New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 4122003	37 (0.710)	3 (0.060)	3/258	NT	7.6%	coding (633/642 nt)	PP_3625	LysE family transporter
	?	NC_002947	= 4122088	37 (0.730)					coding (548/642 nt)	PP_3625	LysE family transporter

CTGCAGCTATCATCTGCGCGCTGTAGACAGTCTGGACCATCAGCAACCCGCAGACGAACCTTTCATCGTCCCGTTGATAAATCTGCCGAAGGACAGACAGTGAGCGCCTGCACGGCCGGCGAAAAACTGGGCGTTTCAGGCACCCTGCCGTCGCATCGCCAGGATCGCCGCGCCAAAACCGATAAAGGTGGTGCCCACCACCCTGTTCACCCAGCGCGACAGCGACGGCCGGGTCAGCACCCCCTTGGCCCGCGCAGCCAGGGCGGCATACGCGCTTAGCGAAGTGAGCGACA  >  NC_002947/4121859‑4122151                                                                                                                                                 |                                                                                                                                                     cTGCAGCTATCATCTGCGCGCTGTAGACAGTCTGGACCATCAGCAACCCGCAGTCGAACCTTTCATCGTCCCGTTGATAAATCTGCCGAAGGACAGACAGTGAGCGCCTGCACGGCCGGCGAAAAACTGGGCGTTTCAGGCACCCTGcc                                                                                                                                                  <  5:287339/149‑1 (MQ=255)   gCAGCTATCATCTGCGCGCTGTAGACAGTCTGGACCATCAGCAACCCGCAGACGAACCTTTCATCGTCCCGTTGATAAATCTGCCGAAGGACAGACAGTGAGCGCCTGCACGGCCGGAGAAAAACTGGGCGTTTCAGGCACCCTGCCGt                                                                                                                                                >  8:283862/1‑149 (MQ=255)       cTATCATCTGCGCGCTGTAGACAGTCTGGACCATCAGCAACCCGCAGACGAACCTTTCATCGTCCCGTTGATAAATCTGCCGAAGGACAGACAGTGAGCGCCTGCACGGCCGGCGAAAAACTGGGCGTTTCAGGCACCCTGCCGTCGCa                                                                                                                                            >  7:229940/1‑149 (MQ=255)         atcatcTGCGCGCTGTAGACAGTCTGGACCATCAGCAACCCGCAGACGAACCTTTCATCGTCCCGTTGATAAATCTGCCGAAGGACAGACAGTGAGCGCCTGCACGGCCGGCGAAAAACTGGGCGTTTCAGGCACCCTGCCGTCGCATc                                                                                                                                          >  5:248835/1‑149 (MQ=255)                gcgcgcTGTAGACAGTCTGGACCATCAGCAACCCGCAGACGAACCTTTCATCGTCCCGTTGATAAATCTGCCGAAGGACAGACAGTGAGCGCCTGCACGGCCGGCGAAAAACTGGGCGTTTCAGGCACCCTGCCGTCGCATCGCCAGGa                                                                                                                                   >  7:243544/1‑149 (MQ=255)                 cgcgcTGTAGACAGTCGGGACCATCAGCAACCCGCAGACGAACCTTTCATCGTCCCGTTGATAAATCTGCCGAAGGACAGACAGTGAGCGCCTGCACGGCCGGCGAAAAACTGGGCGTTTCAGGCACCCTGCCGTCGCATCGCCAg                                                                                                                                     <  8:241436/146‑1 (MQ=255)                                 tGGACCATCAGCAACCCGCAGACGAACCTTTCATCGTCCCGTTGATAAATCTGCCGAAGGACAGACAGTGAGCGCCTGCACGGCCGGCGAAAAACTGGGCGTTTCAGGCACCCTGCCGTCGCATCGCCAGGATCGCCGCGcc                                                                                                                         >  4:180078/1‑142 (MQ=255)                                 tGGACCATCAGCAACCCGCAGACGAACCTTTCATCGTCCCGTTGATAAATCTGCCGAAGGACAGACAGTGAGCGCCTGCACGGCCGGCGAAAAACTGGGCGTTTCAGGCACCCTGCCGTCGCATCGCCAGGATCGCCGCGcc                                                                                                                         <  3:180078/142‑1 (MQ=255)                                   gACCATCAGCAACCCGCAGACGAACCTTTCATCGTCCCGTTGATAAATCTGCCGAAGGACAGACAGTGAGCGCCTGCACGGCCGGCGAAAAACTGGGCGTTTCAGGCACCCTGCCGTCGCATCGCCAGGATCGCCGCGCCAAAACCGa                                                                                                                 >  3:96523/1‑148 (MQ=255)                                                 cGCAGACGAACCTTTCATCGTCCCGTTTATAAATCTGCCGAAGGACAGACAGTGAGCGACTGCACGGCCTGCGAAAAACTGGGAGTTTCAGGCACCCTGCCGTCGCATCGCCAGGATCGCCGCGCCAAAACCGATAAAGGTGGTGCcca                                                                                                  <  7:58571/149‑1 (MQ=255)                                                     gACGAACCTTTCATCGTCCCGTTGATAAATCTGCCGAAGGACAGACAGTGAGCGCCTGCACGGCCGGCGAAAAACTGGGCGTTTCAGGCACCCTGCCGTCGCATCGCCAGGATCGCCGCGCCAAAACCGATAAAGGTGGTGCCcaccac                                                                                              <  6:248835/149‑1 (MQ=255)                                                        gAACCTTTCATCGTCCCGTTGATAAATCTGCCGAAGGACAGACAGTGAGCGCCTGCACGGCCGGCGAAAAACTGGGCGTTTCAGGCACCCTGCCGTCGCATCGCCAGGATCGCCGCGCCAAAACCGATAAAGGTGGTGCCCACCACCCt                                                                                           >  2:166361/1‑149 (MQ=255)                                                        gAACCTTTCATCGTCCCGTTGATAAATCTGCCGAAGGACAGACAGTGAGCGCCTGCACGGCCGGCGAAAAACTGGGCGTTTCAGGCACCCTGCCGTCGCATCGCCAGGATCGCCGCGCCAAAACCGATAAAGGTGGTGCCCACCACCCt                                                                                           >  6:304074/1‑149 (MQ=255)                                                          aCCTTTCATCGTCCCGTTGATAAATCTTCCGAAGGACAGACAGTGAGAGCCTGCACGGCCGGCGAAAAACTGGGCGTTTCAGGCACCATGCCGTCGCATCGCCAGGATCGCCCCGCCAAAACCGATAAAGCTGGTGCCACCCACCCGGt                                                                                         >  3:228019/1‑149 (MQ=255)                                                               tCATCGTCCCGTTGATAAATCTGCCGAAGGACAGACAGTGAGCGCCTGCACGGCCGGCGAAAAACTGGGCGTTTCAGGCACCCTGCCGTCGCATCGCCAGGATCGCCGCGCCAAAACCGATAAAGGTGGTGCCCACCACCCTGTTCa                                                                                      <  4:299414/147‑1 (MQ=255)                                                                 aTCGTCCCGTTGATAAATCTGCCGAAGGACAGACAGTGAGCGCCTGCACGGCCGGCGAAAAACTGGGCGTTTCAGGCACCCTGCCGTCGCATCGCCAGGATCGCCGCGCCAACACCGATAAAGGTGGTGCCCACCACCCTGTTCACCCa                                                                                  >  4:180010/1‑149 (MQ=255)                                                                 aTCGTCCCGTTGATAAATCTGCCGAAGGACAGACAGTGAGCGCCTGCACGGCCGGCGAAAAACTGGGCGTTTCAGGCACCCTGCCGTCGCATCGCCAGGATCGCCGCGCCAAAACCGATAAAGGTGGTGCCCACCACCCTGTTCAcc                                                                                    >  5:29470/1‑147 (MQ=255)                                                                 aTCGTCCCGTTGATAAATCTGCCGAAGGACAGACAGTGAGCGCCTGCACGGCCGGCGAAAAACTGGGCGTTTCAGGCACCCTGCCGTCGCATCGCCAGGATCGCCGCGCCAAAACCGATAAAGGTGGTGCCCACCACCCTGTTCACCCa                                                                                  <  1:166361/149‑1 (MQ=255)                                                                     tCCCGTTGATAAATCTGCCGAAGGACAGACAGTGAGCGCCTGCACGGCCGGCGAAAAACTGGGCGTTTCAGGCACCCTGCCGTCGCATCGCCAg                                                                                                                                     >  4:112935/1‑94 (MQ=255)                                                                     tCCCGTTGATAAATCTGCCGAAGGACAGACAGTGAGCGCCTGCACGGCCGGCGAAAAACTGGGCGTTTCAGGCACCCTGCCGTCGCATCGCCAg                                                                                                                                     <  3:112935/94‑1 (MQ=255)                                                                       ccGTTGATAAATCTGCCGAAGGACAGACAGTGAGCGCCTGCACGGCCGGCGAAAAACTGGGCGTTTCAGGCACCCTGCCGTCGCATCGCCAGGATCGCCGCGCCAAAACCGATAAAGGTGGTGCCCACCACCCTGTTCACCCAGCGCGa                                                                            <  8:243544/149‑1 (MQ=255)                                                                          ttGATAAATCTGCCGAAGGACAGACAGTGAGCGCCTGCACGGCCGGCGAAAAACTGGGCGTTTCAGGCACCCTGCCGTCGCATCGCCAGGATCGCCGCGCCAAAACCGATAAAGGTGGTGCCCACCACCCTGTTCACCCAGCGCGACAg                                                                         >  3:217122/1‑149 (MQ=255)                                                                             aTAAATCTGCCGAAGGACAGACAGTGAGCGCCTGCACGGCCGGCGAAAAACTGGGCGTTTCAGGCACCCTGCCGTCGCATCGCCAGGATCGCCGCGCCAAAACCGATAAAGGTGGTGCCCACCACCCTGTTCACCCAGCGCGACAGCg                                                                       <  5:44708/148‑1 (MQ=255)                                                                                  tCTGCCGAAGGACAGACAGTGAGCGCCTGCACGGCCGGCGAAAAACTGGGCGTTTCAGGCACCCTGCCGTCGCATCGCCAGGATCGCCGCGCCAAAACCGATAAAGGTGGTGCCCACCACCCTGTTCACCCAGCGCGACAGCGACGGcc                                                                 >  4:305773/1‑149 (MQ=255)                                                                                   cTGCCGAAGGACAGACAGTGAGCGCCTGCACGGCCGGCGAAAAACTGGGCGTTTCAGGCACCCTGCCGTCGCATCGCCAGGATCGCCGCGCCAAAACCGATAAAGGTGGTGCCCACCACCCTGTTCACCCAGCGCGACAGCGACGGCCg                                                                <  8:232992‑M2/149‑2 (MQ=255)                                                                                    tGCCGAAGGACAGACAGTGAGCGCCTGCACGGCCGGCGAAAAACTGGGCGTTTCAGGCACCCTGCCGTCGCATCGCCAGGATCGCCGCGCCAAAACCGATAAAGGTGGTGCCCACCACCCTGTTCACCCAGCGCGACAGCGACGGCCgg                                                               <  3:149628‑M2/149‑3 (MQ=255)                                                                                     gCCGAAGGACAGACAGTGAGCGCCTGCACGGCCGGCGAAAAACTGGGCGTTTCAGGCACCCTGCCGTCGCATCGCCAGGATCGCCGCGCCAAAACCGATAAAGGTGGTGCCCACCACCCTGTTCACCCAGCGCGACAGCGACGGCCggg                                                              <  3:208550‑M2/149‑4 (MQ=255)                                                                                      cccaaGGACAGACAGGGAGCGCCTGCACGGCCGGCTAAAAACTGGGCTTTTCAGGCACCCTGCCGTCGCATCGCCAGGATCGCCGCGCAAAAACCTATAAAGGTGGTGCCCACCACCCTGTTCACCCAGCGCGACAGCGACGGCCGGGt                                                             <  4:149628/146‑1 (MQ=255)                                                                                      ccGAAGGACAGACAGTGAGCGCCTGCACGGCCGGCGAAAAACTGGGCGTTTCAGGCACCCTGCCGTCGCATCGCCAGGATCGCCGCGCCAAAACCGATAAAGGTGGTGCCCACCACCCTGTTCACCCAGCGCGACAGCGACGGCCgggt                                                             >  8:171067‑M2/1‑145 (MQ=255)                                                                                          aGGACAGACAGTGAGCGCCTGCACGGCCGGCGAAAAACTGGGCGTTTCAGGCACCCggccgtcgctgtcgcgctgggtgaacagggtggtgggcaccacctttatcggttttggcgcggcgatcctggcgatgcgacggcagggtgcct                                                         <  5:50041‑M1/149‑94 (MQ=255)                                                                                               agacagTGAGCGCCTGCACGGCCGGCGAAAAACTGGGCGTTTCAGGCACCCggccgtcgctgtcgcgctgggtgaacagggtggtgggcaccacctttatcggttttggcgcggcgatcctggcgatgcgacggcagg                                                               <  1:91839‑M1/138‑88 (MQ=255)                                                                                               