New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 3637858	48 (0.920)	4 (0.080)	4/252	NT	8.3%	coding (438/588 nt)	PP_3204	hypothetical protein
	?	NC_002947	= 3637894	43 (0.870)					coding (474/588 nt)	PP_3204	hypothetical protein

AGTGCCGGCACGGGCAAAGCCGATTCGAAGCACAAGCTGATGCACCGCACCGAAACCCTGGACTACGGCATCGTTACCGAGGGCGAGGTCTGGCTGGTGCTGGACGATGGCGAAGTCCACCTCAAACGAGGCGACATCGTGGTCCAGCGCGGTACCAACCATGCCTGGAGCAACCGCAGCGAACAGATGGCCCGGATGGTCTTCATCCTGCTGGATGGGCGTTATGCCGAGACACTCAAGGAGCTGCTGCCATGAAGCTCGCCACGTTCGACGACGGCAGCCGCGA  >  NC_002947/3637754‑3638039                                                                                                                                             |                                                                                                                                                  agTGCCGGCACGGGCAAAGCCGATTCGAAGCACAAGCTGATGCACCGCACCGAAACCCTGGACTACGGCATCGTTACCGAGGGCGAGGTCTGGCTGGTGCTGGACGATGGCGAAGTCCACCTCAAACGAGGCGACATCGTGGTCCAgcg                                                                                                                                           >  3:61963/1‑149 (MQ=255)     ccGGCACGGGCAAAGCCGATTCGAAGCACAAGCTGATGCACCGCACCGAAACCCTGGACTACGGCATCGTTACCGAGGGCGAGGTCTGGCTGGTGCTGGACGATGGCGAAGTCCACCTCAAACGAGGCGACATCGTGGTCCAgcgc                                                                                                                                          <  4:317821/146‑1 (MQ=255)     ccGGCACGGGCAAAGCCGATTCGAAGCACAAGCTGATGCACCGCACCGAAACCCTGGACTACGGCATCGTTACCGAGGGCGAGGTCTGGCTGGTGCTGGACGATGGCGAAGTCCACCTCAAACGAGGCGACATCGTGGTCCAgcgc                                                                                                                                          >  3:317821/1‑146 (MQ=255)      cGGCACGGGCAAAGCCGATTCGAAGCACAAGCTGATGCACCGCACCGAAACCCTGGACTACGGCATCGTTACCGAGGGCGAGGTCTGGCTGGTGCTGGACGATGGCGAAGTCCACCTCAAACGAGGCGACATCGTGGTCCAGCGCGGTa                                                                                                                                      <  2:25950/149‑1 (MQ=255)      cGGCACGGGCAAAGCCGATTCGAAGCACAAGCTGATGCACCGCACCGAAACCCTGGACTACGGCATCGTTACCGAGGGCGAGGTCTGGCTGGTGCTGGACGATGGCGAAGTCCACCTCAAACGAGGCGACATCGTGGTCCAGCGCGGTa                                                                                                                                      <  4:61963/149‑1 (MQ=255)      cGGCACGGGCAAAGCCGATTCGAAGCACAAGCTGATGCACCGCACCGAAACCCTGGACTACGGCATCGTTACCGAGGGCGAGGTCTGGCTGGTGCTGGACGATGGCGAAGTCCACCTCAAACGAGGCGACATCGTGGTCCAGCGCGGTa                                                                                                                                      <  4:28028/149‑1 (MQ=255)            gggCAAAGCCGATTCGAAGCACAAGCTGATGCACCGCACCGAAACCCTGGACTACGGCATCGTTACCGAGGGCGAGGTCTGGCTGGTGCTGGACGATGGCGAAGTCCACCTCAAACGAGGCGACATCGTGGTCCAGCGCGGTaccaac                                                                                                                                 >  1:43013/1‑148 (MQ=255)                 aaGCCGATTCGAAGCACAAGCTGATGCACCGCACCGAAACCCTGGACTACGGCATCGTTACCGAGGGCGAGGTCTGGCTGGTGCTGGACGATGGCGAAGTCCACCTCAAACGAGGCGACATCGTGGTCCAGCGCGGTACCAACCATGcc                                                                                                                           >  8:103178/1‑149 (MQ=255)                     cGATTCGAAGCACATGCTGATGCACCGCACCGAAACCCTGGACTACGGCATCGTTACCGAGGGCGAGGTCTGGCTGGTGCTGGACGATGGCGAAGTCCACCTCAAACGAGGCGACATCGTGGTCCAGCGCGGTACCAACCATGCCTGGa                                                                                                                       <  7:131313/149‑1 (MQ=255)                           gAAGCACAAGCTGATGCACCGCACCGAAACCCTGGACTACGGCATCGTTACCGAGGGCGAGGTCTGGCTGGTGCTGGACGATGGCGAAGTCCACCTCAAACGAGGCGACATCGTGGTCCAGCGCGGTACCAACCATGCCTGGAGCAAcc                                                                                                                 <  5:56049/149‑1 (MQ=255)                           gAAGCACAAGCTGATGCACCGCACCGAAAACCTGGACTACGGCATCGTTACCGAGGGCGAGGTCTGGCTGGTGCTGGACGATGGCGAAGTCCACCTCAAACGAGGCGACATCGTGGTCCAGCGCCGTACCAACCATGCCTGGAGCAAcc                                                                                                                 >  3:140311/1‑149 (MQ=255)                                acaAGCTGATGCACCGCACCGAAACCCTGGACTACGGCATCGTTACCGAGGGCGAGGTCTGGCTGGTGCTGGACGATGGCGAAGTCCACCTCAAACGAGGCGACATCGTGGTCCAGCGCGGTACCAACCATGCCTGGAGCAACCGCAGc                                                                                                            <  8:286364/149‑1 (MQ=255)                                    gCTGATGCACCGCACCGAAACCCTGGACTACGGCATCGTTACCGAGGGCGAGGTCTGGCTGGTTCTGGACGATGGCGAAGTCCACCTCAAACGAGGCGACATCGTGGTCCAGCGCGGTACCAACCATGCCTGGAGCAACCGCAGCGAAc                                                                                                        <  4:60201/149‑1 (MQ=255)                                    gCTGATGCACCGCACCGAAACCCTGGACTACGGCATCGTTACCGAGGGCGAGGTCTGGCTGGTGCTGGACGATGGCGAAGTCCACCTCAAACGAGGCGACATCGTGGTCCAGCGCGGTACCAACCATGCCTGGAGCAACCGCAGCGAAc                                                                                                        <  4:99331/149‑1 (MQ=255)                                    gCTGATGCACCGCACCGAAACCCTGGACTACGGCATCGTTACCGAGGGCGAGGTCTGGCTGGTGCTGGACGATGGCGAAGTCCACCTCAAACGAGGCGACATCGTGGTCCAGCGCGGTACCAACCATGCCTGGAACAACCGCAGCGaa                                                                                                         >  7:255630/1‑148 (MQ=255)                                        aTGCACCGCACCGAAACCCTGGACTACGGCATCGTTACCGAGGGCGAGGTCTGGCTGGTGCTGGACGATGGCGAAGTCCACCTCAAACGAGGCGACATCGTGGTCCAGCGCGGTACCCACCATCCCTGGAGCAACCGCAGCGAACAGAt                                                                                                    >  8:104080/1‑149 (MQ=255)                                              cgcaccgAAACCCTGGACTACGGCATCGTTACCGAGGGCGAGGTCTGGCTGGTGCTGGACGATGGCGAAGTCCACCTCAAACGAGGCGACATCGTGGTCCAGCGCGGTACCAACCATGCCTGGAGCAACCGCAGCGAACAGATGGCCCg                                                                                              <  7:69544/149‑1 (MQ=255)                                                  ccgAAACCCTGGACTACGGCATCGTTACCGAGGGCGAGGTCTGGCTGGTGCTGGACGATGGCGAAGTCCACCTCAAACGAGGCGACATCGTGGTCCAGCGCGGTACCAACCATGCCTGGAGCAACCGCAGCGAACAGATGGCCCGGATg                                                                                          <  3:132582/149‑1 (MQ=255)                                                   cgAAACCCTGGACTACGGCATCGTTACCGAGGGCGAGGTCTGGCTGGTGCTGGACGATGGCGAAGTCCACCTCAAACGAGGCGACATCGTGGTCCAGCGCGGTACCAACCATGCCTGGAGCAACCGCAGCGAACAGATGGCCCGGATgg                                                                                         >  4:300759/1‑149 (MQ=255)                                                     aaaCCCTGGACTACGGCATCGTTACCGAGGGCGAGGTCTGGCTGGTGCTGGACGATGGCGAAGTCCACCTCAAACGAGGCGACATCGTGGTCCAGCGCGGTACCAACCATGCCTGGAGCAACCGCAGCGAACAGATGGCCCGGATGGTc                                                                                       <  6:310709/149‑1 (MQ=255)                                                      aaCCGTGGACTACGGCATGGTTACCGAGGGCGAGGTCTGGCTGGTGGTGGACGATGGCGAAGTCCACCTCAAACGAGGCGACATCGTGGTCCAGCGCGGTACCAACCATGCCTGGAGCAACCGCAGCGAACAGATGGCCCGGATGGTc                                                                                       <  4:140311/148‑1 (MQ=255)                                                         ccTGGACTACGGCATCGTTACCGAGGGCGAGGTCTGGCTGGTGCTGGACGATGGCGAAGTCCACCTCAAACGAGGCGACATCGTGGTCCAGCGCGGTACCAACCATGCCTGGAGCAACCGCAGCGAACAGATGGCCCGGATGGTCTTCa                                                                                   >  3:270817/1‑149 (MQ=255)                                                               cTACGGCATCGTTACCGAGGGCGAGGTCTGGCTGGTGCTGGACGATGGCGAAGTCCACCTCAAACGAGGCGACATCGTGGTCCAGCGCGGTACCAACCATGCCTGGAGCAACCGCAGCGAACAGATGGCCCGGATGGTCTTCATCctgc                                                                             <  3:286755/149‑1 (MQ=255)                                                                  cGGCATCGTTAACGAGGGCGAGGTCTGGCTGGTGCTGGACGATGGCGAAGTCCACCTCAAACGAGGCGACATCGTGGTCCAGCGCGGAACCAACCATCCCTGGAGCAACCGCAGCGAACAGATGGCCCGCATGGTATTCATcctcctc                                                                           >  2:73156/1‑147 (MQ=255)                                                                    gCATCGTTACCGAGGGCGAGGTCTGGCTGGTGCTGGACGATGGCGAAGTCCACCTCAAACGAGGCGACATCGTGGTCCAGCGCGGTACCAACCATGCCTGGAGCAACCGCAGCGAACAGATGGCCCGGATGGTCTTCATCCTGCTGGAt                                                                        >  5:14835/1‑149 (MQ=255)                                                                      aTCGTTACCGAGGGCGAGGTCTGGCTGGTGCTGGACGATGGCGAAGTCCACCTCAAACGAGGCGACATCGTGGTCCAGCGCGGTACCAACCATGCCTgg                                                                                                                        >  8:112792/1‑99 (MQ=255)                                                                      aTCGTTACCGAGGGCGAGGTCTGGCTGGTGCTGGACGATGGCGAAGTCCACCTCAAACGAGGCGACATCGTGGTCCAGCGCGGTACCAACCATGCCTgg                                                                                                                        <  7:112792/99‑1 (MQ=255)                                                                            aCCGTGGGCGAGGTCTGGCGGGGGCTGGACGTTGGCGTAGTCCACCTCAAACGAGGCGACATCGTGGTCCAGCGCGGTACCAACCATGCGTGGAGCAACCGCAGCGATCAGATGTCCGGGATGGTCTTCATCCTGCTGGATGGGCGtt                                                                 <  1:73156/148‑1 (MQ=255)                                                                            aCCGAGGGCGAGGTCTGGCTGGTGCTGGACGATGGCGAAGTCCACCTCAAACGAGGCGACATCGTGGTCCAGCGCGGTACCAACCATGCCTGGAGCAACCGCAGCGAACAGATGGCCCGGATGGTCTTCATCCTGCTGGATGGGCGtt                                                                 <  6:40701/148‑1 (MQ=255)                                                                             ccGAGGGCGAGGTCTGGCTGGTGCTGGACGATGGCGAAGTCCACCTCAAACGAGGCGACATCGTGGTCCAGCGCGGTACCAACCATGCCTGGAGCAACCGCAGCGAACAGATGGCCCGGATGGTCTTCATCCTGCTGGATGGGCGTTAt                                                               >  5:166559/1‑149 (MQ=255)                                                                              cGAGGGCGAGGTCTGGCTGGTGCTGGACGATGGCGAAGTCCACCTCAAACGAGGCGACATCGTGGTCCAGCGCGGTACCAACCATGCCTGGAGCAACCGCAGCGAACAGATGGCCCGGATGGTCTTCa                                                                                   >  5:229743/1‑128 (MQ=255)                                                                              cGAGGGCGAGGTCTGGCTGGTGCTGGACGATGGCGAAGTCCACCTCAAACGAGGCGACATCGTGGTCCAGCGCGGTACCAACCATGCCTGGAGCAACCGCAGCGAACAGATGGCCCGGATGGTCTTCa                                                                                   <  6:229743/128‑1 (MQ=255)                                                                                aGGGCGAGGTCTGGCTGGTGCTGGACGATGGCGAAGTCCACCTCAAACGAGGCGACATCGTGGTCCAGCGCGGTACCAACCATGCCTGGAGCAACCGCAGCGAACAGATGGCCCGGATGGTCTTCATCCTGCTGGATGGGCGTTATGcc                                                            <  2:43013/149‑1 (MQ=255)                                                                                        gTCTGGCTGGTGCTGGACGATGGCGAAGTCCACCTCAAACGAGGCGACATCGTGGTCCAGCGCGGTACCAACCATGCCTGGAGCAACCGCAGCGAACAGATGGCCCGGATGGTCTTCATCCTGCTGGATGGGCGTTATGCCGAGACACt                                                    <  7:103178/149‑1 (MQ=255)                                                                                         tCTGGCTGGTGCTGGACGATGGCGAAGTCCACCTCAAACGAGGCGACATCGTGGTCCAGCGCGGTACCAACCATGCCTGGAGCAACCGCAGCGAACAGATGGCCCGGATGGTCTTCATCCTGCTGGATGGGCGTTATGCCGAGACACTc                                                   <  4:270817/149‑1 (MQ=255)                                                                                           tggctggTGCTGGACGATGGCGAAGTCCACCTCAAACGAGGCGACATCGTGGTCCAGCGCGGTACCAACCATGCCTGGAGCAACCGCAGCGAACAGATGGCCCGGATGGTCTTCATCCTGCTGGATGGGCGTTATGCCGAGACACTc                                                   >  7:15593/1‑147 (MQ=255)                                                                                            ggctggTGCTGGACGATGGCGAAGTCCACCTCAAACGAGGCGACATCGTGgtccagcaccagccagacctcgccctcggtaacgatgccgtagtccagggtttcggtgcggtgcatcagcttgt                                                                         >  1:323872‑M2/1‑50 (MQ=255)                                                                                            ggctggTGCTGGACGATGGCGAAGTCCACCTCAAACGAGGCGACATCGTGgtccagcaccagccagacctcgccctcggtaacgatgccgtagtccagggtttcggtgcggtgcatcagcttgt                                                                         <  2:323872‑M2/124‑75 (MQ=255)                                                                                               tggTGCTGGACGATGGCGAAGTCCACCTCAAACGAGGCGACATCGTGGTCCAGCGCGGTACCAACCATGCCTGGAGCAACCGCAGCGAACAGATGGCCCGGATGGTCTTCATCCTGCTGGATGGGCGTTATGCCGAGACACTCAAGGAg                                             >  1:132441/1‑149 (MQ=255)                                                                                                  tGCTGGACGATGGCGAAGTCCACCTCAAACGAGGCGACATCGTGgtccagcaccagccagacctcgccctcggtaacgatgccgtagtccagggtttcggtgcggtgcatcagcttgtgcttcgaatcggctttgcccgtgccggcact                                          <  4:154518‑M2/149‑106 (MQ=255)                                                                                                           aTGGCGAAGTCCACCTCAAACGAGGCGACATCGTGGTCCAGCGCGGTACCAACCATGCCTGGAGCAACCGCAGCGAACAGATGGCCCGGATGGTCTTCATCCTGCTGGATGGGCGTTATGCCGAGACACTCAAGGAGCTGCTGCCATg                                  >  6:90760/1‑148 (MQ=255)                                                                                                           aTGGCGAAGTCCACCTCAAACGAGGCGACATCGTGGTCCAGCGCGGTACCAACCATGCCTGGAGCAACCGCAGCGAACAGATGGCCCGGATGGTCTTCATCCTGCTGGATGGGCGTTATGCCGAGACACTCAAGGAGCTGCTACCATGa                                 <  