| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_002947 | 4266523 = | 29 (0.560) | 8 (0.160) | 6/252 | NT | 23.0% | intergenic (‑65/+81) | PP_3738/galP‑IV | transcriptional regulator VanR/porin‑like protein |
| ? | NC_002947 | 4266610 = | 26 (0.530) | coding (1248/1254 nt) | galP‑IV | porin‑like protein | |||||
CGACCAACCGGCGCAGCTTCAACAGTGATCTCGACCAGACGCGCCTGATCGTCAGCTATCCGCTGACCTTGTAGGGGCGGGTTCACCCGCGAACACCGGCGCAGCCGGTGCCATGTTCCGCGTTGCCTGCTTCGCGGGTGAACCCGCTCCTACAA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_002947/4266677‑4266523‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cctacaaGGTCAGCGGATAGCTGACGATCAGGCGCGTCTGGTCGAGATCACTGTTGAAGCTGCGCCGGTTGGTCGCGTTGTTCAGCCGGATGTTGAGGTTCTTCAAAGCCCCGCTCTGGAAGGTGTAGTTCACCTCGGCATCGCGCTCCC > NC_002947/4266610‑4266752 CGACCAACCGGCGCAGCTTCAACAGTGATCTCGACCAGACGCGCCTGATCGTCAGCTATCCGCTGACCTTGTAGGGGCGGGTTCACCCGCGAACACCGGCGCAGCCGGTGCCATGTTCCGCGTTGCCTGCTTCGCGGGTGAACCCGCTC < 7:190696/149‑1 ACCGGCGCAGCTTCAACAGTGATCTCGACCAGACGCGCCTGATCGTCAGCTATCCGCTGACCTTGTAGGGGCGGGTTCACCCGCGAACACCGGCGCAGCCGGTGCCATGTTCCGCGTTGCCTGCTTCGCGGGTGAACCCGCTCCTACAA > 5:105632/1‑149 GACCTTGTAGGGGCGGGTTCACCCGCGAACACCGGCGCAGCCGGTGCCATGTTCCGCGTTGCCTGCTTCGCGGGTGAACCCGCTCCTACAAGGTCAGCGGATAGCTGACGATCAGGCGCGTCTGGTCGAGATCACTGTTGAAGCTGCGC > 8:132668/1‑149 GTAGGGGCGGGTTCACCCGCGAACACCGGCGCAGCCGGTGCCATGTTCCGCGTTGCCTGCTTCGCGGGTGAACCCGCTCCTACAAGGTCAGCGGATAGCTGACGATCAGGCGCGTCTGGTCGAGATCACTGTTGAAGCTGCGCCGGTT < 7:132668/148‑1 CACCCGCGAACACCGGCGCAGCCGGTGCCATGTTCCGCGTTGCCTGCTTCGCGGGTGAACCCGCTCCTACAAGGTCAGCGGATAGCTGACGATCAGGCGCGTCTGGTCGAGATCACTGTTGAAGCTGCGCCGGTTGGTCGCGTTGTT > 3:42419/1‑147 CCGCGAACACCGGCGCAGCGGGTGCGATGTTCCGCGTTGCCTGCTTCGCGGGTGAACCCGCTCCTAGTAGGTCCGCGGATAGCTGACGATCAGGCGCGTCTGGTCGAGATCAGTGTTGAAGCTGCGCCGGTTGGTCGCGTTG < 5:223808/142‑1 CCGCGAACACCGGCGCAGCCGGTGCCATGTTCCGCGTTGCCTGCTTCGCGGGTGAACCCGCTCCTACAAGGTCAGCGGATAGCTGACGATCAGGCGCGTCTGGTCGAGATCACTGTTGAAGCTGCGCCGGTTGGTCGCGTTGTTCAGCC > 1:166239/1‑149 CCGCGAACACCGGCGCAGCCGGTGCCATGTTCCGCGTTGCCTGCTTCGCGGGTGAACCCGCTCCTACAAGGTCAGCGGATAGCTGACGATCAGGCGCGTCTGGTCGAGATCACTGTTGAAGCTCCGCCGGTGGTGCGCGTTG > 6:223808/1‑142 CCGCGAACACCGGCGCAGCCGGTGCCATGTTCCGCGTTGCCTGCTTCGCGGGTGAACCCGCCCCTACAAGGTCAGCGGATAGCTGACGATCAGGCGCGTCTGGTCGAGATCACTGTTGAAGCTGCGCCGGTTGGTCGCGTTGTTCAGCC > 5:248097/1‑149 GGGTGAACCCGCTCCTACAAGGTCAGCGGATAGCTGACGATCAGGCGCGTCTGGTCGAGATCACTGTTGAAGCTGCGCCGGTTGGTCGCGTTGTTCAGCCGGATGTTGAGGTTCTTCAAAGCCCCGCTCTGGAAGGTGTAGTTCACCTC < 4:42419/149‑1 CTACAAGGTCAGCGGATAGCTGACGATCAGGCGCGTCTGGTCGAGATCACTGTTGAAGCTGCGCCGGTTGGTCGCGTTGTTCAGCCGGATGTTGAGGTTCTTCAAAGCCCCGCTCTGGAAGGTGTAGTTCACCTCGGCATCGCGCTCCC < 8:76912/149‑1 CGACCAACCGGCGCAGCTTCAACAGTGATCTCGACCAGACGCGCCTGATCGTCAGCTATCCGCTGACCTTGTAGGGGCGGGTTCACCCGCGAACACCGGCGCAGCCGGTGCCATGTTCCGCGTTGCCTGCTTCGCGGGTGAACCCGCTCCTACAA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_002947/4266677‑4266523‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cctacaaGGTCAGCGGATAGCTGACGATCAGGCGCGTCTGGTCGAGATCACTGTTGAAGCTGCGCCGGTTGGTCGCGTTGTTCAGCCGGATGTTGAGGTTCTTCAAAGCCCCGCTCTGGAAGGTGTAGTTCACCTCGGCATCGCGCTCCC > NC_002947/4266610‑4266752 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |