Predicted mutation
evidence seq id position mutation freq annotation gene description
MC JC NC_002947 3,788,572 Δ23 bp 100% coding (41‑63/1392 nt) PP_3350 ← hypothetical protein

Missing coverage evidence...
   seq id start end size ←reads reads→ gene description
* * ÷ NC_002947 3788572 3788594 23 53 [0] [0] 53 PP_3350 hypothetical protein

New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_002947 = 37885710 (0.000)49 (0.950) 40/264 NT 100% coding (64/1392 nt) PP_3350 hypothetical protein
?NC_002947 3788595 = 0 (0.000)coding (40/1392 nt) PP_3350 hypothetical protein

CCAGGCCGACTCTGACAGCCGATGGTAGCGCAGGCCATCGAAAGGGGCAGTGGCCTTGGCGGGGTCGTCGAGAAAGCGGTAGTCCTCGATCCAGCGAGGGGCCCCTGGCCTCCCCGGCCGGCTCTCTTCAAGCGGGCTGGCCGCGTA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/3788425‑3788571
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑aCCATGAGGGGCAGGCATACCCCGTTCAACGGCTTGATCATCAGAATTTCCCTTCACTTGTTTTTATAATTGTTCTTACAAACTGGATAACTCTGTTAACGATTATTTTTGTTAACCATATGCGCCGTCAATAGCGTTTTGCCGTG  >  NC_002947/3788595‑3788739
                                                                                                                                                                                                                                                                                                    
CCAGGCCGACTCTGACAGCCGATGGTAGCGCAGGCCATCGAAAGGGGCAGTGGCCTTGGCGGGGTCGTCGAGAAAGCGGTAGTCCTCGATCCAGCGAGGGGCCCCTGGCCTCCCCGGCCGGCTCTCTTCAAGCGGGCTGGCCGCGTACC                                                                                                                                                 <  6:288008/149‑1
  AGGCCGACTCTGACAGCTGATGGTAGCGCAGGCCATCGAAAGGGGCAGTGGCCTTGGCGGGGTCGTCGAGAAAGCGGTAGTCCTCGATCCAGCGAGGGGCCCCTGGCCTCCCCGGCCGGCTCTCTTCAAGCGGGCTGGCCGCGTACCAT                                                                                                                                               <  4:99183/149‑1
    GCCGACTCTGACAGCCGATGGTAGCGCAGGCCATCGAAAGGGGCAGTGGCCTTGGCGGGGTCGTCGAGAAAGCGGTAGTCCTCGATCCAGCGAGGGGCCCCTGGCCTCCCCGGCCGGCTCTCTTCAAGCGGGCTGGCCGCGTACCATGA                                                                                                                                             <  3:35732/149‑1
     CCGACTCTGACAGCCGATGGTAGCGCAGGCCATCGAAAGGGGCAGTGGCCTTGGCGGGGTCGTCGAGAAAGCGGTAGTCCTCGATCCAGCGAGGGGCCCCTGGCCTCCCCGGCCGGCTCTCTTCAAGCGGGCTGGCCGCGTACCATGAG                                                                                                                                            <  5:72149/149‑1
          TCTGACAGCCGATGGTAGCGCAGGCCATCGAAAGGGGCAGTGGCCTTGGCGGGGTCGTCGAGAAAGCGGTAGTCCTCGATCCAGCGAGGGGCCCCTGGCCTCCCCGGCCGGCTCTCTTCAAGCGGGCTGGCCGCGTACCATGAGGGG                                                                                                                                         >  7:199924/1‑147
              acatcaGATTGTAGCTCAGGCCATCGAAAGGGGCAGTGTCCTTGGCGGTGTCGTCGAGAAAGCGGTAGTCCTCGATCCAGCGAGTGGCCCCTGGCCTCCCCGGCCTTCTCTCTTCAAGCGGGCTGGCCGCGTACCATGAGGGGCAG                                                                                                                                      <  1:205460/140‑1
              ACAGCCGATGGTAGCGCAGGCCATCGAAAGGGGCAGTGGCCTTGGCGGGGTCGTCGAGAAAGCGGTAGTCCTCGATCCAGCGAGGGGCCCCTGGCCTCCCCGGCCGGCTCTCTTCAAGCGGGCTGGCCGCGTACCATGAGGGGCAG                                                                                                                                      <  8:199924/146‑1
               CAGCCGATGGTAGCGCAGGCCATCGAAAGGGGCAGTGGCCTTGGCGGGGTCGTCGAGAAAGCGGTAGACAACGATCCAGCGAGGGGCCCCTGGCCTCCCCGGCCGGCTCACTACAAGCGGGCTGGCCGCGTACCATGAGGGGAAGGCA                                                                                                                                   >  4:16977/1‑148
