| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_002947 | = 4294597 | 42 (0.810) | 6 (0.120) | 6/258 | NT | 13.4% | coding (776/1302 nt) | opdN | outer‑membrane porin D |
| ? | NC_002947 | = 4294635 | 37 (0.730) | coding (738/1302 nt) | opdN | outer‑membrane porin D | |||||
CATGCGCTGCCAGCCGGCGCTGAGCTTGTGGCCACCGAGGCTGTAGCCAAGCATGCCGCTGAAGGCGCGATGGTCGATTTCGCCCGCACGGGCATTGCCGATGTCATCACTCTTGATCAGGCGCATGTCAGCCGACAGGCTGCCCACCG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_002947/4294449‑4294597‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑accgCCAGCACTTCCTCGGCCTGGTGGCCAGTCAGCCGCTGCCGGTGGGCAGCC < NC_002947/4294635‑4294586 CATGCGCTGCCAGCCGGCGCTGAGCTTGTGGCCACCGAGGCTGTAGCCAAGCATGCCGCTGAAGGCGCGATGGTCGATTTCGCCCGCACGGGCATTGCCGATGTCATCACTCTTGATCAGGCGCATGTCAGCCGACAGGCTGCCCACC < 2:310005/148‑1CATGCGCTGCCAGCCGGCGCTGAGCTTGTGGCCACCGAGGCTGTAGCCAAGCATGCCGCTGAAGGCGCGATGGTCGATTTCGCCCGCACGGGCATTGCCGATGTCATCACTCTTGATCAGGCGCATGTCAGCCGACAGGCTGCCCACC < 6:204669/148‑1 CACCGAGGCTGTAGCCAAGCATGCCGCTGAAGGCGCGATGGTCGATTTCGCCCGCACGGGCATTGCCGATGTCATCACTCTTGATCAGGCGCATGTCAGCCGACAGGCTGCCTACCGCCAGCACTTCCTCGGCCTGGTGGCCAGTCAGC > 8:139926/1‑149 GCATGCCGCTGAAGGCGCGATGGTCGATTTCGCCCGCACGGGCATTGCCGATGTCATCACTCTTGATCAGGCGCATGTCAGCCGACAGGCTGCCTACCGCCAGCACTTCCTCGGCCTGGTGGCCAGTCAGCCGCTGCCGGTGGGCAGCC < 7:139926/149‑1 GCATGCCGCTGAAGGCGCGATGGTCGATTTCGCCCGCACGGGCATTGCCGATGTCATCACTCTTGATCAGGCGCATGTCAGCCGACAGGCTGCCCACCGCCAGCACTTCCTCGGCCTGGTGGCCAGTCAGCCGCTGCCGGT < 3:160360/141‑1 GCATGCCGCTGAAGGCGCGATGGTCGATTTCGCCCGCACGGGCATTGCCGATGTCATCACTCTTGATCAGGCGCATGTCAGCCGACAGGCTGCCCACCGCCAGCACTTCCTCGGCCTGGTGGCCAGTCAGCCGCTGCCGGT > 4:160360/1‑141 CTGAAGGCGCGATGGTCGATTTCGCCCGCACGGGCATTGCCGATGTCATCACTCTTGATCAGGCGCATGTCAGCCGACAGGCTGCCCACCGCCAGCACTTCCTCGGCCTGGTGGCCAGTCAGCCGCTGCCG > 7:19547/1‑131 CTGAAGGCGCGATGGTCGATTTCGCCCGCACGGGCATTGCCGATGTCATCACTCTTGATCAGGCGCATGTCAGCCGACAGGCTGCCCACCGCCAGCACTTCCTCGGCCTGGTGGCCAGTCAGCCGCTGCCG < 8:19547/131‑1 CATGCGCTGCCAGCCGGCGCTGAGCTTGTGGCCACCGAGGCTGTAGCCAAGCATGCCGCTGAAGGCGCGATGGTCGATTTCGCCCGCACGGGCATTGCCGATGTCATCACTCTTGATCAGGCGCATGTCAGCCGACAGGCTGCCCACCG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_002947/4294449‑4294597‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑accgCCAGCACTTCCTCGGCCTGGTGGCCAGTCAGCCGCTGCCGGTGGGCAGCC < NC_002947/4294635‑4294586 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |