Predicted mutation | |||||||
---|---|---|---|---|---|---|---|
evidence | seq id | position | mutation | freq | annotation | gene | description |
MC JC | NC_002947 | 3,788,572 | Δ23 bp | 100% | coding (41‑63/1392 nt) | PP_3350 ← | hypothetical protein |
Missing coverage evidence... | ||||||||||
---|---|---|---|---|---|---|---|---|---|---|
seq id | start | end | size | ←reads | reads→ | gene | description | |||
* | * | ÷ | NC_002947 | 3788572 | 3788594 | 23 | 53 [0] | [0] 53 | PP_3350 | hypothetical protein |
New junction evidence | |||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|
seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
* | ? | NC_002947 | = 3788571 | 0 (0.000) | 49 (0.950) | 40/264 | NT | 100% | coding (64/1392 nt) | PP_3350 | hypothetical protein |
? | NC_002947 | 3788595 = | 0 (0.000) | coding (40/1392 nt) | PP_3350 | hypothetical protein |
GGTAGCGCAGGCCATCGAAAGGGGCAGTGGCCTTGGCGGGGTCGTCGAGAAAGCGGTAGTCCTCGATCCAGCGAGGGGCCCCTGGCCTCCCCGGCCGGCTCTCTTCAAGCGGGCTGGCCGCGTAGGCGGAATGGCACAGCGAAAGCACCATGAGGGGCAGGCATACCCCGTTCAACGGCTTGATCATCAGAATTTCCCTTCACTTGTTTTTATAATTGTTCTTACAAACTGGATAACTCTGTTAACGATTATTTTTGTTAACCATATGCGCCGTCAATAGCGTTTTGCCGTG > NC_002947/3788448‑3788739 | ccaggccgactctgacagccgatggtagcgcaggccatcgaaaggggcagtggccttggcggggtcgtcgagaaagcggtagtcctcgatccagcgaggggcccctggcctccccggccggctctcttcaagcgggctggccgcgtacc < 6:288008‑M2/2‑1 (MQ=255) aggccgactctgacagctgatggtagcgcaggccatcgaaaggggcagtggccttggcggggtcgtcgagaaagcggtagtcctcgatccagcgaggggcccctggcctccccggccggctctcttcaagcgggctggccgcgtaCCAt < 4:99183‑M2/4‑1 (MQ=255) gccgactctgacagccgatggtagcgcaggccatcgaaaggggcagtggccttggcggggtcgtcgagaaagcggtagtcctcgatccagcgaggggcccctggcctccccggccggctctcttcaagcgggctggccgcgtaCCATGa < 3:35732‑M2/6‑1 (MQ=255) ccgactctgacagccgatggtagcgcaggccatcgaaaggggcagtggccttggcggggtcgtcgagaaagcggtagtcctcgatccagcgaggggcccctggcctccccggccggctctcttcaagcgggctggccgcgtaCCATGAg < 5:72149‑M2/7‑1 (MQ=255) tctgacagccgatggtagcgcaggccatcgaaaggggcagtggccttggcggggtcgtcgagaaagcggtagtcctcgatccagcgaggggcccctggcctccccggccggctctcttcaagcgggctggccgcgtaCCATGAgggg > 7:199924‑M2/138‑147 (MQ=255) acatcagattgtagctcaggccatcgaaaggggcagtgtccttggcggtgtcgtcgagaaagcggtagtcctcgatccagcgagtggcccctggcctccccggccttctctcttcaagcgggctggccgcgtaCCATGAGGggcag < 1:205460‑M2/13‑1 (MQ=255) acagccgatggtagcgcaggccatcgaaaggggcagtggccttggcggggtcgtcgagaaagcggtagtcctcgatccagcgaggggcccctggcctccccggccggctctcttcaagcgggctggccgcgtaCCATGAGGggcag < 8:199924‑M2/13‑1 (MQ=255) cagccgatggtagcgcaggccatcgaaaggggcagtggccttggcggggtcgtcgagaaagcggtagacaacgatccagcgaggggcccctggcctccccggccggctcactacaagcgggctggccgcgtaCCATGAGGggaaggca > 4:16977‑M2/133‑148 (MQ=255) ggccatcgaaaggggcagtggccttggcggggtcgtcgagaaagcggtagtcctcgatccagcgaggggcccctggcctccccggccggctctcttcaagcgggctggccgcgtaCCATGAGGGGCAGGCATACCCCGTTCAACGGCtt < 2:234213‑M2/34‑1 (MQ=255) catcgaaaggggcagtggccttggcggggtcgtcgagaaagcggtagtcctcgatccagcgaggggcccctggcctccccggccggctctcttcaagcgggctggccgcgtaCCATGAGGGGCAGGCATACCCCGTTCAACGGCTTGat > 1:8307‑M2/113‑149 (MQ=255) gaaaggggcagtggccttggcggggtcgtcgagaaagcggtagtcctcgatccagcgaggggcccctggcctccccggccggctctcttcaagcgggctggccgcgtaCCATGAGGGGCAGGCATACCCCGTTCAACGGCTTGatcatc < 7:122034‑M2/41‑1 (MQ=255) ggggcagtggccttggcggggtcgtcgagaaagcggtagtcctcgatccagcgaggggcccctggcctccccggccggctctcttcaagcgggctggccgcgtaCCATGAGGGGCAGGCATACCCCGTTCAACGGCTTGATCATCAGaa > 6:131668‑M2/105‑149 (MQ=255) ggggcagtggccttggcggggtcgtcgagaaagcggtagtcctcgatccagcgaggggcccctggcctccccggccggctctcttcaagcgggctggccgcgtaCCATGAGGGGCAGGCATACCCCGTTCAACGGCTTGATCATCAGaa > 3:184777‑M2/105‑149 (MQ=255) agtggccttggcggggtcgtcgagaaagcggtagtcctcgatccagcgaggggcccctggcctccccggccggctctcttcaagcgggctggccgcgtaCCATGAGGGGCAGGCATACCCCGTTCAACGGCTTGATCATCAGAATTTcc < 2:79637‑M2/50‑1 (MQ=255) ttggcggggtcgtcgagaaagcggtagtcctcgatccagcgaggggcccctggcctccccggccggctctcttcaagcgggctggccgcgtaCCATGAGGGGCAGGCATACCCCGTTCAACGGCTTGATCATAAGAATTTCACTacaat > 8:200591‑M2/93‑147 (MQ=255) ggcggggtcgtcgagaaagcggtagtcctcgatccagcgaggggcccctggcctccccggccggctctcttcaagcgggctggccgcgtaCCATGAGGGGCAGGCATACCCCGTTCAACGGCTTGATCATCAGAATTTCCCTTCACTTg > 3:119505‑M2/91‑149 (MQ=255) cggggtcgtcgagaaagcggtagtcctcgatccagcgagggtcccctggcctccccggccggctctcttcaagcgggctggccgcgtaCCATGAGGGGCAGGCATACCCCGTTCAACGGCTTGATCATCAGAATTTCCCTTCACTTGtt < 4:77971‑M2/61‑1 (MQ=255) cggggtcgtcgagaaagcggtagtcctcgatccagcgaggggcccctggcctccccggccggctctcttcaagcgggctggccgcgtaCCATGAGGGGCAGGCATACCCCGTTCAACGGCTTGATCATCAGAATTTCCCTTCACTTGtt < 4:184777‑M2/61‑1 (MQ=255) gtcgagaaagcggtagtcctcgatccagcgaggggcccctggcctccccggccggctctcttcaagcgggctggccgcgtaCCATGAGGGGCAGGCATACCCCGTTCAACGGCTTGATCATCAGAATTTCCCTTCACTTGTTTTTATaa > 8:121932‑M2/82‑149 (MQ=255) tcgagaaagcggtagtcctcgatccagcgaggggcccctggcctccccggccggctctcttcaagcgggctggccgcgtaCCATGAGGGGCAGGCATACCCCGTTCAACGGCTTGATCATCAGAATTTCCCTTCACTTGTTTTTATAAt > 5:325013‑M2/81‑149 (MQ=255) aagcggtagtcctcgatccagcgaggggcccctggcctccccggccggctctcttcaagcgggctggccgcgtaCCATGAGGGGCAGGCATACCCCGTTCAACGGCTTGATCATCAGAATTTCCCTTCACTTGTTTTTATAATTGTTCt < 7:121932‑M2/75‑1 (MQ=255) agcggtagtcctcgatccagcgaggggcccctggcctccccggccggctctcttcaagcgggctggccgcgtaCCATGAGGGGCAGGCATACCCCGTTCAACGGCTTGATCATCAGAATTTCCCTTCACTTGTTTTTATAATTGTTCt > 4:226967‑M2/74‑148 (MQ=255) gtcctcgatccagcgaggggcccctggcctccccggccggctctcttcaagcgggctggccgcgtaCCATGAGGGGCAGGCATACCCCGTTCAACGGCTTGATCATCAGAATTTCCCTTCACTTGTTTTTATAATTGTTCTTACAAACt < 3:309345‑M2/83‑1 (MQ=255) ctcgctccagcgaggggcccctggcctccccggccggctctcttcaagcgggctggccgcgtaCCATGAGGGGCAGGCATACCCCGTTCAACGGCTTGATCATCAGAATTTCCCTTCACTTGTTTTtat < 7:142880‑M2/66‑1 (MQ=255) ctcgatccagcgaggggcccctggcctccccggccggctctcttcaagcgggctggccgcgtaCCATGAGGGGCAGGCATACCCCGTTCAACGGCTTGATCATCAGAATTTCCCTTCACTTGTTTTtat > 8:142880‑M2/64‑129 (MQ=255) ctcgatccagcgaggggcccctggcctccccggccggctctcttcaagcgggctggccgcgtaCCATGAGGGGCAGGCATACCCCGTTCAACGGCTTGATCATCAGAATTTCCCTTCACTTGTTTTTATAATTGTTCTTACAAACTgg < 1:41841‑M2/85‑1 (MQ=255) ctcgatccagcgaggggcccctggcctccccggccggctctcttcaagcgggctggccgcgtaCCATGAGGGGCAGGCATACCCCGTTCAACGGCTTGATCATCAGAATTTCCCTTCACTTGTTTTTATAATTGTTCTTACAAACTGGa > 1:162864‑M2/64‑149 (MQ=255) gatccagcgaggggcccctggcctccccggccggctctcttcaagcgggctggccgcgtaCCATGAGGGGCAGGCATACCCCGTTCAACGGCTTGATCATCAGAATTTCCCTTCACTTGTTTTTATAATTGTTCTTACAAACTGGAt < 2:8307‑M2/87‑1 (MQ=255) gcgaggggcccctggcctccccggccggctctcttcaagcgggctggccgcgtaCCATGAGGGGCAGGCATACCCCGTTCAACGGCTTGATCATCAGAATTTCCCTTCACTTGTTTTTATAATTGTTCTTACAAACTGGATAACTCTGt < 2:56039‑M2/95‑1 (MQ=255) gaggggcccctggcctccccggccggctctcttcaagcgggctggccgcgtaCCATGAGGGGCAGGCATACCCCGTTCAACGGCTTGATCATCAGAATTTCCCTTCACTTGTTTTTATAATTGTTCTTACAAACTGGATAACTCTGtt < 3:16977‑M2/96‑1 (MQ=255) gcccctggcctccccggccggctctcttcaagcgggctggccgcgtaCCATGAGGGGCAGGCATACCCCGTTCAACGGCTTGATCATCAGAATTTCCCTTCACTTGTTTTtat > 8:207302‑M2/48‑113 (MQ=255) gcccctggcctccccggccggctctcttcaagcgggctggccgcgtaCCATGAGGGGCAGGCATACCCCGTTCAACGGCTTGATCATCAGAATTTCCCTTCACTTGTTTTTATAATTGTTCTTACAAACTGGATAACTCTGTTAACGat > 5:171336‑M2/48‑149 (MQ=255) gcctccccggccggctctcttcaagcgggctggccgcgtaCCATGAGGGGCAGGCATACCCCGTTCAACGGCTTGATCATCAGAATTTCCCTTCACTTGTTTTTATAATTGTTCTTACAAACTGGATAACTCTGTTAACGATTAttttt < 5:131668‑M2/109‑1 (MQ=255) gcctccccggccggctctcttcaagcgggctggccgcgtaCCATGAGGGGCAGGCATACCCCGTTCAACGGCTTGATCATCAGAATTTCCCTTCACTTGTTTTTATAATTGTTCTTACAAACTGGATAACTCTGTTAACGATTAttttt < 4:57189‑M2/109‑1 (MQ=255) gcctccccggccggctctcttcaagcgggctggccgcgtaCCATGAGGGGCAAGCATACCCCGTTCAACGGCTTGATCATCAGAATTTCCCTTCACTTGTTTTTATAATTGTTCTTACAAACTGGATAACTCTGTTAACGATTAttttt < 3:164062‑M2/109‑1 (MQ=255) ccggccggctctcttcaagcgggctggccgcgtaCCATGAGGGGCAGGCATACCCCGTTCAACGGCTTGATCATCAGAATTTCCCTTCACTTGTTTTTATAATTGTTCTTACAAACTGGATAACTCTGTTAACGATTATTTTTGTTAAc < 2:133533‑M2/115‑1 (MQ=255) cggccggctctcttcaagcgggctggccgcgtaCCATGAGGGGCAGGCATACCCCGTTCAACGGCTTGATCATCAGAATTTCCCTTCACTTGTTTTTATAATTGTTCTTAc > 3:209352‑M2/34‑111 (MQ=255) cggccggctctcttcaagcgggctggccgcgtaCCATGAGGGGCAGGCATACCCCGTTCAACGGCTTGATCATCAGAATTTCCCTTCACTTGTTTTTATAATTGTTCTTAc < 4:209352‑M2/78‑1 (MQ=255) cggccggctctcttcaagcgggctggccgcgtaCCATGAGGGGCAGGCATACCCCGTTCAACGGCTTGATCATCAGAATTTCCCTTCACTTGTTTTTATAATTGTTCTTACAAACTGGATAACTCTGTTAACGATTATTTTTGTTAAcc < 6:325013‑M2/116‑1 (MQ=255) tctcttcaagcgggctggccgcgtaCCATGAGGGGCAGGCATACCCCGTTCAACGGCTTGATCATCAGAATTTCCCTTCACTTGTTTTTATAATTGTTCTTACAAACTGGATAACTCTGTTAACGATTATTTTTGTTAACCATATgcgc > 5:288688‑M2/26‑149 (MQ=255) tctcttcaagcgggctggccgcgtaCCATGAGGGGCAGGCATACCCCGTTCAACGGCTTGATCATCAGAATTTCCCTTCACTTGTTTTTATAATTGTTCTTACAAACTGGATAACTCTGTTAACGATTATTTTTGTTAACCATATgcgc > 2:80272‑M2/26‑149 (MQ=255) tcttcaagcgggctggccgcgtaCCATGAGGGGCAGGCATACCCCGTTCAACGGCTTGATCATCAGAATTTCCCTTCACTTGTTTTTATAATTGTTCTTACAAACTGGATAACTCTGTTAACGATTATTTTTGTTAACCATATGCGCCg > 3:65122‑M2/24‑149 (MQ=255) ttcaagcgggctggccgcgtaCCATGAGGGGCAGGCATACCCCGTTCAACGGCTTGATCATCAGAATTTCCCTTCACTTGTTTTTATAATTGTTCTTACAAACTGGATAACTCTGTTAACGATTATTTTTGTTAACCATATGCGCCGt > 