                                GGCCATCGAAAGGGGCAGTGGCCTTGGCGGGGTCGTCGAGAAAGCGGTAGTCCTCGATCCAGCGAGGGGCCCCTGGCCTCCCCGGCCGGCTCTCTTCAAGCGGGCTGGCCGCGTACCATGAGGGGCAGGCATACCCCGTTCAACGGCTT                                                                                                                 <  2:234213/149‑1
                                   CATCGAAAGGGGCAGTGGCCTTGGCGGGGTCGTCGAGAAAGCGGTAGTCCTCGATCCAGCGAGGGGCCCCTGGCCTCCCCGGCCGGCTCTCTTCAAGCGGGCTGGCCGCGTACCATGAGGGGCAGGCATACCCCGTTCAACGGCTTGAT                                                                                                              >  1:8307/1‑149
                                       GAAAGGGGCAGTGGCCTTGGCGGGGTCGTCGAGAAAGCGGTAGTCCTCGATCCAGCGAGGGGCCCCTGGCCTCCCCGGCCGGCTCTCTTCAAGCGGGCTGGCCGCGTACCATGAGGGGCAGGCATACCCCGTTCAACGGCTTGATCATC                                                                                                          <  7:122034/149‑1
                                           GGGGCAGTGGCCTTGGCGGGGTCGTCGAGAAAGCGGTAGTCCTCGATCCAGCGAGGGGCCCCTGGCCTCCCCGGCCGGCTCTCTTCAAGCGGGCTGGCCGCGTACCATGAGGGGCAGGCATACCCCGTTCAACGGCTTGATCATCAGAA                                                                                                      >  6:131668/1‑149
                                           GGGGCAGTGGCCTTGGCGGGGTCGTCGAGAAAGCGGTAGTCCTCGATCCAGCGAGGGGCCCCTGGCCTCCCCGGCCGGCTCTCTTCAAGCGGGCTGGCCGCGTACCATGAGGGGCAGGCATACCCCGTTCAACGGCTTGATCATCAGAA                                                                                                      >  3:184777/1‑149
                                                AGTGGCCTTGGCGGGGTCGTCGAGAAAGCGGTAGTCCTCGATCCAGCGAGGGGCCCCTGGCCTCCCCGGCCGGCTCTCTTCAAGCGGGCTGGCCGCGTACCATGAGGGGCAGGCATACCCCGTTCAACGGCTTGATCATCAGAATTTCC                                                                                                 <  2:79637/149‑1
                                                       TTGGCGGGGTCGTCGAGAAAGCGGTAGTCCTCGATCCAGCGAGGGGCCCCTGGCCTCCCCGGCCGGCTCTCTTCAAGCGGGCTGGCCGCGTACCATGAGGGGCAGGCATACCCCGTTCAACGGCTTGATCATAAGAATTTCACTACAat                                                                                          >  8:200591/1‑147
                                                         GGCGGGGTCGTCGAGAAAGCGGTAGTCCTCGATCCAGCGAGGGGCCCCTGGCCTCCCCGGCCGGCTCTCTTCAAGCGGGCTGGCCGCGTACCATGAGGGGCAGGCATACCCCGTTCAACGGCTTGATCATCAGAATTTCCCTTCACTTG                                                                                        >  3:119505/1‑149
                                                           CGGGGTCGTCGAGAAAGCGGTAGTCCTCGATCCAGCGAGGGTCCCCTGGCCTCCCCGGCCGGCTCTCTTCAAGCGGGCTGGCCGCGTACCATGAGGGGCAGGCATACCCCGTTCAACGGCTTGATCATCAGAATTTCCCTTCACTTGTT                                                                                      <  4:77971/149‑1
                                                           CGGGGTCGTCGAGAAAGCGGTAGTCCTCGATCCAGCGAGGGGCCCCTGGCCTCCCCGGCCGGCTCTCTTCAAGCGGGCTGGCCGCGTACCATGAGGGGCAGGCATACCCCGTTCAACGGCTTGATCATCAGAATTTCCCTTCACTTGTT                                                                                      <  4:184777/149‑1
                                                                  GTCGAGAAAGCGGTAGTCCTCGATCCAGCGAGGGGCCCCTGGCCTCCCCGGCCGGCTCTCTTCAAGCGGGCTGGCCGCGTACCATGAGGGGCAGGCATACCCCGTTCAACGGCTTGATCATCAGAATTTCCCTTCACTTGTTTTTATAA                                                                               >  8:121932/1‑149
                                                                   TCGAGAAAGCGGTAGTCCTCGATCCAGCGAGGGGCCCCTGGCCTCCCCGGCCGGCTCTCTTCAAGCGGGCTGGCCGCGTACCATGAGGGGCAGGCATACCCCGTTCAACGGCTTGATCATCAGAATTTCCCTTCACTTGTTTTTATAAT                                                                              >  5:325013/1‑149
