCTCAGAGCTGTGCGATCGTAGGCCGGCTGGCGC‑TCCTGATCGATCCATACCAGCCGCCCAGCGAAGCCATGAGCCAGCAGGGTGGCGACGGCGGCGCTGCCGGCGGCACCGGCGCCGAc < 5:61645/149‑1 (MQ=255) cggcATCTGCCCGGCAATCACGAATTTGCTCAGAGCTGTGCGATCGTAGGCCGGCTGGCGC‑TCCTGATCGATCCATACCAGCCGCCCAGCGAAGCCATGAGCCAGCAGGGTGGCGACGGCGGCGCTGCCGGCGGCACCGGCGCCGACCa < 5:310453/149‑1 (MQ=255) aTCTGCCCGGCAATCACGAATTTGCTCAGAGCTGTGCGATCGTAGGCCGGCTGGCGC‑TCCTGATCGATCCATACCAGCCGCCCAGCGAAGCCATGAGCCAGCAGGGTGGCGACGGCGGCGCTGCCGGCGGCACCGGCGCCGACCACTAc > 1:21867/1‑149 (MQ=255) cccGGCAATCACGAATTTGCTCAGAGCTGTGCGATCGTAGGCCGGCTGGCGCATCCTGATCGATCCATACCAGCCGCCCAGCGAAGCCATGAGCCAGCAGGGTGGCGACGGCGGCGCTGCCGGCGGCACCGGCGCCGACCACTACGAag > 1:243754/1‑149 (MQ=255) gCAATCACGAATTTGCTCAGAGCTGTGCGATCGTAGGCCGGCTGGCGC‑TCCTGATCGATCCATACCAGCCGCCCAGCGAAGCCATGAGCCAGCAGGGTGGCGACGGCGGCGCTGCCGGCGGCACCGGCGCCGACCACTACGAAGCAGCg > 6:142347/1‑149 (MQ=255) aaTCACGAATTTGCTCAGAGCTGTGCGATCGTAGGCCGGCTGGCGC‑TCCTGATCGATCCATACCAGCCGCCCAGCGAAGCCATGAGCCAGCAGGGTGGCGACGGCGGCGCTGCCGGCGGCACCGGCGCCGACCACTACGAAGCAGCggg < 7:267603/149‑1 (MQ=255) gAATTTGCTCAGAGCTGTGCGATCGTAGGCCGGCTGGCGC‑TCCTGATCGATCCATACCAGCCGCCCAGCGAAGCCATGAGCCAGCAGGGTGGCGACGGCGGCGCTGCCGGCGGCACCGGCGCCGACCACTACGAAGCAGCGGGCATCGc > 5:201053/1‑149 (MQ=255) cTCAGAGCTGTGCGATCGTAGGCCGGCTGGCGC‑TCCTGATCGATCCATACCAGCCGCCCAGCGAAGCCATGAGCCAGCAGGGTGGCGACGGCGGCGCTGCCGGCGGCACCGGCGCCGACCACTACGAAGCAGCGGGCATCGCTGTGCCt > 1:135826/1‑149 (MQ=255) agagCTGTGCGATCGTAGGCCGGCTGGCGC‑TCCTGATCGATCCATACCAGCCGCCCAGCGAAGCCATGAGCCAGCAGGGTGGCGACGGCGGCGCTGCCGGCGGCACCGGCGCCGACCACt > 5:265775/1‑120 (MQ=255) agagCTGTGCGATCGTAGGCCGGCTGGCGC‑TCCTGATCGATCCATACCAGCCGCCCAGCGAAGCCATGAGCCAGCAGGGTGGCGACGGCGGCGCTGCCGGCGGCACCGGCGCCGACCACt < 6:265775/120‑1 (MQ=255) cGTAGGCCGGCTGGCGC‑TCCTGATCGATCCATACCAGCCGCCCAGCGAAGCCATGAGCCAGCAGGGTGGCGACGGCGGCGCTGCCGGCGGCACCGGCGCCGACCACTACGAAGCAGCGGGCATCGCTGTGCCTGGGCGGTTCGGTTGcc > 7:121787/1‑149 (MQ=255) cGTAGGCCGGCTGGCGC‑TCCTGATCGATCCATACCAGCCGCCCAGCGAAGCCATGAGCCAGCAGGGTGGCGACGGCGGCGCTGCCGGCGGCACCGGCGCCGACCACTACGAAGCAGCGGGCATCGCTGTGCCTGGGCGGTTCGGTTGc < 2:243754/148‑1 (MQ=255) gCCGGCTGGCGC‑TCCTGATCGATCCATACCAGCCGCCCAGCGAAGCCATGAGCCAGCAGGGTGGCGACGGCGGCGCTGCCGGCGGCACCGGCGCCGACCACTACGAAGCAGCGGGCATCGCTGTGCCTGGGCGGTTCGGTTGCCGGCa < 4:172354/148‑1 (MQ=255) ggCTGGCGC‑TCCTGATCGATCCATACCAGCCGCCCAGCGAAGCCATGAGCCAGCAGGGTGGCGACGGCGGCGCTGCCGGCGGCACCGGCGCCGACCACTACGAAGCAGCGGGCATCGCTGTGCCTGGGCGGTTCGGTTGCCGGCAgggg < 5:37039/149‑1 (MQ=255) cTGGCGC‑TCCTGATCGATCCATACCAGCCGCCCAGCGAAGCCATGAGCCAGCAGGGTGGCGACGGCGGCGCTGCCGGCGGCACCGGCGCCGACCACTACGAAGCAGCGGGCATCGCTGTGCCTGGGCGGTTCGGTTGCCGGCAGGGGCt > 2:319774/1‑149 (MQ=255) ggCGC‑TCCTGATCGATCCATACCAGCCGCCCAGCGAAGCCATGAGCCAGCCGGGTGGCGACGGCGGCGCTGCCGGCGGCACCGGCGCCGACCACTACGAAGCAGCGGGCATCGCTGTGCCTGGGCGGTTCGGTTGCCGGCAGGGGCTgg < 3:127610/149‑1 (MQ=255) gcgc‑TCCTGATCGATCCATACCAGCCGCCCAGCGAAGCCATGAGCCAGCAGGGTGGCGACGGCGGCGCTGCCGGCGGCACCGGCGCCGACCACTACGAAGCAGCGGGCATCGCTGTGCCTGGGCGGTTCGGTTGCCGGCAGGGGCTgg < 1:319774/148‑1 (MQ=255) gcgc‑TCCTGATCGATCCATACCAGCCGCCCAGCGAAGCCATGAGCCAGCAGGGTGGCGACGGCGGCGCTGCCGGCGGCACCGGCGCCGACCACTACGAAGCAGCGGGCATCGCTGTGCCTGGGCGGTTCGGTTGCCGGCAGGGGCTg < 6:201053/147‑1 (MQ=255) gcgc‑TCCTGATCGATCCATACCAGCCGCCCAGCGAAGCCATGAGCCAGCAGGGTGGCGACGGCGGCGCTGCCGGCGGCACCGGCGCCGACCACTACGAAGCAGCGGGCATCGCTGTGCCTGGGCGGTTCGGTTGCCGGCAGGGGCTGGt > 7:233558/1‑149 (MQ=255) gc‑TCCTGATCGATCCATACCAGCCGCCCAGCGAAGCCATGAGCCAGCAGGGTGGCGACGGCGGCGCTGCCGGCGGCACCGGCGCCGACCACTACGAAGCAGCGGGCATCGCTGTGCCTGGGCGGTTCGGTTGCCGGCAGGGGCTGGTCa < 5:73435/149‑1 (MQ=255) gc‑TCCTGATCGATCCATACCAGCCGCCCAGCGAAGCCATGAGCCAGCAGGGTGGCGACGGCGGCGCTGCCGGCGGCACCGGCGCCGACCACTACGAAGCAGCGGGCATCGCTGTGCCTGGGCGGTTCGGTTGCCGGCAGGGGCTGGTCa > 5:284625/1‑149 (MQ=255) cTGATCGATCCATACCAGCCGCCCAGCGAAGCCATGAGCCAGCAGGGTGGCGACGGCGGCGCTGCCGGCGGCACCGGCGCCGACCACTACGAAGCAGCGGGCATCGCTGTGCCTGGGCGGTTCGGTTGCCGGCAGGGGCTGGTCATCGa > 7:190995/1‑149 (MQ=255) cTGATCGATCCATACCAGCCGCCCAGCGAAGCCATGAGCCAGCAGGGTGGCGACGGCGGCGCTGCCGGCGGCACCGGCGCCGACCACTACGAAGCAGCGGGCATCGCTGTGCCTGGGCGGTTCGGTTGCCGGCAGGGGCTGGTCATCGa > 8:243019/1‑149 (MQ=255) cTGATCGATCCATACCAGCCGCCCAGCGAAGCCATGAGCCAGCAGGGTGGCGACGGCGCCGGTGCCGCCGGCAGCGccg < 6:184600/79‑1 (MQ=37) cTGATCGATCCATACCAGCCGCCCAGCGAAGCCATGAGCCAGCAGGGTGGCGACGGCGCCGGTGCCGCCGGCAGCGccg > 5:184600/1‑79 (MQ=37) tGATCGATCCATACCAGCCGCCCAGCGAAGCCATGAGCCAGCAGGGTGGCGACGGCGGCGCTGCCGGCGGCACCGGCGCCGACCGCTACGAAGCAGCGGGCATCGCTGTGCCTGGGCGGTTCGGTTGCCGGCAgg > 7:202778/1‑135 (MQ=255) tGATCGATCCATACCAGCCGCCCAGCGAAGCCATGAGCCAGCAGGGTGGCGACGGCGGCGCTGCCGGCGGCACCGGCGCCGACCGCTACGAAGCAGCGGGCATCGCTGTGCCTGGGCGGTTCGGTTGCCGGCAgg < 8:202778/135‑1 (MQ=255) atcgatcCATACCAGCCGCCCAGCGAAGCCATGAGCCAGCAGGGTGGCGACGGCGGCGCTGCCGGCGGCACCGGCGCCGACCACTACGAAGCAGCGGGCATCGCTGTGCCTGGGCGGTTCGGTTGCCGGCAGGGGCTGGTCATCGAccc > 3:23027/1‑149 (MQ=255) atcCATACCAGCCGCCCAGCGAAGCCATGAGCCAGCAGGGTGGCGACGGCGGCGCTGCCGGCGGCACCGGCGCCGACCACTACGAAGCAGCGGGCATCGCTGTGCCTGGGCGGTTCGGTTGCCGGCAGGGGCTGGTCATCGACCCAGAc < 8:190995/149‑1 (MQ=255) cATACCAGCCGCCCAGCGAAGCCATGAGCCAGCAGGGTGGCGACGGCGGCGCTGCAGGCGGCACCGGCGCCGACCACTACGAAGCAGCGGGCATCGCTGTGCCTGGGCGGTTCGGTTGCCGGCAGGGGCTGGTCATCGACCCAGACtt > 1:87827/1‑148 (MQ=255) tACCAGCCGCCCAGCGAAGCCATGAGCCAGCAGGGTGGCGACGGCGGcgctgggcggctggtatggatcgatcaggagcgccagccggcctacgatcgcacagctctgagcaaattcgtgattgccgggcagatgccgcccgatgag > 7:122444‑M2/1‑47 (MQ=255) tACCAGCCGCCCAGCGAAGCCATGAGCCAGCAGGGTGGCGACGGCGGcgctgggcggctggtatggatcgatcaggagcgccagccggcctacgatcgcacagctctgagcaaattcgtgattgccgggcagatgccgcccgatgag < 8:122444‑M2/147‑101 (MQ=255) ccAGCCGCCCAGCGAAGCCATGAGCCAGCAGGGTGGCGACGGCGGCGCTGCCGGCGGCACCGGCGACGACCACTACGAAGCAGCGGGCATCGCTGTGCCTGGGCGGTTCGGTTGCCGGCAGGGGCTGGTCATCGACCCAGACTTCATCg > 4:18211/1‑149 (MQ=255) ccgccCAGCGAAGCCATGAGCCAGCAGGGTGGCGACGGCGGCGCTGCCGGCGGCACCGGCGCCGACCACTACGAAGCAGCGGGCATCGCTGTGCCTGGGCGGTTCGGTTGCCGGCAGGGGCTGGTCATCGACCCAGACTTCATCGCCCt < 6:126908/149‑1 (MQ=255) cgccCAGCGAAGCCTTGATCCATCAGGGTGGCTACGTCGGCTCTGCCGGCGGCAGCGGGTCCGACCACTAGTAAGCAGCGGGCATCGCTGTGCCTGTGCGGTTCGGTTGCCGGCAGGGGCTGGTCATCGACCCAGACTTCATCGCCCt < 3:219352/148‑1 (MQ=255) cccAGCGAAGCCATGAGCCAGCAGGGTGGCGACGGCGGCGCTGCCGGCGGCACCGGCGCCGACCACTACGAAGCAGCGGGCATCGCTGTGCCTGGGCGGTTCGGTTGCCGGCAGGGGCTGGTCATCGACCCAGACTTCATCGCCCTTGa < 7:243019/149‑1 (MQ=255) cGAAGCCATGAGCCAGCAGGGTGGCGACGGCGGcgctgggcggctggtatggatcgatcaggagcgccagccggcctacgatcgcacagctctgagcaaattcgtgattgccgggcagatgccgcccgatgaggtccccgcgctgctc < 1:96369‑M2/148‑116 (MQ=255) | TCCAGCTGGCCCTTGCGCAGGGCGTCGGCTTCGAGCAGCGCGGGGACCTCATCGGGCGGCATCTGCCCGGCAATCACGAATTTGCTCAGAGCTGTGCGATCGTAGGCCGGCTGGCGC‑TCCTGATCGATCCATACCAGCCGCCCAGCGAAGCCATGAGCCAGCAGGGTGGCGACGGCGGCGCTGCCGGCGGCACCGGCGCCGACCACTACGAAGCAGCGGGCATCGCTGTGCCTGGGCGGTTCGGTTGCCGGCAGGGGCTGGTCATCGACCCAGACTTCATCGCCCTTGATCCA > NC_002947/3599142‑3599434 |
Alignment Legend |
---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
Reads not counted as support for junction |
read_name Not counted due to insufficient overlap past the breakpoint. |
read_name Not counted due to not crossing MOB target site duplication. |