New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	4266523 =	29 (0.560)	8 (0.160)	6/252	NT	23.0%	intergenic (‑65/+81)	PP_3738/galP‑IV	transcriptional regulator VanR/porin‑like protein
	?	NC_002947	4266610 =	26 (0.530)					coding (1248/1254 nt)	galP‑IV	porin‑like protein

GACTTCCAAAGACATGAGCGGGCATCTTAGCGCAAGCCGAGGGGTTGCTGCAGGCCTGTTGTAGGAGCGGGTTCACCCGCGAAGCAGGCAACGCGGAACATGGCACCGGCTGCGCCGGTGTTCGCGGGTGAACCCGCCCCTACAAGGTCAGCGGATAGCTGACGATCAGGCGCGTCTGGTCGAGATCACTGTTGAAGCTGCGCCGGTTGGTCGCGTTGTTCAGCCGGATGTTGAGGTTCTTCAAAGCCCCGCTCTGGAAGGTGTAGTTCACCTCGGCATCGCGCTCCC  >  NC_002947/4266465‑4266752                                                                                                                                                  |                                                                                                                                               gcgcagcttcaacagtgatctcgaccagacgcgcctgatcgtcagctatccgctgaccTTGTAGGAGCGGGTTCACCCGCGAAGCAGGCAACGCGGAACATGGCACCGGCTGCGCCGGTGTTCGCGGGTGAACCCGCCCCTACAAGGTc                                                                                                                                             >  8:132668‑M1/59‑149 (MQ=255)        aaaGACATGAGCGGGCATCTTAGCGCAAGCCGAGGGGTTGCTGCAGGCCTGTTGTAGGAGCGGGTTCACCCGCGAAGCAGGCAACGCGGAACATGGCACCGGCTGCGCCGGTGTTCGCGGGTGAACCCGCCCCTACAAGGTCAGCGGAt                                                                                                                                      <  7:291976/149‑1 (MQ=255)                   cGGGCAGCTTAGCGCAAGCCGAGGGGTTGGTGCAGGCGTGTTGTAGGAGCGGGTTCACCCGCGAAGCAGGCAACGCGGAACATGGCACCCGCTGCGCCGTTGTTCGCGGGTGAACCCGCCCCTACAAGGTCAGCGGATAGCTGACGATc                                                                                                                           <  1:168602/149‑1 (MQ=38)                    gggCATCTTAGCGCAAGCCGAGGGGTTGCTGCAGGCCTGTTGTAGGAGCGGGTTCACCCGCGAAGCAGGCAACGCGGAACATGGCACCGGCTGCGCCGGTGTTCGCGGGTGAACCCGCCCCTACAAGGTCAGCGGATAGCTGACGAt                                                                                                                            >  7:96929/1‑147 (MQ=255)                             aGCGCAAGCCGAGGGGTTGCTGCAGGCCTGTTGTAGGAGCGGGTTCACCCGCGAAGCAGGCAACGCGGAACATGGCACCGGCTGCGCCGGTGTTCGCGGGTGAACCCGCCCCTACAAGGTCAGCGGATAGCTGACGATCAGGCGCGTCt                                                                                                                 >  6:105632/1‑149 (MQ=255)                              gcgcAAGCCGAGGGGTTGCTGCAGGCCTGTTGTAGGAGCGGGTTCACCCGCGAAGCAGGCAACGCGGAACATGGCACCGGCTGCGCCGGTGTTCGCGGGTGAACCCGCCCCTACAAGGTCAGCGGATAGCTGACGATCAGGCGCGTCTg                                                                                                                <  2:197160/149‑1 (MQ=255)                               cgcAAGCCGAGGGGTTGCTGCAGGCCTGTTGTAGGAGCGGGTTCACCCGCGAAGCAGGCAACGCGGAACATGGCACCGGCTGCGCCGGTGTTCGCGGGTGAACCCGCCCCTACAAGGTCAGCGGATAGCTGACGATCAGGCGCGTCTgg                                                                                                               >  4:268287/1‑149 (MQ=255)                               cgcAAGCCGAGGGGTTGCTGCAGGCCTGTTGTAGGAGCGGGTTCACCCGCGAAGCAGGCAACGCGGAACATGGCACCGGCTGCGCCGGTGTTCGCGGGTGAACCCGCCCCTACAAGGTCAGCGGATAGCTGACGATCAGGCGCGTCTg                                                                                                                <  8:96929/148‑1 (MQ=255)                                                 tgcAGGCCTGTTGTAGGAGCGGGTTCACCCGCGAAGCAGGCAACGCGGAACATGGCACCGGCTGCGCCGGTGTTCGCGGGTGAACCCGCCCCTACAAGGTCAGCGGATAGCTGACGATCAGGCGCGTCTGGTCGAGATCACTGTTGAAg                                                                                             >  5:251980/1‑149 (MQ=255)                                                      gCCTGTTGTAGGAGCGGGTTCACCCGCGAAGCAGGCAACGCGGAACATGGCACCGGCTGCGCCGGTGTTCGCGGGTGAACCCGCCCCTACAAGGTCAGCGGATAGCTGACGATCAGGCGCGTCTGGTCGAGATCACTGTTGAAGCTgcg                                                                                        >  4:141577/1‑149 (MQ=255)                                                      gCCTGTTGTAGGAGCGGGTTCACCCGCGAAGCAGGCAACGCGGAACATGGCACCGGCTGCGCCGGTGTTCGCGGGTGAACCCGCCCCTACAAGGTCAGCGGATAGCTGACGATCAGGCGCGTCTGGTCGAGATCACTGTTGAAGCTgc                                                                                         <  1:315696/148‑1 (MQ=255)                                                       gaccttgtaggggcgggttcacccgcgaacaccggcgcagccggtgccatgttccgcgttgcctgcttcgcgggtgaacccgctcctacaaGGTCAGCGGATAGCTGACGATCAGGCGCGTCTGGTCGAGATCACTGTTGAAGCTgcgc                                                                                       >  8:132668‑M2/92‑149 (MQ=255)                                                           TTGTAGGAGCGGGTTCACCCGCGAAGCAGGCAACGCGGAACATGGCACCGGCTGCGCCGGTGTTCGCGGGTGAACCCGCCCCTACAAGGTCAGCGGATAGCTGACGATCAGGCGCGTCTGGTCGAGATCACTGTTGAAGCTGCGCCGGt                                                                                   >  5:105632‑M1/1‑149 (MQ=255)                                                             gtaggggcgggttcacccgcgaacaccggcgcagccggtgccatgttccgcgttgcctgcttcgcgggtgaacccgctcctacaaGGTCAGCGGATAGCTGACGATCAGGCGCGTCTGGTCGAGATCACTGTTGAAGCTGCGCCGGtt                                                                                  <  7:132668‑M2/63‑1 (MQ=255)                                                                 GAGCGGGTTCACCCGCGAAGCAGGCAACGCGGAACATGGCACCGGCTGCGCCGGTGTTCGCGGGTGAACCCGCCCCTACAAGGTCAGCGGATAGCTGACGATCAGGCGCGTCTGGTCGAGATCACTGTTGAAGCTGCGCCGGTTGGTCg                                                                             <  7:190696‑M1/149‑1 (MQ=255)                                                                   gCGGGTTCACCCGCGAAGCAGGCAACGCGGAACATGGCACCGGCTGCGCCGGTGTTCGCGGGTGAACCCGCCCCTACAAGGTCAGCGGATAGCTGACGATCAGGCGCGTCTGGTCGAGATCACTGTTGAAGCTGCGCCGGTTGGTcgcg                                                                           <  6:251980/149‑1 (MQ=255)                                                                   gCGGGTTCACCCGCGAAGCAGGCAACGCGGAACATGGCACCGGCTGCGCCGGTGTTCGCGGGTGAACCCGCCCCTACAAGGTCAGCGGATAGCTGACGATCAGGCGCGTCTGGTCGAGATCACTGTTGAAGCTGCGCCGGTTGGTcgcg                                                                           >  5:79615/1‑149 (MQ=255)                                                                       gTTCACCCGCGAAGCAGGCAACGCGGAACATGGCACCGGCTGCGCCGGTGTTCGCGGGTGAACCCGCCCCTACAAGGTCAGCGGATAGCTGACGATCAGGCGCGTCTGGTCGAGATCACTGTTGAAGCTGCGCCGGTTGGTCGCgttgt                                                                       >  7:76912/1‑149 (MQ=255)                                                                          cacccgcgaacaccggcgcagccggtgccatgttccgcgttgcctgcttcgcgggtgaacccgctcctacaaGGTCAGCGGATAGCTGACGATCAGGCGCGTCTGGTCGAGATCACTGTTGAAGCTGCGCCGGTTGGTCGCgttgtt                                                                      >  3:42419‑M2/73‑147 (MQ=255)                                                                             ccgcgaacaccggcgcagcgggtgcgatgttccgcgttgcctgcttcgcgggtgaacccgctcctagtaGGTCCGCGGATAGCTGACGATCAGGCGCGTCTGGTCGAGATCAGTGTTGAAGCTGCGCCGGTTGGTCGCgttg                                                                        <  5:223808‑M2/73‑1 (MQ=255)                                                                             ccgcgaacaccggcgcagccggtgccatgttccgcgttgcctgcttcgcgggtgaacccgctcctacaaGGTCAGCGGATAGCTGACGATCAGGCGCGTCTGGTCGAGATCACTGTTGAAGCTGCGCCGGTTGGTCGCGTTGTTCAGcc                                                                 >  1:166239‑M2/70‑149 (MQ=255)                                                                             ccgcgaacaccggcgcagccggtgccatgttccgcgttgcctgcttcgcgggtgaacccgctcctacaaGGTCAGCGGATAGCTGACGATCAGGCGCGTCTGGTCGAGATCACTGTTGAAGCTCCGCCGGTGGTGCGCgttg                                                                        >  6:223808‑M2/70‑142 (MQ=255)                                                                             ccgcgaacaccggcgcagccggtgccatgttccgcgttgcctgcttcgcgggtgaacccgcccctacaaGGTCAGCGGATAGCTGACGATCAGGCGCGTCTGGTCGAGATCACTGTTGAAGCTGCGCCGGTTGGTCGCGTTGTTCAGcc                                                                 >  5:248097‑M2/70‑149 (MQ=255)                                                                             ccGCGAAGCAGGCAACGCGGAACATGGCACCGGCTGCGCCGGTGTTCGCGGGTGAACCCGCCCCTACAAGGTCAGCGGATAGCTGACGATCAGGCGCGTCTGGTCGAGATCACTGTTGAAGCTGCGCCGGTTGGTcgc                                                                            <  5:39384/138‑1 (MQ=255)                                                                             ccGCGAAGCAGGCAACGCGGAACATGGCACCGGCTGCGCCGGTGTTCGCGGGTGAACCCGCCCCTACAAGGTCAGCGGATAGCTGACGATCAGGCGCGTCTGGTCGAGATCACTGTTGAAGCTGCGCCGGTTGGTcgc                                                                            >  6:39384/1‑138 (MQ=255)                                                                             ccGCGAAGCAGGCAACGCGGAACATCGCACCGGCTGCGCCGGTGTTCTCGGGTGAACCCGCCACTACAAGGTCAGCGGATAGCTGACGATAATGCGCGTCAGCTCGAGATCACTGTTGAAGCTGCGCCGGTTGGTAGCGTTGTTCATcc                                                                 >  4:267531/1‑149 (MQ=255)                                                                                   aGCAGGCAACGCGGAACATGGCACCGGCTGCGCCGGTGTTCGCGGGTGAACCCGCCCCTACAAGGTCAGCGGATAGCTGACGATCAGGCGCGTCTGGTCGAGATCACTGTTGAAGCTGCGCCGGTTGGTCGCGTTGTTCAGCCGGATGt                                                           <  3:268287/149‑1 (MQ=255)                                                                                             gcgGAACATGGCACCGGCTGCGCCGGTGTTCGCGGGTGAACCCGCCCCTACAAGGTCAGCGGATAGCTGACGATCAGGCGCGTCTGGTCGAGATCACTGTTGAAGCTGCGCCGGTTGGTCGCGTTGTTCAGCCGGATGTTGAGGttctt                                                 <  7:63647/149‑1 (MQ=255)                                                                                                gAACATGGCACCGGCTGCGCCGGTGTTCGCGGGTGAACCCGCCCCTACAAGGTCAGCGGATAGCTGACGATCAGGCGCGTCTGGTCGAGATCACTGTTGAAGCTGCGCCGGTTGGTCGCGTTGTTCAGCCGGATGTTGAGGTTCTTCa                                               >  3:145279/1‑148 (MQ=255)                                                                                                   cATGGCACCGGCTGCGCCGGTGTTCGCGGGTGAACCCGCCCCTACAAGGTCAGCGGATAGCTGACGATCAGGCGCGTCTGGTCGAGATCACTGTTGAAGCTGCGCCGGTTGGTCGCGTTGTTCAGCCGGATGTTGAGGTTCTTCAAAGc                                           >  6:54989/1‑149 (MQ=255)                                                                                                                        cttCGCGGGTGAACCCGCCCCTACAAGGTCAGCGGATAGCTGACGATCAGGCGCGTCTGGTCGAGATCACTGTTGAAGCTGCGCCGGTTGGTCGCGTTGTTCAGCCGGATGTTGAGGTTCTTCAAAGCCCCGCTCTGGAAGGTGTAg                        <  6:248097/146‑1 (MQ=255)                                                                                                                           cgcgGGTGAACCCGCCCCTACAAGGTCAGCGGATAGCTGACGATCAGGCGCGTCTGGTCGAGATCACTGTTGAAGCTGCGCCGGTTGGTCGCGTTGTTCAGCCGGATGTTg                                                         >  6:55594/1‑111 (MQ=255)                                                                                                                           cgcgGGTGAACCCGCCCCTACAAGGTCAGCGGATAGCTGACGATCAGGCGCGTCTGGTCGAGATCACTGTTGAAGCTGCGCCGGTTGGTCGCGTTGTTCAGCCGGATGTTg                                                         <  5:55594/111‑1 (MQ=255)                                                                                                                           cgcgGGTGAACCCGCCCCTACAAGGTCAGCGGATAGCTGACGATCAGGCGCGTCTGGTCGAGATCACTGTTGAAGCTGCGCCGGTTGGTCGCGTTGTTCAGCCGGATGTTGAGGTTCTTCAAAGCCCCGCTCTGGAAGGTGTAGTTCAc                   >  2:109820/1‑149 (MQ=255)                                                                                                                              gggtgaacccgctcctacaaGGTCAGCGGATAGCTGACGATCAGGCGCGTCTGGTCGAGATCACTGTTGAAGCTGCGCCGGTTGGTCGCGTTGTTCAGCCGGATGTTGAGGTTCTTCAAAGCCCCGCTCTGGAAGGTGTAGTTCACCTc                <  4:42419‑M2/129‑1 (MQ=255)                                                                                                                                  gAACCCCCCCCTACAAGGTCAGCGGATAGCTGACGATCAGGCGAGTCTGGTCGAGATCACTGTTTAAGCTGCGCAGGGTGGTCGCGTTGTTCAGCCGGATGTGGAGGTTCGTCAAAGCCCCTCTATGGAAGGTGTAGTTCACGTCAGCa            >  8:105559/1‑149 (MQ=255)                                                                                                                                    aCCCGCCCCTACAAGGTCAGCGGATAGCTGACGATCAGGCGCGTCTGGTCGAGATCACTGTTGAAGCTGCGCCGGTTGGTCGCGTTGTTCAGCCGGATGTTGAGGTTCTTCAAAGCCCCGCTCTGGAAGGTGTAGTTCACCTCGGCAt           <  6:79615/148‑1 (MQ=255)                                                                                                                                      ccGCCCCTACAAGGTCAGCGGATAGCTGACGATCAGGCGCGTCTGGTCGAGATCACTGTTGAAGCTGCGCCGGTTGGTCGCGTTGTTCAGCCGGATGTTGa                                                        >  3:144757/1‑101 (MQ=255)                                                                                                                                      ccGCCCCTACAAGGTCAGCGGATAGCTGACGATCAGGCGCGTCTGGTCGAGATCACTGTTGAAGCTGCGCCGGTTGGTCGCGTTGTTCAGCCGGATGTTGa                                                        <  4:144757/101‑1 (MQ=255)                                                                                                                                            ctacaaGGTCAGCGGATAGCTGACGATCAGGCGCGTCTGGTCGAGATCACTGTTGAAGCTGCGCCGGTTGGTCGCGTTGTTCAGCCGGATGTTGAGGTTCTTCAAAGCCCCGCTCTGGAAGGTGTAGTTCACCTCGGCATCGCGCTccc  <  8:76912‑M2/143‑1 (MQ=255)                                                                                                                                                  |                                                                                                                                               GACTTCCAAAGACATGAGCGGGCATCTTAGCGCAAGCCGAGGGGTTGCTGCAGGCCTGTTGTAGGAGCGGGTTCACCCGCGAAGCAGGCAACGCGGAACATGGCACCGGCTGCGCCGGTGTTCGCGGGTGAACCCGCCCCTACAAGGTCAGCGGATAGCTGACGATCAGGCGCGTCTGGTCGAGATCACTGTTGAAGCTGCGCCGGTTGGTCGCGTTGTTCAGCCGGATGTTGAGGTTCTTCAAAGCCCCGCTCTGGAAGGTGTAGTTCACCTCGGCATCGCGCTCCC  >  NC_002947/4266465‑4266752

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.