New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 3637858	48 (0.920)	4 (0.080)	4/252	NT	8.3%	coding (438/588 nt)	PP_3204	hypothetical protein
	?	NC_002947	= 3637894	43 (0.870)					coding (474/588 nt)	PP_3204	hypothetical protein

CCGAAGATGCAGCCGCTGTCTTCGCCGAGATCGGCGAGGCGAGTGCCGGCACGGGCAAAGCCGATTCGAAGCACAAGCTGATGCACCGCACCGAAACCCTGGACTACGGCATCGTTACCGAGGGCGAGGTCTGGCTGGTGCTGGACGATGGCGAAGTCCACCTCAAACGAGGCGACATCGTGGTCCAGCGCGGTACCAACCATGCCTGGAGCAACCGCAGCGAACAGATGGCCCGGATGGTCTTCATCCTGCTGGATGGGCGTTATGCCGAGACACTCAAGGAGCTG  >  NC_002947/3637713‑3637999                                                                                                                                                  |                                                                                                                                              ccGAAGATGCAGCCGCTGTCTTCGCCGAGATCGGCGAGGCGAGTGCCGGCACGGGCAAAGCCGATTCGAAGCACAAGCTGATGCACCGCACCGAAACCCTGGACTACGGCATCGTTACCGAGGGCGAGGTCTGGCTGGTGCTGGACGa                                                                                                                                             <  2:163830/148‑1 (MQ=255)    aaGATGCAGCCGCTGTCTTCGCCGAGATCGGCGAGGCGAGTGCCGGCACGGGCAAAGCCGATTCGAAGCACAAGCTGATGCACCGCACCGAAACCCTGGACTACGGCATCGTTACCGAGGGCGAGGTCTGGCTGGTGCTGGACGATg                                                                                                                                           >  8:3238/1‑147 (MQ=255)    aaGATGCAGCCGCTGTCTTCGCCGAGATCGGCGAGGCGAGTGCCGGCACGGGCAAAGCCGATTCGAAGCACAAGCTGATGCACCGCACCGAAACCCTGGACTACGGCATCGTTACCGAGGGCGAGGTCTGGCTGGTGCTGGACGATg                                                                                                                                           <  7:3238/147‑1 (MQ=255)       aTGCAGCCGCTGTCTTCGCCGAGATCGGCGAGGCGAGTGCCGGCACGGGCAAAGCCGATTCGAAGCACAAGCTGATGCACCGCACCGAAACCCTGGACTACGGCATCGTTACCGAGGGCGAGGTCTGGCTGGTGCTGGACGATGGCGaa                                                                                                                                      <  7:238826/149‑1 (MQ=255)        tGCAGCCGCTGTCTTCGCCGAGATCGGCGAGGCGAGTGCCGGCACGGGCAAAGCCGATTCGAAGCACAAGCTGATGCACCGCACCGAAACCCTGGACTACGGCATCGTTACCGAGGGCGAGGTCTGGCTGGTGCTGGACGATGGCGAAg                                                                                                                                     <  3:231715/149‑1 (MQ=255)            gCCGCTGTCTTCGCCGAGATCGGCGAGGCGAGTGCCGGCACGGGCAAAGCCGATTCGAAGCACAAGCTGATGCACCGCACCGAAACCCTGGACTACGGCATCGTTACCGAGGGCGAGGTCTGGCTGGTGCTGGACGATGGCGAAGTCCa                                                                                                                                 <  7:35914/149‑1 (MQ=255)                     ttCGCCGAGATCGGCGAGGCGAGTGCCGGCACGGGCAAAGCCGATTCGAAGCATAAGCTGATGCACCGCACCGAAACCCTGGACTACGGCATCGTTACCGAGGGCGAGGTCTGGCTGGTGCTGGACGATGGCGAAGTCCACCTCAAAc                                                                                                                         >  5:40701/1‑148 (MQ=255)                     ttCGCCGAGATCGGCGAGGCGAGTGCCGGCACGGGCAAAGCCGATTCGAAGCACAAGCTGATGCACCGCACCGAAACCCTGGACTACGGCATCGTTACCGAGGGCGAGGTCTGGCTGGTGCTGGACcacgatgtcgcctcgtttgaggt                                                                                                                        >  3:154518‑M1/1‑126 (MQ=255)                     ttCGCCGAGATCGGCGAGGCGAGTGCCGGCACGGGCAAAGCCGATTCGAAGCACAAGCTGATGCACCGCACCGAAACCCTGGACTACGGCATCGTTACCGAGGGCGAGGTCTGGCTGGTGCTGGACGATGGCGAAGTCCACCTCAAAc                                                                                                                         >  4:286755/1‑148 (MQ=255)                      tCGCCGAGATCGGCGAGGCGAGTGCCGGCACGGGCAAAGCCGATTCGAAGCACAAGCTGATGCACCGCACCGAAACCCTGGACTACGGCATCGTTACCGAGGGCGAGGTCTGGCTGGTGCTGGACGATGGCGAAGTCCACCTCAAAc                                                                                                                         >  5:310709/1‑147 (MQ=255)                        gCCGAGATCGGCGAGGCGAGTGCCGGCACGGGCAAAGCCGATTCGAAGCACAAGCTGATGCACCGCACCGAAACCCTGGACTACGGCATCGTTACCGAGGGCGAGGTCTGGCTGGTGCTGGACGATGGCGAAGTCCACCTCAAACGAgg                                                                                                                     <  5:187675/149‑1 (MQ=255)                        gCCGAGATCGGCGAGGCGAGTGCCGGCACGGGCAAAGCCGATTCGAAGCACAAGCTGATGCACCGCACCGAAACCCTGGACTACGGCATCGTTACCGAGGGCGAGGTCTGGCTGGTGCTGGACGATGGCGAAGTCCACCTCAAACGAg                                                                                                                      <  5:168023/148‑1 (MQ=255)                         ccGAGATCGGCGAGGCGAGTGCCGGCACGGGCAAAGCCGATTCGAAGCACAAGCTGATGCACCGCACCGAAACCCTGGACTACGGCATCGTTACCGAGGGCGAGGTCTGGCTGGTGCTGGACGATGGCGAAGTCCACCTCAAACGAGGc                                                                                                                    <  5:35077/149‑1 (MQ=255)                          cGAGATCGGCGAGGCGAGTGCCGGCACGGGCAAAGCCGATTCGAAGCACAAGCTGATGCACCGCACCGAAACCCTGGACTACGGCATCGTTACCGAGGGCGAGGTCTGGCTGGTGCTGGACGATGGCGAAGTCCACCTCAAACGAGGc                                                                                                                    >  3:99331/1‑148 (MQ=255)                          cGAGATCGGCGAGGCGAGTGCCGGCACGGGCAAAGCCGATTCGAAGCACAAGCTGATGCACCGCAACGAAACCCTGGACTACGGCATCGTTACCGAGGGCGAGGTCTGGCTGGTGCTGGACGATGGCGAAGTCCACCTCAAACGAGGCg                                                                                                                   <  7:210345/149‑1 (MQ=255)                                          agTGCCGGCACGGGCAAAGCCGATTCGAAGCACAAGCTGATGCACCGCACCGAAACCCTGGACTACGGCATCGTTACCGAGGGCGAGGTCTGGCTGGTGCTGGACcacgatgtcgcctcgtttgaggtggacttcgccatcgtccagca                                                                                                   <  4:154518‑M1/149‑45 (MQ=255)                                          agTGCCGGCACGGGCAAAGCCGATTCGAAGCACAAGCTGATGCACCGCACCGAAACCCTGGACTACGGCATCGTTACCGAGGGCGAGGTCTGGCTGGTGCTGGACGATGGCGAAGTCCACCTCAAACGAGGCGACATCGTGGTCCAgcg                                                                                                   >  3:61963/1‑149 (MQ=255)                                              ccGGCACGGGCAAAGCCGATTCGAAGCACAAGCTGATGCACCGCACCGAAACCCTGGACTACGGCATCGTTACCGAGGGCGAGGTCTGGCTGGTGCTGGACGATGGCGAAGTCCACCTCAAACGAGGCGACATCGTGGTCCAgcgc                                                                                                  <  4:317821/146‑1 (MQ=255)                                              