6:4317‑M2/22‑148 (MQ=255) ttcaagcgggctggccgcgtaCCATGAGGGGCAGGCATACCCCGTTCAACGGCTTGATCATCAGAATTTCCCTTCACTTGTTTTTATAATTGTTCTTACAAACTGGATAACTCTGTTAACGATTATTTTTGTTAACCATATGCGCCGt > 7:45346‑M2/22‑148 (MQ=255) agcgggctggccgcgtaCCATGAGGGGCAGGCATACCCCGTTCAACGGCTTGATCATCAGAATTTCCCTTCACTTGTTTTTATAATTGTTCTTACAAACTGGATAACTCTGTTAACGATTATTTTTGTTAACCATATGCGCCGTCaa > 5:100086‑M2/18‑147 (MQ=255) agcgggctggccgcgtaCCATGAGGGGCAGGCATACCCCGTTCAACGGCTTGATCATCAGAATTTCCCTTCACTTGTTTTTATAATTGTTCTTACAAACTGGATAACTCTGTTAACGATTATTTTTGTTAACCATATGCGCCGTCAATa < 5:4317‑M2/132‑1 (MQ=255) cgggctggccgcgtaCCATGAGGGGCAGGCATACCCCGTTCAACGGCTTGATCATCAGAATTTCCCTTCACTTGTTTTTATAATTGTTCTTACAAACTAGATAACTCTGTTAACGATTATTTTTGTTAACCATATGCGCCGTCAATAGc < 1:80272‑M2/134‑1 (MQ=255) gggctggccgcgtaCCATGAGGGGCAGGCATACCCCGTTCAACGGCTTGATCATCAGAATTTCCCTTCACTTGTTTTTATAATTGTTCTTACAAACTGGATAACTCTGTTAACGATTATTTTTGTTAACCATATGCGCCGTCAATAGCg < 7:200591‑M2/135‑1 (MQ=255) gggctggccgcgtaCCATGAGGGGCAGGCATACCCCGTTCAACGGCTTGATCATCAGAATTTCCCTTCACTTGTTTTTATAATTGTTCTTACAAACTGGATAACTCTGTTAACGATTATTTTTGTTAACCATATGCGCCGTCAATAGCg > 8:151294‑M2/15‑149 (MQ=255) gctggccgcgtaCCATGAGGGGCAGGCATACCCCGTTCAACGGCTTGATCATCAGAATTTCCCTTc < 3:245123‑M2/54‑1 (MQ=255) gctggccgcgtaCCATGAGGGGCAGGCATACCCCGTTCAACGGCTTGATCATCAGAATTTCCCTTc > 4:245123‑M2/13‑66 (MQ=255) gtaCCATGAGGGGCAGGCATACCCCGTTCAACGGCTTGATCATCAGAATTTCCCTTCACTTGTTTTTATAATTGTTCTTACAAACTGGATAACTCTGTTAACGATTATTTTTGTTAACCATATGCGCCGTCAATAGCGTTTTGCCgtg > 8:278578‑M2/4‑148 (MQ=255) aCCATGAGGGGCAGGCATACCCCGTTCAACGGCTTGATCATCAGAATTTCCCTTCACTTGTTTTTATAATTGTTCTTACAAACTGGAt < 6:153176‑M2/87‑1 (MQ=255) | GGTAGCGCAGGCCATCGAAAGGGGCAGTGGCCTTGGCGGGGTCGTCGAGAAAGCGGTAGTCCTCGATCCAGCGAGGGGCCCCTGGCCTCCCCGGCCGGCTCTCTTCAAGCGGGCTGGCCGCGTAGGCGGAATGGCACAGCGAAAGCACCATGAGGGGCAGGCATACCCCGTTCAACGGCTTGATCATCAGAATTTCCCTTCACTTGTTTTTATAATTGTTCTTACAAACTGGATAACTCTGTTAACGATTATTTTTGTTAACCATATGCGCCGTCAATAGCGTTTTGCCGTG > NC_002947/3788448‑3788739 |
Alignment Legend |
---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
Reads not counted as support for junction |
read_name Not counted due to insufficient overlap past the breakpoint. |
read_name Not counted due to not crossing MOB target site duplication. |