New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 4122003	37 (0.710)	3 (0.060)	3/258	NT	7.6%	coding (633/642 nt)	PP_3625	LysE family transporter
	?	NC_002947	= 4122088	37 (0.730)					coding (548/642 nt)	PP_3625	LysE family transporter

TCTGCCGAAGGACAGACAGTGAGCGCCTGCACGGCCGGCGAAAAACTGGGCGTTTCAGGCACCCTGCCGTCGCATCGCCAGGATCGCCGCGCCAAAACCGATAAAGGTGGTGCCCACCACCCTGTTCACCCAGCGCGACAGCGACGGCCGGGTCAGCACCCCCTTGGCCCGCGCAGCCAGGGCGGCATACGCGCTTAGCGAAGTGAGCGACAAGGCCACGAAAATCCCGGTCAAGGTCAGGAACTGCGGCAACAGCGCAGCCCCCTGGTCGATGAACTGCGGGAACAGTGCAGTA  >  NC_002947/4121940‑4122234                                                                                                                                                     |                                                                                                                                                   tCTGCCGAAGGACAGACAGTGAGCGCCTGCACGGCCGGCGAAAAACTGGGCGTTTCAGGCACCCTGCCGTCGCATCGCCAGGATCGCCGCGCCAAAACCGATAAAGGTGGTGCCCACCACCCTGTTCACCCAGCGCGACAGCGACGGcc                                                                                                                                                    >  4:305773/1‑149 (MQ=255)  cTGCCGAAGGACAGACAGTGAGCGCCTGCACGGCCGGCGAAAAACTGGGCGTTTCAGGCACCCTGCCGTCGCATCGCCAGGATCGCCGCGCCAAAACCGATAAAGGTGGTGCCCACCACCCTGTTCACCCAGCGCGACAGCGACGGCCg                                                                                                                                                   <  8:232992‑M2/149‑2 (MQ=255)   tGCCGAAGGACAGACAGTGAGCGCCTGCACGGCCGGCGAAAAACTGGGCGTTTCAGGCACCCTGCCGTCGCATCGCCAGGATCGCCGCGCCAAAACCGATAAAGGTGGTGCCCACCACCCTGTTCACCCAGCGCGACAGCGACGGCCgg                                                                                                                                                  <  3:149628‑M2/149‑3 (MQ=255)    gCCGAAGGACAGACAGTGAGCGCCTGCACGGCCGGCGAAAAACTGGGCGTTTCAGGCACCCTGCCGTCGCATCGCCAGGATCGCCGCGCCAAAACCGATAAAGGTGGTGCCCACCACCCTGTTCACCCAGCGCGACAGCGACGGCCggg                                                                                                                                                 <  3:208550‑M2/149‑4 (MQ=255)     cccaaGGACAGACAGGGAGCGCCTGCACGGCCGGCTAAAAACTGGGCTTTTCAGGCACCCTGCCGTCGCATCGCCAGGATCGCCGCGCAAAAACCTATAAAGGTGGTGCCCACCACCCTGTTCACCCAGCGCGACAGCGACGGCCGGGt                                                                                                                                                <  4:149628/146‑1 (MQ=255)     ccGAAGGACAGACAGTGAGCGCCTGCACGGCCGGCGAAAAACTGGGCGTTTCAGGCACCCTGCCGTCGCATCGCCAGGATCGCCGCGCCAAAACCGATAAAGGTGGTGCCCACCACCCTGTTCACCCAGCGCGACAGCGACGGCCgggt                                                                                                                                                >  8:171067‑M2/1‑145 (MQ=255)                    tGAGCGCCTGCACGGCCGGCGAAAAACTGGGCGTTTCAGGCACCCTGCCGTCGCATCGCCAGGATCGCCGCGCCAAAACCGATAAAGGTGGTGCCCACCACCCTGTTCACCCAGCGCGACAGCGACGGCCGGGTCAGCACCCCCTTGGc                                                                                                                                 >  1:299635/1‑149 (MQ=255)                           cTGCACGGCCGGCGAAAAACTGGGCGTTTCAGGCACCCTGCCGTCGCATCGCCAGGATCGCCGCGCCAAAACCGATAAAGGTGGTGACCACCACCCTGTTCACCCAGCGCGACAGCGACGGCCGGGTCAGCACCCCCTTGGCCcgcg                                                                                                                            >  6:170143/1‑147 (MQ=255)                              cACGGCCGGCGAAAAACTGGGCGTTTCAGGCACCCTGCCGTCGCATCGCCAGGATCGCCGCGCCAAAACCGATAAAGGTGGTGCCCACCACCCTGTTCACCCAGCGCGACAGCGACGGCCGGGTCAGCACCCCCTTGGCCCGCGCAGcc                                                                                                                       <  4:208550/149‑1 (MQ=255)                              cACGGCCGGCGAAAAACTGGGCCTTTCAGGCACCCTGCCGTCGCATCGCCAGCATCGCCGCGCCAAAACCGATAAAGGTGGTGCCCACCACCCTGTTCACCCAGCCCGACAGCGACGGCCGGGTCAGCACCCCCATGGCCCGCGCAGc                                                                                                                        >  4:184982/1‑148 (MQ=255)                                 ggccggcGAAAAACTGGGCGTTTCAGGCACCCTGCCGTCGCATCGCCAGGATCGCCGCGCCAAAACCGATAAAGGTGGTGCCCACCACCCTGTTCACCCAGCGCGACAGCGACGGCCGGGTCAGCACCCCCTTGGCCCGCGCAGCCAgg                                                                                                                    <  8:229940/149‑1 (MQ=255)                                      gcGAAAAACTGGGCGTTTCAGGCACCCTGCCGTCGCATCGCCAGGATCGCCGCGCCAAAACCGATAAAGGTGGTGCCCACCACCCTGTTCACCCAGCGCGACAGCGACGGCCGGGTCAGCACCCCCTTGGCCCGCGCAGCCAGggcgg                                                                                                                >  4:263910/1‑148 (MQ=255)                                                    gTTTCAGGCACCCTGCCGTCGCATCGCCAGGATCGCCGCGCCAAAACCGATAAAGGTGGTGCCCACCACCCTGTTCACCCAGCGCGACAGCGACGGCCGGGTCAGCACCCCCTTGGCCCGCGCAGCCAGGGCGGCATACGCGCTTAGc                                                                                                  >  2:41423/1‑148 (MQ=255)                                                    gTTTCAGGCACCCTGCCGTCGCATCGCCAGGATCGCCGCGCCAAAACCGATAAAGGTGGTGCCCACCACCCTGTTCACCCAGCGCGACAGCGACGGCCGGGTCAGCACCCCCTTGGCCCGCGCAGCCAGGGCGGCATACGCGCTTAGCg                                                                                                 <  3:305773/149‑1 (MQ=255)                                                     tttCAGGCACCCTGCCGTCGCATCGCCAGGATCGCCGCGCCAAAACCGATAAAGGTGGTGCCCACCACCCTGTTCACCCAGCGCGACAGCGACGGCCGGGTCAGCACCCCCTTGGCCCGCGCAGCCAGGGCGGCATACGCGCTTAGCg                                                                                                 >  3:98307/1‑148 (MQ=255)                                                       tCAGGCACCCTGCCGTCGCATCGCCAGGATCGCCGCGCCAAAACCGATAAAGGTGGTGCCCACCACCCTGTTCACCCAGCGCGACAGCGACGGCCGGGTCAGCACCCCCTTGGCCCGCGCAGCCAGGGCGGCATACGCGCTTAGCGaa                                                                                               <  4:96523/148‑1 (MQ=255)                                                         aGGCACCCTGCCGTCGCATCGCCAGGATCGCCGCGCCAAAACCGATAAAGGTGGTGCCCACCACCCTGTTCACCCAGCGCGACAGCGACGGCCgggtgcctgaaacgcccagtttttcgccggccgtgcaggcgctcactgtctgtcct                                                                                            <  5:50041‑M2/149‑57 (MQ=255)                                                           gCACCCTGCCGTCGCATCGCCAGGATCGCCGCGCCAAAACCGATAAAGGTGGTGCCCACCACCCTGTTCACCCAGCGCGACAGCGACGGCCGGGTCAGCACCCCCTTGGCCCGCGCAGCCAGGGCGGCATACGCGCTTAGCGAAGTGAg                                                                                          >  8:98825/1‑149 (MQ=255)                                                               