                                                                         AAGCGGTAGTCCTCGATCCAGCGAGGGGCCCCTGGCCTCCCCGGCCGGCTCTCTTCAAGCGGGCTGGCCGCGTACCATGAGGGGCAGGCATACCCCGTTCAACGGCTTGATCATCAGAATTTCCCTTCACTTGTTTTTATAATTGTTCT                                                                        <  7:121932/149‑1
                                                                          AGCGGTAGTCCTCGATCCAGCGAGGGGCCCCTGGCCTCCCCGGCCGGCTCTCTTCAAGCGGGCTGGCCGCGTACCATGAGGGGCAGGCATACCCCGTTCAACGGCTTGATCATCAGAATTTCCCTTCACTTGTTTTTATAATTGTTCT                                                                        >  4:226967/1‑148
                                                                                 GTCCTCGATCCAGCGAGGGGCCCCTGGCCTCCCCGGCCGGCTCTCTTCAAGCGGGCTGGCCGCGTACCATGAGGGGCAGGCATACCCCGTTCAACGGCTTGATCATCAGAATTTCCCTTCACTTGTTTTTATAATTGTTCTTACAAACT                                                                <  3:309345/149‑1
                                                                                    CTCGCTCCAGCGAGGGGCCCCTGGCCTCCCCGGCCGGCTCTCTTCAAGCGGGCTGGCCGCGTACCATGAGGGGCAGGCATACCCCGTTCAACGGCTTGATCATCAGAATTTCCCTTCACTTGTTTTTAT                                                                                 <  7:142880/129‑1
                                                                                    CTCGATCCAGCGAGGGGCCCCTGGCCTCCCCGGCCGGCTCTCTTCAAGCGGGCTGGCCGCGTACCATGAGGGGCAGGCATACCCCGTTCAACGGCTTGATCATCAGAATTTCCCTTCACTTGTTTTTATAATTGTTCTTACAAACTGGA                                                             >  1:162864/1‑149
                                                                                    CTCGATCCAGCGAGGGGCCCCTGGCCTCCCCGGCCGGCTCTCTTCAAGCGGGCTGGCCGCGTACCATGAGGGGCAGGCATACCCCGTTCAACGGCTTGATCATCAGAATTTCCCTTCACTTGTTTTTATAATTGTTCTTACAAACTGG                                                              <  1:41841/148‑1
                                                                                    CTCGATCCAGCGAGGGGCCCCTGGCCTCCCCGGCCGGCTCTCTTCAAGCGGGCTGGCCGCGTACCATGAGGGGCAGGCATACCCCGTTCAACGGCTTGATCATCAGAATTTCCCTTCACTTGTTTTTAT                                                                                 >  8:142880/1‑129
                                                                                       GATCCAGCGAGGGGCCCCTGGCCTCCCCGGCCGGCTCTCTTCAAGCGGGCTGGCCGCGTACCATGAGGGGCAGGCATACCCCGTTCAACGGCTTGATCATCAGAATTTCCCTTCACTTGTTTTTATAATTGTTCTTACAAACTGGAT                                                            <  2:8307/147‑1
                                                                                             GCGAGGGGCCCCTGGCCTCCCCGGCCGGCTCTCTTCAAGCGGGCTGGCCGCGTACCATGAGGGGCAGGCATACCCCGTTCAACGGCTTGATCATCAGAATTTCCCTTCACTTGTTTTTATAATTGTTCTTACAAACTGGATAACTCTGT                                                    <  2:56039/149‑1
                                                                                               GAGGGGCCCCTGGCCTCCCCGGCCGGCTCTCTTCAAGCGGGCTGGCCGCGTACCATGAGGGGCAGGCATACCCCGTTCAACGGCTTGATCATCAGAATTTCCCTTCACTTGTTTTTATAATTGTTCTTACAAACTGGATAACTCTGTT                                                   <  3:16977/148‑1
                                                                                                    GCCCCTGGCCTCCCCGGCCGGCTCTCTTCAAGCGGGCTGGCCGCGTACCATGAGGGGCAGGCATACCCCGTTCAACGGCTTGATCATCAGAATTTCCCTTCACTTGTTTTTATAATTGTTCTTACAAACTGGATAACTCTGTTAACGAT                                             >  5:171336/1‑149
                                                                                                    GCCCCTGGCCTCCCCGGCCGGCTCTCTTCAAGCGGGCTGGCCGCGTACCATGAGGGGCAGGCATACCCCGTTCAACGGCTTGATCATCAGAATTTCCCTTCACTTGTTTTTAT                                                                                 >  8:207302/1‑113
