| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_002947 | = 4122003 | 37 (0.710) | 3 (0.060) | 3/258 | NT | 7.6% | coding (633/642 nt) | PP_3625 | LysE family transporter |
| ? | NC_002947 | = 4122088 | 37 (0.730) | coding (548/642 nt) | PP_3625 | LysE family transporter | |||||
TCATCTGCGCGCTGTAGACAGTCTGGACCATCAGCAACCCGCAGACGAACCTTTCATCGTCCCGTTGATAAATCTGCCGAAGGACAGACAGTGAGCGCCTGCACGGCCGGCGAAAAACTGGGCGTTTCAGGCACCC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_002947/4121868‑4122003‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑acccGGCCGTCGCTGTCGCGCTGGGTGAACAGGGTGGTGGGCACCACCTTTATCGGTTTTGGCGCGGCGATCCTGGCGATGCGACGGCAGGGTGCCTGAAACGCCCAGTTTTTCGCCGGCCGTGCAGGCGCTCACTGTCTGTCCTTCGGCAG < NC_002947/4122088‑4121941 TCATCTGCGCGCTGTAGACAGTCTGGACCATCAGCAACCCGCAGACGAACCTTTCATCGTCCCGTTGATAAATCTGCCGAAGGACAGACAGTGAGCGCCTGCACGGTCGGCGAAAAACTGGGCGTTTCAGGCAC > 3:142354/1‑134TCATCTGCGCGCTGTAGACAGTCTGGACCATCAGCAACCCGCAGACGAACCTTTCATCGTCCCGTTGATAAATCTGCCGAAGGACAGACAGTGAGCGCCTGCACGGTCGGCGAAAAACTGGGCGTTTCAGGCAC < 4:142354/134‑1 AGGACAGACAGTGAGCGCCTGCACGGCCGGCGAAAAACTGGGCGTTTCAGGCACCCGGCCGTCGCTGTCGCGCTGGGTGAACAGGGTGGTGGGCACCACCTTTATCGGTTTTGGCGCGGCGATCCTGGCGATGCGACGGCAGGGTGCCT < 5:50041/149‑1 AGACAGTGAGCGCCTGCACGGCCGGCGAAAAACTGGGCGTTTCAGGCACCCGGCCGTCGCTGTCGCGCTGGGTGAACAGGGTGGTGGGCACCACCTTTATCGGTTTTGGCGCGGCGATCCTGGCGATGCGACGGCAGG < 1:91839/138‑1 AGACAGTGAGCGCCTGCACGGCCGGCGAAAAACTGGGCGTTTCAGGCACCCGGCCGTCGCTGTCGCGCTGGGTGAACAGGGTGGTGGGCACCACCATTATGGGTTTTTGCGCGGCGATACTGGCGATGCGACGGCAGG > 2:91839/1‑138 ACCCGGCCGTCGCTGTCGCGCTGGGTGAACAGGGTGGTGGGCACCACCTTTATCGGTTTTGGCGCGGCGATCCTGGCGATGCGACGGCAGGGTGCCTGAAACGCCCAGTTTTTCGCCGGCCGTGCAGGCGCTCACTGTCTGTCCTTCGG > 8:171067/1‑149 CCCGGCCGTCGCTGTCGCGCTGGGTGAACAGGGTGGTGGGCACCACCTTTATCGGTTTTGGCGCGGCGATCCTGGCGATGCGACGGCAGGGTGCCTGAAACGCCCAGTTTTTCGCCGGCCGTGCAGGCGCTCACTGTCTGTCCTTCGGC < 3:208550/149‑1 CCGGCCGTCGCTGTCGCGCTGGGTGAACAGGGTGGTGGGCACCACCTTTATCGGTTTTGGCGCGGCGATCCTGGCGATGCGACGGCAGGGTGCCTGAAACGCCCAGTTTTTCGCCGGCCGTGCAGGCGCTCACTGTCTGTCCTTCGGCA < 3:149628/149‑1 CGGCCGTCGCTGTCGCGCTGGGTGAACAGGGTGGTGGGCACCACCTTTATCGGTTTTGGCGCGGCGATCCTGGCGATGCGACGGCAGGGTGCCTGAAACGCCCAGTTTTTCGCCGGCCGTGCAGGCGCTCACTGTCTGTCCTTCGGCAG < 8:232992/149‑1 TCATCTGCGCGCTGTAGACAGTCTGGACCATCAGCAACCCGCAGACGAACCTTTCATCGTCCCGTTGATAAATCTGCCGAAGGACAGACAGTGAGCGCCTGCACGGCCGGCGAAAAACTGGGCGTTTCAGGCACCC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_002947/4121868‑4122003‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑acccGGCCGTCGCTGTCGCGCTGGGTGAACAGGGTGGTGGGCACCACCTTTATCGGTTTTGGCGCGGCGATCCTGGCGATGCGACGGCAGGGTGCCTGAAACGCCCAGTTTTTCGCCGGCCGTGCAGGCGCTCACTGTCTGTCCTTCGGCAG < NC_002947/4122088‑4121941 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |