New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	4266523 =	29 (0.560)	8 (0.160)	6/252	NT	23.0%	intergenic (‑65/+81)	PP_3738/galP‑IV	transcriptional regulator VanR/porin‑like protein
	?	NC_002947	4266610 =	26 (0.530)					coding (1248/1254 nt)	galP‑IV	porin‑like protein

AGCGCTCGCCGGCCGCCAACTCGCCTGAAGCGATCATCTTGCGCAACGCAACCAGCACCATCTGACCGGGTTTGCTCATCCAGGCGACTTCCAAAGACATGAGCGGGCATCTTAGCGCAAGCCGAGGGGTTGCTG‑CAGGCCTGTTGTAGGAGCGGGTTCACCCGCGAAGCAGGCAACGCGGAACATGGCACCGGCTGCGCCGGTGTTCGCGGGTGAACCCGCCCCTACAAGGTCAGCGGATAGCTGACGATCAGGCGCGTCTGGTCGAGATCACTGTTGAAGCTGCGCCGGT  >  NC_002947/4266380‑4266671                                                                                                                                                 |                                                                                                                                                     aGCGCTCGCCGGCCGCCAACTCGCCTGAAGCGATCATCTTGCGCAACGCAACCAGCACCATCTGACCGGGTTTGCTCATCCAGGCGACTTCCAAAGACATGAGCGGGCATCTTAGCGCAAGCCGAGGGGTTGCTG‑CAGGCCTGTTGTAg                                                                                                                                                 <  3:44976/149‑1 (MQ=255)  gggagcgcgatgccgaggtgaactacaccttccagagcggggctttgaagaacctcaacatccggctgaacaacgcgaccaaccggcgcagcttcaacagtgatctcgaccagacgcgcctgatcgtcagctatccgctgaccTTGTAg                                                                                                                                                 <  8:76912‑M1/6‑1 (MQ=255)          cggccgCCAACTCGCCTGAAGCGATCATCTTGCGCAACGCAACCAGCACCATCTGACCGGGTTTGCTCATCCAGGCGACTTCCAAAGACATGAGCGGGCATCTTAGCGCAAGCCGAGGGGTTGCTG‑CAGGCCTGTTGTAGGAGCGGGtt                                                                                                                                        <  4:73743/149‑1 (MQ=255)                gaggtgaactacaccttccagagcggggctttgaagaacctcaacatccggctgaacaacgcgaccaaccggcgcagcttcaacagtgatctcgaccagacgcgcctgatcgtcagctatccgctgaccTTGTAGGAGCGGGTTCAccc                                                                                                                                   <  4:42419‑M1/20‑1 (MQ=255)                ccAACTCGCCTGAAGCGATCATCTTGCGCAACGCAACCAGCACCATCTGACCGGGTTTGCTCATCCAGGCGACTTCCAAAGACATGAGCGGGCATCTTAGCGCAAGCCGAGGGGTTGCTG‑CAGGCCTGTTGTAGGAGCGGGTTCACCcg                                                                                                                                  >  8:291976/1‑149 (MQ=255)                     tCGCCTGAAGCGATCATCTTGCGCAACGCAACCAGCACCATCTGACCGGGTTTGCTCATCCAGGCGACTTCCAAAGACATGAGCGGGCATCTTAGCGCAAGCCGAGGGGTTGCTG‑CAGGCCTGTTGTAGGAGCGGGTTCACCCGCGAAg                                                                                                                             >  2:213118/1‑149 (MQ=255)                       gCCTGCAGCGATCATCTTGCGCAACGCAACCAGCACCATCTGACCGGGTTTGCTCATCCAGGCGACTTCCAAAGACATGAGCGGGCATCTTAGCGCAAGCCGAGGGGTTGCTGACAGGCCTGTTGTAGGAGCGGGTTCACCCGCGAAg                                                                                                                             <  1:213118/148‑1 (MQ=255)                       gCCTGAAGCGATCATCTTGCGCAACGCAACCAGCACCATCTGACCGGGTTTGCTCATCCAGGCGACTTCCAAAGACATGAGCGGGCATCTTAGCGCAAGCCGAGGGGTTGCTG‑CAGGCCTGTTGTAGGAGCGGGTTCACCCGCGAAg                                                                                                                             >  1:197160/1‑147 (MQ=255)                            aaGCGATCATCTTGCGCAACGCAACCAGCACCATCTGACCGGGTTTGCTCATCCAGGCGACTTCCAAAGACATGAGCGGGCATCTTAGCGCAAGCCGAGGGGTTGCTG‑CAGGCCTGTTGTAGGAGCGGGTTCACCCGCGAAGCAGGCaa                                                                                                                      >  3:299185/1‑149 (MQ=255)                                         gcgcAACGCAACCAGCACCATCTGACCGGGTTTGCTCATCCAGGCGACTTCCAAAGACATGAGCGGGCATCTTAGCGCAAGCCGAGGGGTTGCTG‑CAGGCCTGTTGTAGGAGCGGGTTCACCCGCGAAGCAGGCAACGCGGAACa                                                                                                             <  6:31698/145‑1 (MQ=255)                                           gcaacgcaacCAGCACCATCTGACCGGGTTTGCTCATCCAGGCGACTTCCAAAGACATGAGCGGGCATCTTAGCGCAAGCCGAGGGGTTGCTG‑CAGGCCTGTTGTAGGAGCGGGTTCACCCGCGAAGCAGGCAACGCGGAACATGGCAc                                                                                                       >  2:315696/1‑149 (MQ=255)                                                gcaacCAGCACCATCTGACCGGGTTTGCTCATCCAGGCGACTTCCAAAGACATGAGCGGGCATCTTAGCGCAAGCCGAGGGGTTGCTG‑CAGGCCTGTTGTAGGAGCGGGTTCACCCGCGAAGCAGGCACCGCGGAACATGGCACCGGCt                                                                                                  >  8:63647/1‑149 (MQ=255)                                                           cATCTGACCGGGTTTGCTCATCCAGGCGACTTCCAAAGACATGAGCGGGCATCTTAGCGCAAGCCGAGGGGTTGCTG‑CAGGCCTGTTGTAGGAGCGGGTTCACCCGCGAAGCAGGCAACGCGGAACATGGCACCGGCTGCGCCGGTGtt                                                                                       >  4:235706/1‑149 (MQ=255)                                                                 ggctgaacaacgcgaccaaccggcgcagcttcaacagtgatctcgaccagacgcgcctgatcgtcagctatccgctgaccTTGTAGGGGCGGGTTCACCCGCGAAGCAGGCAACGCGGAACATGGCACCGGCTGCGCCGGTGTTCGCgg                                                                                  >  5:248097‑M1/81‑149 (MQ=255)                                                                 ggctgaacaacgcgaccaaccggcgcagcttcaacagtgatctcgaccagacgcgcctgatcgtcagctatccgctgaccTTGTAGGAGCGGGTTCACCCGCGAAGCAGGCAACGCGGAACATGGCACCGGCTGCGCCGGTGTTCGCgg                                                                                  >  1:166239‑M1/81‑149 (MQ=255)                                                                 aCCGGGTTTGCTCATCCAGGCGACTTCCAAAGACATGAGCGGGCATCTTAGCGCAAGCCGAGGGGTTGCTG‑CAGGCCTGTTGTAGGAGCGGGTTCACCCGCGAAGCAGGCAACGCGGAACATGGCACCGGCTGCGCCGGTGTTcgcg                                                                                   <  2:268302/147‑1 (MQ=255)                                                                 aCCGGGTTTGCTCATCCAGGCGACTTCCAAAGACATGAGCGGGCATCTTAGCGCAAGCCGAGGGGTTGCTG‑CAGGCCTGTTGTAGGAGCGGGTTCACCCGCGAAGCAGGCAACGCGGAACATGGCACCGGCTGCGCCGGTGTTCGCggg                                                                                 <  2:191134/149‑1 (MQ=255)                                                                      gTTTTCTCATCCAGGGGACTTCCAAAGACATGAGCGGGCATCTTAGCGCAAGCCGAGGGGTTGCTG‑CAGGCCTGTCGTAGGAGCGGGTTCACCCGCGAAGCAGGCAACGCGGAACATGGCACCGGCTGCGCCGGTGTTCGCGGGTGAAc                                                                            <  6:214899/149‑1 (MQ=255)                                                                      gTTTGCTCATCCAGGCGACTTCCAAAGACATGAGCGGGCATCTTAGCGCAAGCCGAGGGGTTGCTG‑CAGGCCTGTTGTAGGAGCGGGTTCACCCGCGAAGCAGGCAACGCGGAACATGGCACCGGCTGCGCCGGTGTTCGCGGGTGAAc                                                                            <  3:235706/149‑1 (MQ=255)                                                                      gTTTGCTCATCCAGGCGACTTCCAAAGACATGAGCGGGCATCTTAGCGCAAGCCGAGGGGTTGCTG‑CAGGCCTGTTGTAGGAGCGGGTTCACCCGCGAAGCAGGCAACGCGGAACATGGCACCGGCTGCGCCGGTGTTCGCGGGTGAAc                                                                            >  3:34931/1‑149 (MQ=255)                                                                      aacaacgcgaccaaccggcgcagcttcaacagtgatctcgaccagacgcgcctgatcgtcagctatccgctgaccTTGTAGGAGCGGGTTCACCCGCGAAGCAGGCAACGCGGAACATGGCACCGGCTGCGCCGGTGTTCGCGGGTg                                                                               >  3:42419‑M1/76‑147 (MQ=255)                                                                        caacgcgcaccaccggcggagcttcaacagtgatctcgaccagacgcgcctgatcgtcagctatccgctgaccTTGTAGGAGCGGGTTCACCCGCGAAGCAGGCAACGCGGAACATGGCACCGGCTGCGCCGGTGTTCGCgg                                                                                  >  6:223808‑M1/74‑142 (MQ=255)                                                                        caacgcgaccaaccggcgcagcttcaacactgatctcgaccagacgcgcctgatcgtcagctatccgcggaccTACTAGGAGCGGGTTCACCCGCGAAGCAGGCAACGCGGAACATCGCACCCGCTGCGCCGGTGTTCGCgg                                                                                  <  5:223808‑M1/69‑1 (MQ=255)                                                                              aaccAGGCGACTTCCAAAGACATGAGCGGGCATCTTAGCGCAAGCCGAGGGGTTGCTG‑CAGGCCTGTTGTAGGCGCGGGTTCACCCGCGAAGCAGGCAACGCGGAACATGGCACCGGCTGCGCCGGTGTTCGCGGCTGAACCCGcccc                                                                     >  2:168602/3‑148 (MQ=255)                                                                              aTCCAGGCGACTTCCAAAGACATGAGCGGGCATCTTAGCGCAAGCCGAGGGGTTGCTG‑CAGGCCTGTTGTAGGAGCGGGTTCACCCGCGAAGCAGGCAACGCGGAACATGGCACCGGCTGCGCCGGTGTTCGCGGGTGAACCCGcccc                                                                     >  2:112391/1‑148 (MQ=255)                                                                                 cAGGCGACTTCCAAAGACATGAGCGGGCATCTTAGCGCAAGCCGAGGGGTTGCTG‑CAGGCCTGTTGTAGGAGCGGGTTCACCCGCGAAGCAGGCAACGCGGAACATGGCACCGGCTGCGCCGGTGTTCGCGGGTGAACCCGCCCCTAc                                                                  <  4:34931/148‑1 (MQ=255)                                                                                  aaccggcgcagcttcaacagtgatctcgaccagacgcgcctgatcgtcagctatccgctgaccTTGTAGGAGCGGGTTCACCCGCGAAGCAGGCAACGCGGAACATGGCACCGGCTGCGCCGGTGTTCGCGGGTGAACCCGCCCCTAc                                                                  <  7:132668‑M1/85‑1 (MQ=255)                                                                                       gcgcagcttcaacagtgatctcgaccagacgcgcctgatcgtcagctatccgctgaccTTGTAGGAGCGGGTTCACCCGCGAAGCAGGCAACGCGGAACATGGCACCGGCTGCGCCGGTGTTCGCGGGTGAACCCGCCCCTACAAGGTc                                                            >  8:132668‑M1/59‑149 (MQ=255)                                                                                             aaaGACATGAGCGGGCATCTTAGCGCAAGCCGAGGGGTTGCTG‑CAGGCCTGTTGTAGGAGCGGGTTCACCCGCGAAGCAGGCAACGCGGAACATGGCACCGGCTGCGCCGGTGTTCGCGGGTGAACCCGCCCCTACAAGGTCAGCGGAt                                                     <  7:291976/149‑1 (MQ=255)                                                                                                   aagAGCGGGCATCTTAGCGCAAGCCGAGGGGTTGCTG‑CAGGCCTGTTGTAGGAGCGGGTTCACCCGCGAAGCAGGCAACGCGGAACATGGCACCGGCTGCGCCg                                                                                            >  4:314703/3‑104 (MQ=255)                                                                                                   aagAGCGGGCATCTTAGCGCAAGCCGAGGGGTTGCTG‑CAGGCCTGTTGTAGGAGCGGGTTCACCCGCGAAGCAGGCAACGCGGAACATGGCACCGGCTGCGCCg                                                                                            <  3:314703/102‑1 (MQ=255)                                                                                                        cGGGCAGCTTAGCGCAAGCCGAGGGGTTGGTG‑CAGGCGTGTTGTAGGAGCGGGTTCACCCGCGAAGCAGGCAACGCGGAACATGGCACCCGCTGCGCCGTTGTTCGCGGGTGAACCCGCCCCTACAAGGTCAGCGGATAGCTGACGATc                                          <  1:168602/149‑1 (MQ=38)                                                                                                         gggCATCTTAGCGCAAGCCGAGGGGTTGCTG‑CAGGCCTGTTGTAGGAGCGGGTTCACCCGCGAAGCAGGCAACGCGGAACATGGCACCGGCTGCGCCGGTGTTCGCGGGTGAACCCGCCCCTACAAGGTCAGCGGATAGCTGACGAt                                           >  7:96929/1‑147 (MQ=255)                                                                                                                  aGCGCAAGCCGAGGGGTTGCTG‑CAGGCCTGTTGTAGGAGCGGGTTCACCCGCGAAGCAGGCAACGCGGAACATGGCACCGGCTGCGCCGGTGTTCGCGGGTGAACCCGCCCCTACAAGGTCAGCGGATAGCTGACGATCAGGCGCGTCt                                >  6:105632/1‑149 (MQ=255)                                                                                                                   gcgcAAGCCGAGGGGTTGCTG‑CAGGCCTGTTGTAGGAGCGGGTTCACCCGCGAAGCAGGCAACGCGGAACATGGCACCGGCTGCGCCGGTGTTCGCGGGTGAACCCGCCCCTACAAGGTCAGCGGATAGCTGACGATCAGGCGCGTCTg                               <  2:197160/149‑1 (MQ=255)                                                                                                                    cgcAAGCCGAGGGGTTGCTG‑CAGGCCTGTTGTAGGAGCGGGTTCACCCGCGAAGCAGGCAACGCGGAACATGGCACCGGCTGCGCCGGTGTTCGCGGGTGAACCCGCCCCTACAAGGTCAGCGGATAGCTGACGATCAGGCGCGTCTgg                              >  4:268287/1‑149 (MQ=255)                                                                                                                    cgcAAGCCGAGGGGTTGCTG‑CAGGCCTGTTGTAGGAGCGGGTTCACCCGCGAAGCAGGCAACGCGGAACATGGCACCGGCTGCGCCGGTGTTCGCGGGTGAACCCGCCCCTACAAGGTCAGCGGATAGCTGACGATCAGGCGCGTCTg                               <  8:96929/148‑1 (MQ=255)                                                                                                                                      tg‑cAGGCCTGTTGTAGGAGCGGGTTCACCCGCGAAGCAGGCAACGCGGAACATGGCACCGGCTGCGCCGGTGTTCGCGGGTGAACCCGCCCCTACAAGGTCAGCGGATAGCTGACGATCAGGCGCGTCTGGTCGAGATCACTGTTGAAg            >  5:251980/1‑149 (MQ=255)                                                                                                                                            gCCTGTTGTAGGAGCGGGTTCACCCGCGAAGCAGGCAACGCGGAACATGGCACCGGCTGCGCCGGTGTTCGCGGGTGAACCCGCCCCTACAAGGTCAGCGGATAGCTGACGATCAGGCGCGTCTGGTCGAGATCACTGTTGAAGCTgcg       >  4:141577/1‑149 (MQ=255)                                                                                                                                            gCCTGTTGTAGGAGCGGGTTCACCCGCGAAGCAGGCAACGCGGAACATGGCACCGGCTGCGCCGGTGTTCGCGGGTGAACCCGCCCCTACAAGGTCAGCGGATAGCTGACGATCAGGCGCGTCTGGTCGAGATCACTGTTGAAGCTgc        <  1:315696/148‑1 (MQ=255)                                                                                                                                                 TTGTAGGAGCGGGTTCACCCGCGAAGCAGGCAACGCGGAACATGGCACCGGCTGCGCCGGTGTTCGCGGGTGAACCCGCCCCTACAAGGTCAGCGGATAGCTGACGATCAGGCGCGTCTGGTCGAGATCACTGTTGAAGCTGCGCCGGt  >  5:105632‑M1/1‑149 (MQ=255)                                                                                                                                                 |                                                                                                                                                     AGCGCTCGCCGGCCGCCAACTCGCCTGAAGCGATCATCTTGCGCAACGCAACCAGCACCATCTGACCGGGTTTGCTCATCCAGGCGACTTCCAAAGACATGAGCGGGCATCTTAGCGCAAGCCGAGGGGTTGCTG‑CAGGCCTGTTGTAGGAGCGGGTTCACCCGCGAAGCAGGCAACGCGGAACATGGCACCGGCTGCGCCGGTGTTCGCGGGTGAACCCGCCCCTACAAGGTCAGCGGATAGCTGACGATCAGGCGCGTCTGGTCGAGATCACTGTTGAAGCTGCGCCGGT  >  NC_002947/4266380‑4266671

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.