ccGGCACGGGCAAAGCCGATTCGAAGCACAAGCTGATGCACCGCACCGAAACCCTGGACTACGGCATCGTTACCGAGGGCGAGGTCTGGCTGGTGCTGGACGATGGCGAAGTCCACCTCAAACGAGGCGACATCGTGGTCCAgcgc                                                                                                  >  3:317821/1‑146 (MQ=255)                                               cGGCACGGGCAAAGCCGATTCGAAGCACAAGCTGATGCACCGCACCGAAACCCTGGACTACGGCATCGTTACCGAGGGCGAGGTCTGGCTGGTGCTGGACGATGGCGAAGTCCACCTCAAACGAGGCGACATCGTGGTCCAGCGCGGTa                                                                                              <  4:61963/149‑1 (MQ=255)                                               cGGCACGGGCAAAGCCGATTCGAAGCACAAGCTGATGCACCGCACCGAAACCCTGGACTACGGCATCGTTACCGAGGGCGAGGTCTGGCTGGTGCTGGACGATGGCGAAGTCCACCTCAAACGAGGCGACATCGTGGTCCAGCGCGGTa                                                                                              <  4:28028/149‑1 (MQ=255)                                               cGGCACGGGCAAAGCCGATTCGAAGCACAAGCTGATGCACCGCACCGAAACCCTGGACTACGGCATCGTTACCGAGGGCGAGGTCTGGCTGGTGCTGGACGATGGCGAAGTCCACCTCAAACGAGGCGACATCGTGGTCCAGCGCGGTa                                                                                              <  2:25950/149‑1 (MQ=255)                                                     gggCAAAGCCGATTCGAAGCACAAGCTGATGCACCGCACCGAAACCCTGGACTACGGCATCGTTACCGAGGGCGAGGTCTGGCTGGTGCTGGACGATGGCGAAGTCCACCTCAAACGAGGCGACATCGTGGTCCAGCGCGGTaccaac                                                                                         >  1:43013/1‑148 (MQ=255)                                                          aaGCCGATTCGAAGCACAAGCTGATGCACCGCACCGAAACCCTGGACTACGGCATCGTTACCGAGGGCGAGGTCTGGCTGGTGCTGGACGATGGCGAAGTCCACCTCAAACGAGGCGACATCGTGGTCCAGCGCGGTACCAACCATGcc                                                                                   >  8:103178/1‑149 (MQ=255)                                                              cGATTCGAAGCACATGCTGATGCACCGCACCGAAACCCTGGACTACGGCATCGTTACCGAGGGCGAGGTCTGGCTGGTGCTGGACGATGGCGAAGTCCACCTCAAACGAGGCGACATCGTGGTCCAGCGCGGTACCAACCATGCCTGGa                                                                               <  7:131313/149‑1 (MQ=255)                                                                    gAAGCACAAGCTGATGCACCGCACCGAAACCCTGGACTACGGCATCGTTACCGAGGGCGAGGTCTGGCTGGTGCTGGACGATGGCGAAGTCCACCTCAAACGAGGCGACATCGTGGTCCAGCGCGGTACCAACCATGCCTGGAGCAAcc                                                                         <  5:56049/149‑1 (MQ=255)                                                                    gAAGCACAAGCTGATGCACCGCACCGAAAACCTGGACTACGGCATCGTTACCGAGGGCGAGGTCTGGCTGGTGCTGGACGATGGCGAAGTCCACCTCAAACGAGGCGACATCGTGGTCCAGCGCCGTACCAACCATGCCTGGAGCAAcc                                                                         >  3:140311/1‑149 (MQ=255)                                                                         acaAGCTGATGCACCGCACCGAAACCCTGGACTACGGCATCGTTACCGAGGGCGAGGTCTGGCTGGTGCTGGACcacgatgtcgcctcgtttgaggtggacttcgccatcgtccagcaccagcc                                                                                             >  1:323872‑M1/1‑74 (MQ=255)                                                                         acaAGCTGATGCACCGCACCGAAACCCTGGACTACGGCATCGTTACCGAGGGCGAGGTCTGGCTGGTGCTGGACcacgatgtcgcctcgtttgaggtggacttcgccatcgtccagcaccagcc                                                                                             <  2:323872‑M1/124‑51 (MQ=255)                                                                         acaAGCTGATGCACCGCACCGAAACCCTGGACTACGGCATCGTTACCGAGGGCGAGGTCTGGCTGGTGCTGGACGATGGCGAAGTCCACCTCAAACGAGGCGACATCGTGGTCCAGCGCGGTACCAACCATGCCTGGAGCAACCGCAGc                                                                    <  8:286364/149‑1 (MQ=255)                                                                             gCTGATGCACCGCACCGAAACCCTGGACTACGGCATCGTTACCGAGGGCGAGGTCTGGCTGGTTCTGGACGATGGCGAAGTCCACCTCAAACGAGGCGACATCGTGGTCCAGCGCGGTACCAACCATGCCTGGAGCAACCGCAGCGAAc                                                                <  4:60201/149‑1 (MQ=255)                                                                             gCTGATGCACCGCACCGAAACCCTGGACTACGGCATCGTTACCGAGGGCGAGGTCTGGCTGGTGCTGGACGATGGCGAAGTCCACCTCAAACGAGGCGACATCGTGGTCCAGCGCGGTACCAACCATGCCTGGAGCAACCGCAGCGAAc                                                                <  4:99331/149‑1 (MQ=255)                                                                             gCTGATGCACCGCACCGAAACCCTGGACTACGGCATCGTTACCGAGGGCGAGGTCTGGCTGGTGCTGGACGATGGCGAAGTCCACCTCAAACGAGGCGACATCGTGGTCCAGCGCGGTACCAACCATGCCTGGAACAACCGCAGCGaa                                                                 >  7:255630/1‑148 (MQ=255)                                                                                 aTGCACCGCACCGAAACCCTGGACTACGGCATCGTTACCGAGGGCGAGGTCTGGCTGGTGCTGGACGATGGCGAAGTCCACCTCAAACGAGGCGACATCGTGGTCCAGCGCGGTACCCACCATCCCTGGAGCAACCGCAGCGAACAGAt                                                            >  8:104080/1‑149 (MQ=255)                                                                                       cgcaccgAAACCCTGGACTACGGCATCGTTACCGAGGGCGAGGTCTGGCTGGTGCTGGACGATGGCGAAGTCCACCTCAAACGAGGCGACATCGTGGTCCAGCGCGGTACCAACCATGCCTGGAGCAACCGCAGCGAACAGATGGCCCg                                                      <  7:69544/149‑1 (MQ=255)                                                                                           ccgAAACCCTGGACTACGGCATCGTTACCGAGGGCGAGGTCTGGCTGGTGCTGGACGATGGCGAAGTCCACCTCAAACGAGGCGACATCGTGGTCCAGCGCGGTACCAACCATGCCTGGAGCAACCGCAGCGAACAGATGGCCCGGATg                                                  <  3:132582/149‑1 (MQ=255)                                                                                            cgAAACCCTGGACTACGGCATCGTTACCGAGGGCGAGGTCTGGCTGGTGCTGGACGATGGCGAAGTCCACCTCAAACGAGGCGACATCGTGGTCCAGCGCGGTACCAACCATGCCTGGAGCAACCGCAGCGAACAGATGGCCCGGATgg                                                 >  4:300759/1‑149 (MQ=255)                                                                                              aaaCCCTGGACTACGGCATCGTTACCGAGGGCGAGGTCTGGCTGGTGCTGGACGATGGCGAAGTCCACCTCAAACGAGGCGACATCGTGGTCCAGCGCGGTACCAACCATGCCTGGAGCAACCGCAGCGAACAGATGGCCCGGATGGTc                                               <  6:310709/149‑1 (MQ=255)                                                                                               aaCCGTGGACTACGGCATGGTTACCGAGGGCGAGGTCTGGCTGGTGGTGGACGATGGCGAAGTCCACCTCAAACGAGGCGACATCGTGGTCCAGCGCGGTACCAACCATGCCTGGAGCAACCGCAGCGAACAGATGGCCCGGATGGTc                                               <  4:140311/148‑1 (MQ=255)                                                                                                  