New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 3637858	48 (0.920)	4 (0.080)	4/252	NT	8.3%	coding (438/588 nt)	PP_3204	hypothetical protein
	?	NC_002947	= 3637894	43 (0.870)					coding (474/588 nt)	PP_3204	hypothetical protein

AGGTCAGTGCCGAAGATGCAGCCGCTGTCTTCGCCGAGATCGGCGAGGCGAGTGCCGGCACGGGCAAAGCCGATTCGAAGCACAAGCTGATGCACCGCACCGAAACCCTGGACTACGGCATCGTTACCGAGGGCGAGGTCTGGCTGGTGCTGGAC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/3637704‑3637858 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gctggacCACGATGTCGCCTCGTTTGAGGTGGACTTCGCCATCGTCCAGCACCAGCC  <  NC_002947/3637894‑3637845                                                                                                                                                                                                               AGGTCAGTGCCGAAGATGCAGCCGCTGTCTTCGCCGAGATCGGCGAGGCGAGTGCCGGCACGGGCAAAGCCGATTCGAAGCACAAGCTGATGCACCGCACCGAAACCCTGGACTACGGCATCGTTACCGAGGGCGAGGTCTGGCTGGTG                                                          <  7:199253/149‑1  GGTCAGTGCCGAAGATGCAGCCGCTGTCTTCGCCGAGATCGGCGAGGCGAGTGCCGGCACGGGCAAAGCCGATTCGAAGCACAAGCTGATGCACCGCACCGAAACCCTGGACTACGGCATCGTTACCGAGGGCGAGGTCTGGCTGGTGC                                                         >  7:286364/1‑149      AGTGCCGAAGATGCAGCCGCTGTCTTCGCCGAGATCGGCGAGGCGAGTGCCGGCACGGGCAAAGCCGATTCGAAGCACAAGCTGATGCACCGCACCGAAACCCTGGACTACGGCATCGTTACCGAGGGCGAGGTCTGGCTGGTGCTGGA                                                     <  7:8786/149‑1                              TTCGCCGAGATCGGCGAGGCGAGTGCCGGCACGGGCAAAGCCGATTCGAAGCACAAGCTGATGCACCGCACCGAAACCCTGGACTACGGCATCGTTACCGAGGGCGAGGTCTGGCTGGTGCTGGACCACGATGTCGCCTCGTTTGAGGT                             >  3:154518/1‑149                                                   AGTGCCGGCACGGGCAAAGCCGATTCGAAGCACAAGCTGATGCACCGCACCGAAACCCTGGACTACGGCATCGTTACCGAGGGCGAGGTCTGGCTGGTGCTGGACCACGATGTCGCCTCGTTTGAGGTGGACTTCGCCATCGTCCAGCA        <  4:154518/149‑1                                                                                  ACAAGCTGATGCACCGCACCGAAACCCTGGACTACGGCATCGTTACCGAGGGCGAGGTCTGGCTGGTGCTGGACCACGATGTCGCCTCGTTTGAGGTGGACTTCGCCATCGTCCAGCACCAGCC  >  1:323872/1‑124                                                                                  ACAAGCTGATGCACCGCACCGAAACCCTGGACTACGGCATCGTTACCGAGGGCGAGGTCTGGCTGGTGCTGGACCACGATGTCGCCTCGTTTGAGGTGGACTTCGCCATCGTCCAGCACCAGCC  <  2:323872/124‑1                                                                                                                                                                                                               AGGTCAGTGCCGAAGATGCAGCCGCTGTCTTCGCCGAGATCGGCGAGGCGAGTGCCGGCACGGGCAAAGCCGATTCGAAGCACAAGCTGATGCACCGCACCGAAACCCTGGACTACGGCATCGTTACCGAGGGCGAGGTCTGGCTGGTGCTGGAC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/3637704‑3637858 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gctggacCACGATGTCGCCTCGTTTGAGGTGGACTTCGCCATCGTCCAGCACCAGCC  <  NC_002947/3637894‑3637845

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.