2:132441/149‑1 (MQ=255)                                                                                                                gAAGTCCACCTCAAACGAGGCGACATCGTGGTCCAGCGCGGTACCAACCATGCCTGGAGCAACCGCAGCGAACAGATGGCCCGGATGGTCTTCATCCTGCTGGATGGGCGTTATGCCGAGACACTCAAGGAGCTGCTGCCATGAAGCTc                            <  6:166559/149‑1 (MQ=255)                                                                                                                       aCCTCAAACGAGGCGACATCGTGgtccagcaccagccagacctcgccctcggtaacgatgccgtagtccagggtttcggtgcggtgcatcagcttgtgcttcgaatcggctttgcccgtgccggcactcgcctcgccgatctcggcgaa                     >  3:154518‑M2/1‑23 (MQ=255)                                                                                                                         cTCAAACGAGGCGACATCGTGGTCCAGCGCGGTACCAACCATGCCTGGAGCAACCGCAGCGAACAGATGGCCCGGATGGTCTTCATCCTGCTGGATGGGCGTTATGCCGAGACACTCAAGGAgc                                            >  6:268944/1‑124 (MQ=255)                                                                                                                         cTCAAACGAGGCGACATCGTGGTCCAGCGCGGTACCAACCATGCCTGGAGCAACCGCAGCGAACAGATGGCCCGGATGGTCTTCATCCTGCTGGATGGGCGTTATGCCGAGACACTCAAGGAgc                                            <  5:268944/124‑1 (MQ=255)                                                                                                                         cTCAAACGAGGCGACATCGTGGTCCAGCGCGGTACCAACCATGCCTGGAGCAACCGCAGCGAACAGATGGCCCGGATGGTCTTCATCCTGCTGGATGGGCGTTATGCCGAGACACTCAAGGAGCTGCTGCCATGAAGCTCGCCACGTTc                   >  5:97774/1‑149 (MQ=255)                                                                                                                            aaaCGAGGCGACATCGTGGTCCAGCGCGGTACCAACCATGCCTGGAACAACCGCAGCGAACAGATGGCCCGGATGGTCTTCATCCTGCTGGATGGGCGTTATGCCGAGACACTCAAGGAGCTGCTGCCATGAAGCTCGCCACGTTcga                 <  8:255630/148‑1 (MQ=255)                                                                                                                              aCGAGGCGACATCGTGGTCCAGCGCGGTACCAACCATGCCTGGAGCAACCGCAGCGAACAGATGGCCCGGATGGTCTTCATCCTGCTGGATGGGCGTTATGCCGAGACACTCAAGGAGCTGCTGCCATGAAGCTCGCCACGTTcgacga              <  5:90760/149‑1 (MQ=255)                                                                                                                              aCGAGGCGACATCGTGGTCCAGCGCGGTACCAACCATGCCTGGAGCAACCGCAGCGAACAGATGGCCCGGATGGTCTTCATCCTGCTGGATGGGCGTTATGCCGAGACACTCAAGGAGCTGCTGCCATGAAGCTCGCCACGTTcgacga              >  7:92532/1‑149 (MQ=255)                                                                                                                                           gTGGTCCAGCGCGGTACCAACCATGCCTGGAGCAACCGCAGCGAACAGATGGCCCGGATGGTCTTCATCCTGCTGGATGGGCGTTATGCCGAGACACTCAAGGAGCTGCTGCCATGAAGCTCGCCACGTTCGACGACGGCAGCCGCGa  <  3:300759/148‑1 (MQ=255)                                                                                                                                             |                                                                                                                                                  AGTGCCGGCACGGGCAAAGCCGATTCGAAGCACAAGCTGATGCACCGCACCGAAACCCTGGACTACGGCATCGTTACCGAGGGCGAGGTCTGGCTGGTGCTGGACGATGGCGAAGTCCACCTCAAACGAGGCGACATCGTGGTCCAGCGCGGTACCAACCATGCCTGGAGCAACCGCAGCGAACAGATGGCCCGGATGGTCTTCATCCTGCTGGATGGGCGTTATGCCGAGACACTCAAGGAGCTGCTGCCATGAAGCTCGCCACGTTCGACGACGGCAGCCGCGA  >  NC_002947/3637754‑3638039

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.