agacagTGAGCGCCTGCACGGCCGGCGAAAAACTGGGCGTTTCAGGCACCCggccgtcgctgtcgcgctgggtgaacagggtggtgggcaccaccattatgggtttttgcgcggcgatactggcgatgcgacggcagg                                                               >  2:91839‑M1/1‑51 (MQ=255)                                                                                                     tGAGCGCCTGCACGGCCGGCGAAAAACTGGGCGTTTCAGGCACCCTGCCGTCGCATCGCCAGGATCGCCGCGCCAAAACCGATAAAGGTGGTGCCCACCACCCTGTTCACCCAGCGCGACAGCGACGGCCGGGTCAGCACCCCCTTGGc                                              >  1:299635/1‑149 (MQ=255)                                                                                                            cTGCACGGCCGGCGAAAAACTGGGCGTTTCAGGCACCCTGCCGTCGCATCGCCAGGATCGCCGCGCCAAAACCGATAAAGGTGGTGACCACCACCCTGTTCACCCAGCGCGACAGCGACGGCCGGGTCAGCACCCCCTTGGCCcgcg                                         >  6:170143/1‑147 (MQ=255)                                                                                                               cACGGCCGGCGAAAAACTGGGCGTTTCAGGCACCCTGCCGTCGCATCGCCAGGATCGCCGCGCCAAAACCGATAAAGGTGGTGCCCACCACCCTGTTCACCCAGCGCGACAGCGACGGCCGGGTCAGCACCCCCTTGGCCCGCGCAGcc                                    <  4:208550/149‑1 (MQ=255)                                                                                                               cACGGCCGGCGAAAAACTGGGCCTTTCAGGCACCCTGCCGTCGCATCGCCAGCATCGCCGCGCCAAAACCGATAAAGGTGGTGCCCACCACCCTGTTCACCCAGCCCGACAGCGACGGCCGGGTCAGCACCCCCATGGCCCGCGCAGc                                     >  4:184982/1‑148 (MQ=255)                                                                                                                  ggccggcGAAAAACTGGGCGTTTCAGGCACCCTGCCGTCGCATCGCCAGGATCGCCGCGCCAAAACCGATAAAGGTGGTGCCCACCACCCTGTTCACCCAGCGCGACAGCGACGGCCGGGTCAGCACCCCCTTGGCCCGCGCAGCCAgg                                 <  8:229940/149‑1 (MQ=255)                                                                                                                       gcGAAAAACTGGGCGTTTCAGGCACCCTGCCGTCGCATCGCCAGGATCGCCGCGCCAAAACCGATAAAGGTGGTGCCCACCACCCTGTTCACCCAGCGCGACAGCGACGGCCGGGTCAGCACCCCCTTGGCCCGCGCAGCCAGggcgg                             >  4:263910/1‑148 (MQ=255)                                                                                                                                     gTTTCAGGCACCCTGCCGTCGCATCGCCAGGATCGCCGCGCCAAAACCGATAAAGGTGGTGCCCACCACCCTGTTCACCCAGCGCGACAGCGACGGCCGGGTCAGCACCCCCTTGGCCCGCGCAGCCAGGGCGGCATACGCGCTTAGc               >  2:41423/1‑148 (MQ=255)                                                                                                                                     gTTTCAGGCACCCTGCCGTCGCATCGCCAGGATCGCCGCGCCAAAACCGATAAAGGTGGTGCCCACCACCCTGTTCACCCAGCGCGACAGCGACGGCCGGGTCAGCACCCCCTTGGCCCGCGCAGCCAGGGCGGCATACGCGCTTAGCg              <  3:305773/149‑1 (MQ=255)                                                                                                                                      tttCAGGCACCCTGCCGTCGCATCGCCAGGATCGCCGCGCCAAAACCGATAAAGGTGGTGCCCACCACCCTGTTCACCCAGCGCGACAGCGACGGCCGGGTCAGCACCCCCTTGGCCCGCGCAGCCAGGGCGGCATACGCGCTTAGCg              >  3:98307/1‑148 (MQ=255)                                                                                                                                        tCAGGCACCCTGCCGTCGCATCGCCAGGATCGCCGCGCCAAAACCGATAAAGGTGGTGCCCACCACCCTGTTCACCCAGCGCGACAGCGACGGCCGGGTCAGCACCCCCTTGGCCCGCGCAGCCAGGGCGGCATACGCGCTTAGCGaa            <  4:96523/148‑1 (MQ=255)                                                                                                                                         cAGGCACCCTGCCGTCGCATCGCCAGGATCGCCGCGCCAAAACCGATAAAGGTGGTGCCCACCACCCTGTTCa                                                                                      <  4:228046/73‑1 (MQ=255)                                                                                                                                         cAGGCACCCTGCCGTCGCATCGCCAGGATCGCCGCGCCAAAACCGATAAAGGTGGTGCCCACCACCCTGTTCa                                                                                      >  3:228046/1‑73 (MQ=255)                                                                                                                                          aGGCACCCTGCCGTCGCATCGCCAGGATCGCCGCGCCAAAACCGATAAAGGTGGTGCCCACCACCCTGTTCACCCAGCGCGACAGCGACGGCCgggtgcctgaaacgcccagtttttcgccggccgtgcaggcgctcactgtctgtcct         <  5:50041‑M2/149‑57 (MQ=255)                                                                                                                                            gCACCCTGCCGTCGCATCGCCAGGATCGCCGCGCCAAAACCGATAAAGGTGGTGCCCACCACCCTGTTCACCCAGCGCGACAGCGACGGCCGGGTCAGCACCCCCTTGGCCCGCGCAGCCAGGGCGGCATACGCGCTTAGCGAAGTGAg       >  8:98825/1‑149 (MQ=255)                                                                                                                                              aCCCggccgtcgctgtcgcgctgggtgaacagggtggtgggcaccacctttatcggttttggcgcggcgatcctggcgatgcgacggcagggtgcctgaaacgcccagtttttcgccggccgtgcaggcgctcactgtctgtccttcgg     >  8:171067‑M1/1‑4 (MQ=255)                                                                                                                                               cccggccgtcgctgtcgcgctgggtgaacagggtggtgggcaccacctttatcggttttggcgcggcgatcctggcgatgcgacggcagggtgcctgaaacgcccagtttttcgccggccgtgcaggcgctcactgtctgtccttcggc    <  3:208550‑M1/149‑147 (MQ=255)                                                                                                                                                ccggccgtcgctgtcgcgctgggtgaacagggtggtgggcaccacctttatcggttttggcgcggcgatcctggcgatgcgacggcagggtgcctgaaacgcccagtttttcgccggccgtgcaggcgctcactgtctgtccttcggca   <  3:149628‑M1/149‑148 (MQ=255)                                                                                                                                                ccTGCCGTCGCATCGCCAGTATCGCCGCGCAAAAACCCATAATGGTGGTGCCCACCACCCTGTTCACCCAGCGCGACAGCGACGGCCgggtgcctgaaacgcccagtttttcgccggccgtgcaggcgctcactgtct              >  2:91839‑M2/1‑87 (MQ=255)                                                                                                                                                ccTGCCGTCGCATCGCCAGGATCGCCGCGCCAAAACCGATAAAGGTGGTGCCCACCACCCTGTTCACCCAGCGCGACAGCGACGGCCgggtgcctgaaacgcccagtttttcgccggccgtgcaggcgctcactgtct              <  1:91839‑M2/138‑52 (MQ=255)                                                                                                                                                 cggccgtcgctgtcgcgctgggtgaacagggtggtgggcaccacctttatcggttttggcgcggcgatcctggcgatgcgacggcagggtgcctgaaacgcccagtttttcgccggccgtgcaggcgctcactgtctgtccttcggcag  <  8:232992‑M1/149‑149 (MQ=255)                                                                                                                                                 |                                                                                                                                                     CTGCAGCTATCATCTGCGCGCTGTAGACAGTCTGGACCATCAGCAACCCGCAGACGAACCTTTCATCGTCCCGTTGATAAATCTGCCGAAGGACAGACAGTGAGCGCCTGCACGGCCGGCGAAAAACTGGGCGTTTCAGGCACCCTGCCGTCGCATCGCCAGGATCGCCGCGCCAAAACCGATAAAGGTGGTGCCCACCACCCTGTTCACCCAGCGCGACAGCGACGGCCGGGTCAGCACCCCCTTGGCCCGCGCAGCCAGGGCGGCATACGCGCTTAGCGAAGTGAGCGACA  >  NC_002947/4121859‑4122151

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.