                                                                                                           GCCTCCCCGGCCGGCTCTCTTCAAGCGGGCTGGCCGCGTACCATGAGGGGCAGGCATACCCCGTTCAACGGCTTGATCATCAGAATTTCCCTTCACTTGTTTTTATAATTGTTCTTACAAACTGGATAACTCTGTTAACGATTATTTTT                                      <  5:131668/149‑1
                                                                                                           GCCTCCCCGGCCGGCTCTCTTCAAGCGGGCTGGCCGCGTACCATGAGGGGCAGGCATACCCCGTTCAACGGCTTGATCATCAGAATTTCCCTTCACTTGTTTTTATAATTGTTCTTACAAACTGGATAACTCTGTTAACGATTATTTTT                                      <  4:57189/149‑1
                                                                                                           GCCTCCCCGGCCGGCTCTCTTCAAGCGGGCTGGCCGCGTACCATGAGGGGCAAGCATACCCCGTTCAACGGCTTGATCATCAGAATTTCCCTTCACTTGTTTTTATAATTGTTCTTACAAACTGGATAACTCTGTTAACGATTATTTTT                                      <  3:164062/149‑1
                                                                                                                 CCGGCCGGCTCTCTTCAAGCGGGCTGGCCGCGTACCATGAGGGGCAGGCATACCCCGTTCAACGGCTTGATCATCAGAATTTCCCTTCACTTGTTTTTATAATTGTTCTTACAAACTGGATAACTCTGTTAACGATTATTTTTGTTAAC                                <  2:133533/149‑1
                                                                                                                  CGGCCGGCTCTCTTCAAGCGGGCTGGCCGCGTACCATGAGGGGCAGGCATACCCCGTTCAACGGCTTGATCATCAGAATTTCCCTTCACTTGTTTTTATAATTGTTCTTACAAACTGGATAACTCTGTTAACGATTATTTTTGTTAACC                               <  6:325013/149‑1
                                                                                                                  CGGCCGGCTCTCTTCAAGCGGGCTGGCCGCGTACCATGAGGGGCAGGCATACCCCGTTCAACGGCTTGATCATCAGAATTTCCCTTCACTTGTTTTTATAATTGTTCTTAC                                                                     >  3:209352/1‑111
                                                                                                                  CGGCCGGCTCTCTTCAAGCGGGCTGGCCGCGTACCATGAGGGGCAGGCATACCCCGTTCAACGGCTTGATCATCAGAATTTCCCTTCACTTGTTTTTATAATTGTTCTTAC                                                                     <  4:209352/111‑1
                                                                                                                          TCTCTTCAAGCGGGCTGGCCGCGTACCATGAGGGGCAGGCATACCCCGTTCAACGGCTTGATCATCAGAATTTCCCTTCACTTGTTTTTATAATTGTTCTTACAAACTGGATAACTCTGTTAACGATTATTTTTGTTAACCATATGCGC                       >  5:288688/1‑149
                                                                                                                          TCTCTTCAAGCGGGCTGGCCGCGTACCATGAGGGGCAGGCATACCCCGTTCAACGGCTTGATCATCAGAATTTCCCTTCACTTGTTTTTATAATTGTTCTTACAAACTGGATAACTCTGTTAACGATTATTTTTGTTAACCATATGCGC                       >  2:80272/1‑149
                                                                                                                            TCTTCAAGCGGGCTGGCCGCGTACCATGAGGGGCAGGCATACCCCGTTCAACGGCTTGATCATCAGAATTTCCCTTCACTTGTTTTTATAATTGTTCTTACAAACTGGATAACTCTGTTAACGATTATTTTTGTTAACCATATGCGCCG                     >  3:65122/1‑149
                                                                                                                              TTCAAGCGGGCTGGCCGCGTACCATGAGGGGCAGGCATACCCCGTTCAACGGCTTGATCATCAGAATTTCCCTTCACTTGTTTTTATAATTGTTCTTACAAACTGGATAACTCTGTTAACGATTATTTTTGTTAACCATATGCGCCGT                    >  6:4317/1‑148
                                                                                                                              TTCAAGCGGGCTGGCCGCGTACCATGAGGGGCAGGCATACCCCGTTCAACGGCTTGATCATCAGAATTTCCCTTCACTTGTTTTTATAATTGTTCTTACAAACTGGATAACTCTGTTAACGATTATTTTTGTTAACCATATGCGCCGT                    >  7:45346/1‑148