ccTGCCGTCGCATCGCCAGTATCGCCGCGCAAAAACCCATAATGGTGGTGCCCACCACCCTGTTCACCCAGCGCGACAGCGACGGCCgggtgcctgaaacgcccagtttttcgccggccgtgcaggcgctcactgtct                                                                                                 >  2:91839‑M2/1‑87 (MQ=255)                                                               ccTGCCGTCGCATCGCCAGGATCGCCGCGCCAAAACCGATAAAGGTGGTGCCCACCACCCTGTTCACCCAGCGCGACAGCGACGGCCgggtgcctgaaacgcccagtttttcgccggccgtgcaggcgctcactgtct                                                                                                 <  1:91839‑M2/138‑52 (MQ=255)                                                                   ccGTCGCTTCGGCAGGATCGCGGCGCCAAAACGCATAAAGGTGGTGCCCAGCTCCTTGTTCAACCTGCTGCACAGCGACGGCCGGGTCAGCACCCGCTTGGCCCGCTCAGCCAGGGCGGCATTCGCGCTTAGCGAAGTGAGCGACAAg                                                                                   <  4:228019/148‑1 (MQ=255)                                                                             gCCAGGATCGCCGCGCCAAAACCGATAAAGGTGGTGCCCACCACCCTGTTCACCCAGCGCGACAGCGACGGCCGGGTCAGCACCCCCTTGGCCCGCGCAGCCAGGGCGGCATACGCGCTTAGCGAAGTGAGCGACAAGGCCACGAAAAt                                                                        <  5:304074/149‑1 (MQ=255)                                                                              ccAGGATCGCCGCGCCAAAACCGATAAAGGTGGTGCCCACCACCCTGTTCACCCAGCGCGACAGCGACGGCCGGGTCAGCACCCCCTTGGCCCGCGCAGCCAGGGCGGCATACGCGCTTAGCGAAg                                                                                              <  2:27396/126‑1 (MQ=255)                                                                              ccAGGATCGCCGCGCCAAAACCGATAAAGGTGGTGCCCACCACCCTGTTCACCCAGCGCGACAGCGACGGCCGGGTCAGCACCCCCTTGGCCCGCGCAGCCAGGGCGGCATACGCGCTTAGCGAAg                                                                                              >  1:27396/1‑126 (MQ=255)                                                                               cAGGATCGCCGCGCCAAAACCGATAAAGGTGGTGCCCACCACCCTGTTCACCCAGCGCGACAGCGACGGCCGGGTCAGCACCCCCTTGGCCCGCGCAGCCAGGGCGGCATACGCGCTTAGCGAAGTGAGCGACAAGGCCACGAAAATcc                                                                      <  7:98825/149‑1 (MQ=255)                                                                               cAGGATCGCCGCGCCAAAACCGATAAAGGTGGTGCCCACCACCCTGTTCACCCAGCGCGACAGCGACGGCCGGGTCAGCACCCCCTTGGCCCGCGCAGCCAGGGCGGCATACGCGCTTAGCGAAGTGAGCGACAAGGCCACGAAAATcc                                                                      >  5:32589/1‑149 (MQ=255)                                                                                aGGATCGCCGCGCCAAAACCGATAAAGGTGGTGCCCACCACCCTGTTCACCCAGCGCGACAGCGACGGCCGGGTCAGCACCCCCTTGGCCCGCGCAGCCAGGGCGGCATACGCGCTTAGCGAAGTGAGCGACAAGGCCACGAAAATccc                                                                     <  7:283862/149‑1 (MQ=255)                                                                                 ggATCGCCGCGCCAAAACCGATAAAGGTGGTGCCCACCACCCTGTTCACCCAGCGCGACAGCGACGGCCGGGTCAGCACCCCCTTGGCCCGCGCAGCCAGGGCGGCATACGCGCTTAGCGAAGTGAGCGACAAGGCCACGAAAATCCCg                                                                    <  4:217122/149‑1 (MQ=255)                                                                                        cgcgCCAAAACCGATAAAGGTGGTGCCCACCACCCTGTTCACCCAGCGCGACAGCGACGGCCGGGTCAGCACCCCCTTGGCCCGCGCAGCCAGGGCGGCATACGCGCTTAGCGAAGTGAGCGACAAGGCCACGAAAATCCCGGTCAAgg                                                             <  1:41423/149‑1 (MQ=255)                                                                                               aaaCCGATAACGGTGGTGCCCACCACCCTGTTCACCCAGCGCTACAGCGACGGCCGGGTCAGCACCCCCTTGGCCCGCGCAGCCAGGGCGGCATACGCGCTTAGCGAAGTCAGCGACAAGGCCACGAAAATCCCGGTCAAGGTCAGGaa                                                      <  3:184982/149‑1 (MQ=255)                                                                                                      tAAAGGTGGTGCCCACCACCCTGTTCACCCAGCGCGACAGCGACGGCCGGGTCAGCACCCCCTTGGCCCGCGCAGCCAGGGCGGCATACGCGCTTAGCGAAGTGAGCGACAAGGCCACGAAAATCCCGGTCAAGGTCAGGAACTGCGGc                                               <  7:232992/149‑1 (MQ=255)                                                                                                        aaGGGGGTGCCCACCACCCTTTTCACCCAGCGCGACCGCGACGGCCGGGTCAGCACCCCCTTGGCCCGCGCAGCCAGGGCGGCATACGCGCTTAGCGAAGTGAGCGACAAGGCCACGAAAATCCCGGTCAAGGTCAGGAACTGCGGCaa                                             <  2:299635/149‑1 (MQ=255)                                                                                                            tggtgCCCACCACCCTGTTCACCCAGCGCGACAGCGACGGCCGGGTCAGCACCCCCTTGGCCCGCGCAGCCAGGGCGGCATACGCGCTTAGCGAAGTGAGCGACAAGGCCACGAAAATCCCGGTCAAGGTCAGGAACTGCGGCAACAgc                                         >  7:297413/1‑149 (MQ=255)                                                                                                                    accaccCTGTTCACCCAGCGCGACAGCGACGGCCGGGTCAGCACCCCCTTGGCCCGCGCAGCCAGGGCGGCATACGCGCTTAGCGAAGTGAGCGACAAGGCCACGAAAATCCCGGTCAAGGTCAGGAACTGCGGCAACAGCGCAGcccc                                 >  7:151321/1‑149 (MQ=255)                                                                                                                      caccCTGTTCACCCAGCGCGACAGCGACGGCCGGGTCAGCACCCCCTTGGCCCGCGCAGCCAGGGCGGCATACGCGCTTAGCGAAGTGAGCGACAAGGCCACGAAAATCCCGGTCAAGGTCAGGAACTGCGGCAACAGCGCAGCCCCCt                               >  6:239446/1‑149 (MQ=255)                                                                                                                                  ccAGCGCGACAGCGACGGCCGGGTCAGCACCCCCTTGGCCCGCGCAGCCAGGGCGGCATACGCGCTTAGCGAAGTGAGCGACAAGGCCACGAAAATCCCGGTCAAGGTCAGGAACTGCGGCAACAGCGCAGCCCCCTGGTCGATGAACt                   >  5:292744/1‑149 (MQ=255)                                                                                                                                  ccAGCGCGACAGCGACGGCCGGGTCAGCACCCCCTTGGCCCGCGCAGCCAGGGCGGCATACGCGCTTAGCGAAGTGAGCGACAAGGCCACGAAAATCCCGGTCAAGGTCAGGAACTGCGGCAACAGCGCAGCCCCCTGGTCGATGAACt                   >  3:167576/1‑149 (MQ=255)                                                                                                                                  ccAGCGCGACAGCGACGGCCGGGTCAGCACCCCCTTGGCCCGCGCAGCCAGGGCGGCATACGCGCTTAGCGAAGTGAGCGACAAGGCCACGAAAATCCCGGTCAAGGTCAGGAACTGCGGCAACAGCGCAGCCCCCTGGTCGATGAACt                   >  3:128285/1‑149 (MQ=255)                                                                                                                                    aGCGCGACAGCGACGGCCGGGTCAGCACCCCCTTGGCCCGCGCAGCCAGGGCGGCATACGCGCTTAGCGAAGTGAGCGACAAGGCCACGAAAATCCCGGTCAAGGTCAGGAACTGCGGCAACAGCGCAGCCCCCTGGTCGATGAACTGc                 <  6:32589/149‑1 (MQ=255)                                                                                                                                     