ccTGGACTACGGCATCGTTACCGAGGGCGAGGTCTGGCTGGTGCTGGACGATGGCGAAGTCCACCTCAAACGAGGCGACATCGTGGTCCAGCGCGGTACCAACCATGCCTGGAGCAACCGCAGCGAACAGATGGCCCGGATGGTCTTCa                                           >  3:270817/1‑149 (MQ=255)                                                                                                        cTACGGCATCGTTACCGAGGGCGAGGTCTGGCTGGTGCTGGACGATGGCGAAGTCCACCTCAAACGAGGCGACATCGTGGTCCAGCGCGGTACCAACCATGCCTGGAGCAACCGCAGCGAACAGATGGCCCGGATGGTCTTCATCctgc                                     <  3:286755/149‑1 (MQ=255)                                                                                                           cGGCATCGTTAACGAGGGCGAGGTCTGGCTGGTGCTGGACGATGGCGAAGTCCACCTCAAACGAGGCGACATCGTGGTCCAGCGCGGAACCAACCATCCCTGGAGCAACCGCAGCGAACAGATGGCCCGCATGGTATTCATcctcctc                                   >  2:73156/1‑147 (MQ=255)                                                                                                             gCATCGTTACCGAGGGCGAGGTCTGGCTGGTGCTGGACGATGGCGAAGTCCACCTCAAACGAGGCGACATCGTGGTCCAGCGCGGTACCAACCATGCCTGGAGCAACCGCAGCGAACAGATGGCCCGGATGGTCTTCATCCTGCTGGAt                                >  5:14835/1‑149 (MQ=255)                                                                                                               aTCGTTACCGAGGGCGAGGTCTGGCTGGTGCTGGACGATGGCGAAGTCCACCTCAAACGAGGCGACATCGTGGTCCAGCGCGGTACCAACCATGCCTgg                                                                                >  8:112792/1‑99 (MQ=255)                                                                                                               aTCGTTACCGAGGGCGAGGTCTGGCTGGTGCTGGACGATGGCGAAGTCCACCTCAAACGAGGCGACATCGTGGTCCAGCGCGGTACCAACCATGCCTgg                                                                                <  7:112792/99‑1 (MQ=255)                                                                                                                     aCCGTGGGCGAGGTCTGGCGGGGGCTGGACGTTGGCGTAGTCCACCTCAAACGAGGCGACATCGTGGTCCAGCGCGGTACCAACCATGCGTGGAGCAACCGCAGCGATCAGATGTCCGGGATGGTCTTCATCCTGCTGGATGGGCGtt                         <  1:73156/148‑1 (MQ=255)                                                                                                                     aCCGAGGGCGAGGTCTGGCTGGTGCTGGACGATGGCGAAGTCCACCTCAAACGAGGCGACATCGTGGTCCAGCGCGGTACCAACCATGCCTGGAGCAACCGCAGCGAACAGATGGCCCGGATGGTCTTCATCCTGCTGGATGGGCGtt                         <  6:40701/148‑1 (MQ=255)                                                                                                                      ccGAGGGCGAGGTCTGGCTGGTGCTGGACGATGGCGAAGTCCACCTCAAACGAGGCGACATCGTGGTCCAGCGCGGTACCAACCATGCCTGGAGCAACCGCAGCGAACAGATGGCCCGGATGGTCTTCATCCTGCTGGATGGGCGTTAt                       >  5:166559/1‑149 (MQ=255)                                                                                                                       cGAGGGCGAGGTCTGGCTGGTGCTGGACGATGGCGAAGTCCACCTCAAACGAGGCGACATCGTGGTCCAGCGCGGTACCAACCATGCCTGGAGCAACCGCAGCGAACAGATGGCCCGGATGGTCTTCa                                           <  6:229743/128‑1 (MQ=255)                                                                                                                       cGAGGGCGAGGTCTGGCTGGTGCTGGACGATGGCGAAGTCCACCTCAAACGAGGCGACATCGTGGTCCAGCGCGGTACCAACCATGCCTGGAGCAACCGCAGCGAACAGATGGCCCGGATGGTCTTCa                                           >  5:229743/1‑128 (MQ=255)                                                                                                                         aGGGCGAGGTCTGGCTGGTGCTGGACGATGGCGAAGTCCACCTCAAACGAGGCGACATCGTGGTCCAGCGCGGTACCAACCATGCCTGGAGCAACCGCAGCGAACAGATGGCCCGGATGGTCTTCATCCTGCTGGATGGGCGTTATGcc                    <  2:43013/149‑1 (MQ=255)                                                                                                                                 gTCTGGCTGGTGCTGGACGATGGCGAAGTCCACCTCAAACGAGGCGACATCGTGGTCCAGCGCGGTACCAACCATGCCTGGAGCAACCGCAGCGAACAGATGGCCCGGATGGTCTTCATCCTGCTGGATGGGCGTTATGCCGAGACACt            <  7:103178/149‑1 (MQ=255)                                                                                                                                  tCTGGCTGGTGCTGGACGATGGCGAAGTCCACCTCAAACGAGGCGACATCGTGGTCCAGCGCGGTACCAACCATGCCTGGAGCAACCGCAGCGAACAGATGGCCCGGATGGTCTTCATCCTGCTGGATGGGCGTTATGCCGAGACACTc           <  4:270817/149‑1 (MQ=255)                                                                                                                                    tggctggTGCTGGACGATGGCGAAGTCCACCTCAAACGAGGCGACATCGTGGTCCAGCGCGGTACCAACCATGCCTGGAGCAACCGCAGCGAACAGATGGCCCGGATGGTCTTCATCCTGCTGGATGGGCGTTATGCCGAGACACTc           >  7:15593/1‑147 (MQ=255)                                                                                                                                     ggctggTGCTGGACGATGGCGAAGTCCACCTCAAACGAGGCGACATCGTGgtccagcaccagccagacctcgccctcggtaacgatgccgtagtccagggtttcggtgcggtgcatcagcttgt                                 >  1:323872‑M2/1‑50 (MQ=255)                                                                                                                                     ggctggTGCTGGACGATGGCGAAGTCCACCTCAAACGAGGCGACATCGTGgtccagcaccagccagacctcgccctcggtaacgatgccgtagtccagggtttcggtgcggtgcatcagcttgt                                 <  2:323872‑M2/124‑75 (MQ=255)                                                                                                                                        tggTGCTGGACGATGGCGAAGTCCACCTCAAACGAGGCGACATCGTGGTCCAGCGCGGTACCAACCATGCCTGGAGCAACCGCAGCGAACAGATGGCCCGGATGGTCTTCATCCTGCTGGATGGGCGTTATGCCGAGACACTCAAGGAg     >  1:132441/1‑149 (MQ=255)                                                                                                                                           tGCTGGACGATGGCGAAGTCCACCTCAAACGAGGCGACATCGTGgtccagcaccagccagacctcgccctcggtaacgatgccgtagtccagggtttcggtgcggtgcatcagcttgtgcttcgaatcggctttgcccgtgccggcact  <  4:154518‑M2/149‑106 (MQ=255)                                                                                                                                                  |                                                                                                                                              CCGAAGATGCAGCCGCTGTCTTCGCCGAGATCGGCGAGGCGAGTGCCGGCACGGGCAAAGCCGATTCGAAGCACAAGCTGATGCACCGCACCGAAACCCTGGACTACGGCATCGTTACCGAGGGCGAGGTCTGGCTGGTGCTGGACGATGGCGAAGTCCACCTCAAACGAGGCGACATCGTGGTCCAGCGCGGTACCAACCATGCCTGGAGCAACCGCAGCGAACAGATGGCCCGGATGGTCTTCATCCTGCTGGATGGGCGTTATGCCGAGACACTCAAGGAGCTG  >  NC_002947/3637713‑3637999

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.