                                                                                                                                  AGCGGGCTGGCCGCGTACCATGAGGGGCAGGCATACCCCGTTCAACGGCTTGATCATCAGAATTTCCCTTCACTTGTTTTTATAATTGTTCTTACAAACTGGATAACTCTGTTAACGATTATTTTTGTTAACCATATGCGCCGTCAATA               <  5:4317/149‑1
                                                                                                                                  AGCGGGCTGGCCGCGTACCATGAGGGGCAGGCATACCCCGTTCAACGGCTTGATCATCAGAATTTCCCTTCACTTGTTTTTATAATTGTTCTTACAAACTGGATAACTCTGTTAACGATTATTTTTGTTAACCATATGCGCCGTCAA                 >  5:100086/1‑147
                                                                                                                                    CGGGCTGGCCGCGTACCATGAGGGGCAGGCATACCCCGTTCAACGGCTTGATCATCAGAATTTCCCTTCACTTGTTTTTATAATTGTTCTTACAAACTAGATAACTCTGTTAACGATTATTTTTGTTAACCATATGCGCCGTCAATAGC             <  1:80272/149‑1
                                                                                                                                     GGGCTGGCCGCGTACCATGAGGGGCAGGCATACCCCGTTCAACGGCTTGATCATCAGAATTTCCCTTCACTTGTTTTTATAATTGTTCTTACAAACTGGATAACTCTGTTAACGATTATTTTTGTTAACCATATGCGCCGTCAATAGCG            <  7:200591/149‑1
                                                                                                                                     GGGCTGGCCGCGTACCATGAGGGGCAGGCATACCCCGTTCAACGGCTTGATCATCAGAATTTCCCTTCACTTGTTTTTATAATTGTTCTTACAAACTGGATAACTCTGTTAACGATTATTTTTGTTAACCATATGCGCCGTCAATAGCG            >  8:151294/1‑149
                                                                                                                                       GCTGGCCGCGTACCATGAGGGGCAGGCATACCCCGTTCAACGGCTTGATCATCAGAATTTCCCTTC                                                                                             <  3:245123/66‑1
                                                                                                                                       GCTGGCCGCGTACCATGAGGGGCAGGCATACCCCGTTCAACGGCTTGATCATCAGAATTTCCCTTC                                                                                             >  4:245123/1‑66
                                                                                                                                                GTACCATGAGGGGCAGGCATACCCCGTTCAACGGCTTGATCATCAGAATTTCCCTTCACTTGTTTTTATAATTGTTCTTACAAACTGGATAACTCTGTTAACGATTATTTTTGTTAACCATATGCGCCGTCAATAGCGTTTTGCCGTG  >  8:278578/1‑148
                                                                                                                                                  ACCATGAGGGGCAGGCATACCCCGTTCAACGGCTTGATCATCAGAATTTCCCTTCACTTGTTTTTATAATTGTTCTTACAAACTGGAT                                                            <  6:153176/88‑1
                                                                                                                                                                                                                                                                                                    
CCAGGCCGACTCTGACAGCCGATGGTAGCGCAGGCCATCGAAAGGGGCAGTGGCCTTGGCGGGGTCGTCGAGAAAGCGGTAGTCCTCGATCCAGCGAGGGGCCCCTGGCCTCCCCGGCCGGCTCTCTTCAAGCGGGCTGGCCGCGTA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/3788425‑3788571
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑aCCATGAGGGGCAGGCATACCCCGTTCAACGGCTTGATCATCAGAATTTCCCTTCACTTGTTTTTATAATTGTTCTTACAAACTGGATAACTCTGTTAACGATTATTTTTGTTAACCATATGCGCCGTCAATAGCGTTTTGCCGTG  >  NC_002947/3788595‑3788739

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.