gcgcGACAGCGACGGCCGGGTCAGCACCCCCTTGGCCCGCGCAGCCAGGGCGGCATACGCGCTTAGCGAAGTGAGCGACAAGGCCACGAAAATCCCGGTCAAGGTCAGGAACTGCGGCAACAGCGCAGCCCCCTGGTCGATGAACTGCg                <  4:167576/149‑1 (MQ=255)                                                                                                                                      cgcgACAGCGACGGCCGGGTCAGCACCCCCTTGGCCCGCGCAGCCAGGGCGGCATACGCGCTTAGCGAAGTGAGCGACAAGGCCACGAAAATCCCGGTCAAGGTCAGGAACTGCGGCAACAGCGCAGCCCCCTGGTCGATGAACTGCgg               <  6:29470/149‑1 (MQ=255)                                                                                                                                           cAGCGACGGCCGGGTCAGCACCCCCTTGGCCCGCGCAGCCAGGGCGGCATACGCGCTTAGCGAAGTGAGCGACAAGGCCACGAAAATCCCGGTCAAGGTCAGGAACTGCGGCAACAGCGCAGCCCCCTGGTCGATGAACTGCGGGAACa          <  5:239446/149‑1 (MQ=255)                                                                                                                                            aGCGACGGCCGGGTCAGCACCCCCTTGGCCCGCGCAGCCAGGGCGGCATACGCGCTTAGCGAAGTGAGCGACAAGGCCACGAAAATCCCGGTCAAGGTCAGGAACTGCGGCAACAGCGCAGCCCCCTGGTCGATGAACTGCGGGAACAg         >  3:223360/1‑149 (MQ=255)                                                                                                                                             gCGACGGCCGGGTCAGCACCCCCTTGGCCCGCGCAGCCAGGGCGGCATACGCGCTTAGCGAAGTGAGCGACAAGGCCACGAAAATCCCGGTCAAGGTCAGGAACTGCGGCAACAGCGCAGCCCCCTGGTCGATGAACTGCGGGAACAGt        >  7:51231/1‑149 (MQ=255)                                                                                                                                              cGACGGCCTGGTCAGCACACCCTTGGCCCGCGCAGCCATGGCGGCATACGCGCTTAGCGAAGTGAGCGACAAGGCCACGAAAATCCCGGTCAAGGTCAGGAACTGCGGCAACAGCGCAGCCCCCTGGTCGATGAACTGCGGGAACAGTg       <  8:151321/149‑1 (MQ=255)                                                                                                                                              cGACGGCCGGTTCAGCACCCCCTTGGCCCGCGCAGCCAGGGCGGCATACGCGCTTAGCGAAGTGAGCGACAAGGCCACGAAAATCCCGGTCAAGGTCAGGAACTGCGGCAACAGCGCAGCCCCCTGGTCGATGAACTGCGGGAACAGTg       <  3:263910/149‑1 (MQ=255)                                                                                                                                                  ggCCGGGTCAGCACCCCCTTGGCCCGCGCAGCCAGGGCGGCATACGCGCTTAGCGAAGTGAGCGACAAGGCCACGAAAATCCCGGTCAAGGTCAGGAACTGCGGCAACAGCGCAGCCCCCTGGTCGATGAACTGCGGGAACAGTGCAg    >  7:215520/1‑148 (MQ=255)                                                                                                                                                    ccGGGTCAGCACCCCCTTGGCCCGCGCAGCCAGGGCGGCATACGCGCTTAGCGAAGTGAGCGACAAGGCCACGAAAATCCCGGTCAAGGTCAGGAACTGCGGCAACAGCGCAGCCCCCTGGTCGATGAACTGCGGGAACAGTGCAGTa  >  8:53205/1‑148 (MQ=255)                                                                                                                                                     |                                                                                                                                                   TCTGCCGAAGGACAGACAGTGAGCGCCTGCACGGCCGGCGAAAAACTGGGCGTTTCAGGCACCCTGCCGTCGCATCGCCAGGATCGCCGCGCCAAAACCGATAAAGGTGGTGCCCACCACCCTGTTCACCCAGCGCGACAGCGACGGCCGGGTCAGCACCCCCTTGGCCCGCGCAGCCAGGGCGGCATACGCGCTTAGCGAAGTGAGCGACAAGGCCACGAAAATCCCGGTCAAGGTCAGGAACTGCGGCAACAGCGCAGCCCCCTGGTCGATGAACTGCGGGAACAGTGCAGTA  >  NC_002947/4121940‑4122234

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.