New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 4294597	42 (0.810)	6 (0.120)	6/258	NT	13.4%	coding (776/1302 nt)	opdN	outer‑membrane porin D
	?	NC_002947	= 4294635	37 (0.730)					coding (738/1302 nt)	opdN	outer‑membrane porin D

GCTGTAGCCAAGCATGCCGCTGAAGGCGCGATGGTCGATTTCGCCCGCACGGGCATTGCCGATGTCATCACTCTTGATCAGGCGCATGTCAGCCGACAGGCTGCCCACCGGCAGCGGCTGACTGGCCACCAGGCCGAGGAAGTGCTGGCGGTAGATATTCTCCA‑GCTTGGCCACTTGGTACTGGGCGCTGAAACGCTCGTTGAAACGGTAGTCGACACCGGCCAGGTCGAAGTGGTCGGCTTCGGTATCGCAGGCATAACGCTTGTTCTTGCAGTGCACGCGGATGTCCTGGCGGT  >  NC_002947/4294488‑4294783                                                                                                                                                    |                                                                                                                                                      gCTGTAGCCAAGCATGCCGCTGAAGGCGCGATGGTCGATTTCGCCCGCACGGGCATTGCCTATGTCATCACTCTTGATCAGGCGCATGTCAGCCGACAGGCTGCCCACCGGCAGCGGCTGACTTGCCACCAGGCCGAGGAAGTGCTgg                                                                                                                                                       <  2:74083/148‑1 (MQ=255)             cATGCCGCTGAAGGCGCGATGGTCGATTTCGCCCGCACGGGCATTGCCGATGTCATCACTCTTGATCAGGCGCATGTCAGCCGACAGGCTGCCCACCGGCAGCGGCTGACTGGCCACCAGGCCGAGGAAGTGCTGGCGGTAGATATtct                                                                                                                                          <  2:105092/149‑1 (MQ=255)                 ccGCTGAAGGCGCGATGGTCGATTTCGCCCGCACGGGCATTGCCGATGTCATCACTCTTGATCAGGCGCATGTCAGCCGACAGGCTGCCCACCGGCAGCGGCTGACTGGCCACCAGGCCGAGGAAGTGCTGGCGGTAGATATTCTCCa                                                                                                                                       <  8:129048/148‑1 (MQ=255)                  cGCTGAAGGCGCGATGGTCGATTTCGCCCGCACGGGCATTGCCGATGTCATCACTCTTGATCAGGCGCATGTCAGCCGACAGGCTGCCCACCGGCAGCGGCTGACTGGCCACCAGGCCGAGGAAGTGCTGGCGGTAGATATTCTCCA‑Gc                                                                                                                                    >  1:99102/1‑149 (MQ=255)                   gCTGAAGGCGCGATGGTCGATTTCGCCCGCACGGGCATTGCCGATGTCATCACTCTTGATCAGGCGCATGTCAGCCGACAGGCTGCCCACCGGCAGCGGCTGACTGGCCACCAGGCCGAGGAAGTGCTGGCGGTAGATATtctc                                                                                                                                         <  8:123672/144‑1 (MQ=255)                   gCTGAAGGCGCGATGGTCGATTTCGCCCGCACGGGCATTGCCGATGTCATCACTCTTGATCAGGCGCATGTCAGCCGACAGGCTGCCCACCGGCAGCGGCTGACTGGCCACCAGGCCGAGGAAGTGCTGGCGGTAGATATtctc                                                                                                                                         >  7:123672/1‑144 (MQ=255)                                   tCGATTTCGCCCGCACGGGCATTGCCGATGTCATCACTCTTGATCAGGCGCATGTCAGCCGACAGGCTGCCCACCGGCAGCGGCTGACTGGCCACCAGGCCGAGGAAGTGCTGGCGGTAGATATTCTCCA‑GCTTGGCCACtt                                                                                                                          >  5:58807/1‑142 (MQ=255)                                   tCGATTTCGCCCGCACGGGCATTGCCGATGTCATCACTCTTGATCAGGCGCATGTCAGCCGACAGGCTGCCCACCGGCAGCGGCTGACTGGCCACCAGGCCGAGGAAGTGCTGGCGGTAGATATTCTCCA‑GCTTGGCCACtt                                                                                                                          <  6:58807/142‑1 (MQ=255)                                   tCGATTTCGCCCGCACGGGCATTGCCGATGTCATCACTCTTGATCAGGCGCATGTCAGCCGACAGGCTGCCCACCGGCAGCGGCTGACTGGCCACCAGGCCGAGGAAGTGCTGGCGGTAGATATTCTCCA‑GCTTGGCCACTTGGTACTg                                                                                                                   >  2:25301/1‑149 (MQ=255)                                     gATTTCGCCCGCACGGGCATTGCCGATGTCATCACTCTTGATCAGGCGCATGTCAGCCGACAGGCTGCCCACCGGCAGCGGCTGACTGGCCACCAGGCCGAGGAAGTGCTGGCGGTAGATATTCTCCA‑GCTTGGCCACTTGGTACTgg                                                                                                                  <  2:311016/148‑1 (MQ=255)                                      aTTTCGCCCGCACGGGCATTGCCGATGTCATCACTCTTGATCAGGCGCATGTCAGCCGACAGGCTGCCCACCGGCAGCGGCTGACTGGCCACCAGGCCGAGGAAGTGCTGGCGGTAGATATTCTCCA‑GCTTGGCCACTTGGTACTGGgc                                                                                                                >  8:229392/1‑149 (MQ=255)                                                           ccGATGTCATCACTCTTGATCAGGCGCATGTCAGCCGACAGGCTGCCCACCGGCAGCGGCTGACTGGCCACCAGGCCGAGGAAGTGCTGGCGGTAGATATTCTCCA‑GCTTGGCCACTTGGTACTGGGCGCTGAAACGCTCGTTGAAACg                                                                                           <  7:229392/149‑1 (MQ=255)                                                            cGATGTCATCACTCTTGATCAGGCGCATGTCAGCCGACAGGCTGCCCACCGGCAGCGGCTGACTGGCCACCAGGCCGAGGAAGTGCTGGCGGTAGATATTCTCCA‑GCTTGGCCACTTGGTACTGGGCGCTGAAACGCTCGTTGAAACgg                                                                                          <  4:291800/149‑1 (MQ=255)                                                                   atcaCTCTTGATCAGGCGCATGTCAGCCGACAGGCTGCCCACCGGCAGCGGCTGACTGGCCACCAGGCCGAGGAAGTGCTGGCGGTAGATATTCTCCA‑GCTTGGCCACTTGGTACTGGGCGCTGAAACGCTCGTTGAAACGGTAGTCGa                                                                                   >  4:249549/1‑149 (MQ=255)                                                                        tctTGATCAGGCGCATGTCAGCCGACAGGCTGCCCACCGGCAGCGGCTGACTGGCCACCAGGCCGAGGAAGTGCTGGCGGTAGATATTCTCCA‑GCTTGGCCACTTGGTACTGGGCGCTGAAACGCTCGTTGAAACgg                                                                                          <  6:102781/137‑1 (MQ=255)                                                                        tctTGATCAGGCGCATGTCAGCCGACAGGCTGCCCACCGGCAGCGGCTGACTGGCCACCAGGCCGAGGAAGTGCTGGCGGTAGATATTCTCCA‑GCTTGGCCACTTGGTACTGGGCGCTGAAACGCTCGTTGAAACgg                                                                                          >  5:102781/1‑137 (MQ=255)                                                                          ttGATCAGGCGCATGTCAGCCGACAGGCTGCCCACCGGCAGCGGCTGACTGGCCACCAGGCCGAGGAAGTGCTGGCGGTAGATATTCTCCA‑GCTTGGCCACTTGGTACTGGGCGCTGAAACGCTCGTTGAAACGGTAGTCGACACCg                                                                              <  5:205924/147‑1 (MQ=255)                                                                                   cgcATGTCAGCCGACAGGCTGCCCACCGGCAGCGACTGACTGGCCACCAGGTCGAGGAAGTGCTGGCGGTAGATATTCTCCA‑GCTTGGCCACTTGGTACTGGGCGCTGAAACGCTCGTTGAAACGGTAGTCGACACCGGCCAGGTCGaa                                                                   <  7:87684/149‑1 (MQ=255)                                                                                           aGCCGACAGGCTGCCCACCGGCAGCGGCTGACTGGCCACCAGGCCGAGGAAGTGCTGGCGGTAATTAATAGGCACCCTTGGCCCGTTGGTAGTGGCGCCGGAACCGTTCGTGGAACCGGTAGACGCCACCGGCCAGTGCGAGGTggcgg                                                            >  1:261299/1‑146 (MQ=255)                                                                                            gCCGACAGGCTGCCCACCGGCAGCGGCTGACTGGCCACCAGGCCGAGGAAGTGCTGGCGGTAGATATTCTCCA‑GCTTGGCCACTTGGTACTGGGCGCTGAAACGCGCGTTGAAACGGTAGTCGACACCGGCCAGGTCGAAGTGGTCGGc                                                          <  1:25301/149‑1 (MQ=255)                                                                                                   ggCTGCCCACCGGCAGCGGCTGACTGGCCACCAGGCCGAGGAAGTGCTGGcggtaggcagcctgtcggctgacatgcgcctgatcaagagtgatgacatcggcaatgcccgtgcgggcgaaatcgaccatcgcgccttcagcggcatgc                                                    <  7:139926‑M2/149‑100 (MQ=255)                                                                                                    gCTGCCCACCGGCAGCGGCTGACTGGCCACCAGGCCGAGGAAGTGCTGGCGGTAGATATTCTCCA‑GCTTGGCCACTTGGTACTGGGCGCTGAAACGCTCGTTGAAACGGTAGTCGACACCg                                                                              <  6:177189/121‑1 (MQ=255)                                                                                                      tGCCCACCGGCAGCGGCTGACTGGCCACCAGGCCGAGGAAGTGCTGGCGGTAGATATTCTCCA‑GCTTGGCCACTTGGTACTGGGCGCTGAAACGCTCGTTGAAACGGTAGTCGACACCGGcc                                                                           >  4:164632/1‑122 (MQ=255)                                                                                                      tGCCCACCGGCAGCGGCTGACTGGCCACCAGGCCGAGGAAGTGCTGGCGGTAGATATTCTCCA‑GCTTGGCCACTTGGTACTGGGCGCTGAAACGCTCGTTGAAACGGTAGTCGACACCGGcc                                                                           <  3:164632/122‑1 (MQ=255)                                                                                                        cccACCGGCAGCGGCTGACTGGCCACCAGGCCGAGGAAGTGCTGGCGGTAGATATTCTCCA‑GCTTGGCCACTTGGTACTGGGCGCTGAAACGCTCGTTGAAACGGTAGTCGACACCGGCCAGGTCGAAGTGGTCGGCTTCGGTATCg                                                >  5:71040/1‑147 (MQ=255)                                                                                                         ccACCGGCAGCGGCTGACTGGCCACCAGGCCGAGGAAGTGCTGGCGGTAGATATTCTCCA‑GCTTGGCCACTTGGTACTGGGCGCTGAAACGCTCGTTGAAACGGTAGTCGACACCGGCCAGGTCGAAGTGGTCGGCTTCGGTATCGCAg                                             >  2:61996/1‑149 (MQ=255)                                                                                                          cACCGGCAGCGGCTGACTGGCCACCAGGCCGAGGAAGTGCTGGCGGTAGATATTCTCCA‑GCTTGGCCACTTGGTACTGGGCGCTGAAACGCTCGTTGAAACGGTAGTCGACACCGGCCAGGTCGAAGTGGTCGGCTTCGGTATCGCAgg                                            >  1:187540/1‑149 (MQ=255)                                                                                                           aCCGGCAGCGGCTGACTGGCCACCAGGCCGAGGAAGTGCTGGcggtgggcagcctgtcggctgacatgcgcctgatcaagagtgatgacatcggcaatgcccgtgcgggcgaaatcgaccatcgcgccttcagcggcatgc                                                    >  4:160360‑M2/1‑42 (MQ=255)                                                                                                           aCCGGCAGCGGCTGACTGGCCACCAGGCCGAGGAAGTGCTGGcggtgggcagcctgtcggctgacatgcgcctgatcaagagtgatgacatcggcaatgcccgtgcgggcgaaatcgaccatcgcgccttcagcggcatgc                                                    <  3:160360‑M2/141‑100 (MQ=255)                                                                                                           aCCGGCAGCGGCTGACTGGCCACCAGGCCGAGGAAGTGCTGGCGGTAGATATTCTCCA‑GCTTGGCCACTTGGTACTGGGCGCTGAAACGCTCGTTGAAACGGTAGTCGACACCGGCCAGGTCGAAGTGGTCGGCTTCGGTATCGCAgg                                            >  5:242304/1‑148 (MQ=255)                                                                                                            ccGGCAGCGGCTGACTGGCCACCAGGCCGAGGAAGTGCTGGCGGTAGATATTCTCCA‑GCTTGGCCACTTGGTACTGGGCGCTGAAACGCTCGTTGAAACGGTAGTCGACACCGGCCAGGTCGAAGTGGTCGGCTTCGGTATCGCAGGCa                                          >  7:247788/1‑149 (MQ=255)                                                                                                             cGGCAGCGGCTGACTGGCCACCAGGCCGAGGAAGTGCTGGcggtgggcagcctgtcggctgacatgcgcctgatcaagagtgatgacatcggcaatgcccgtgcgggcgaaatcgaccatcgcgccttcag                                                            <  8:19547‑M2/131‑92 (MQ=255)                                                                                                             cGGCAGCGGCTGACTGGCCACCAGGCCGAGGAAGTGCTGGcggtgggcagcctgtcggctgacatgcgcctgatcaagagtgatgacatcggcaatgcccgtgcgggcgaaatcgaccatcgcgccttcag                                                            >  7:19547‑M2/1‑40 (MQ=255)                                                                                                                   cGGCTGACTGGCCACCAGGCCGAGGAAGTGCTGGCGGTAGATATTCTCCA‑GCTTGGCCACTTGGTACTGGGCGCTGAAACGCTCGTTGAAACGGTAGTCGACACCGGCCAGGTCGAAGTGGTCGGCTTCGGTATCGCAGGCATAACGCt                                   >  4:103565/1‑149 (MQ=255)                                                                                                                     gCTGACTGGCCACCAGGCCGAGGAAGTGCTGGcggtaggcagcctgtcggctgacatgcgcctgatcaagagtgatgacatcggcaatgcccgtgcgggcgaaatcgaccatcgcgccttcagcggcatgcttggctacagcctcggtg                                  >  8:139926‑M2/1‑32 (MQ=255)                                                                                                                     gCTGACTGGCCACCAGGCCGAGGAAGTGCTGGCGGTAGATATTCTCCA‑GCTTGGCCACTTGGTACTGGGCGCTGAAACGCTCGTTGAAACGGTAGTCGACACCGGCCAGGTCGAAGTGGTCGGCTTCGGTATCGCAGGCATAACGCTTg                                 <  3:150633/149‑1 (MQ=255)                                                                                                                      cTGACTGGCCACCAGGCCGAGGAAGTGCTGGCGGTAGATATTCTCCA‑GCTTGGCCACTTGGTACTGGGCGCTGAAACGCTCGTTGAAACGGTAGTCGACACCGGCCAGGTCGAAGTGGTCGGCTTCGGTATCGCAGGCATAACGCTTGt                                <  3:249549/149‑1 (MQ=255)                                                                                                                          cTGGCCACCAGGCCGAGGAAGTGCTGGCGGTAGATATTCTCCA‑GCTTGGCCACTTGGTACTGGGCGCTGAAACGCTCGTTGAAACGGTAGTCGACACCGGCCAGGTCGAAGTGGTCGGCTTCGGTATCGCAGGCATAACGCTTGTTCtt                            >  1:270633/1‑149 (MQ=255)                                                                                                                           tGGCCACCAGGCCGAGGAAGTGCTGGCGGTAGATATTCTCCA‑GCTTGGCCACTTGGTACTGGGCGCTGAAACGCTCGTTGAAACGGTAGTCGACACCGGCCAGGTCGAAGTGGTCGGCTTCGGTATCGCAGGCATAACGCTTGTTCTTg                           >  8:197193/1‑149 (MQ=255)                                                                                                                             gCCACCAGGCCGAGGAAGTGCTGGCGGTAGATATTCTCCA‑GCTTGGCCACTTGGTACTGGGCGCTGAAACGCTCGTTGAAACGGTAGTCGACACCGGCCAGGTCGAAGAGGTCGGCTTCGGTATCGCAGGCATAACGCTTGTTCTTGCa                         >  3:23838/1‑149 (MQ=255)                                                                                                                                accaGGCCGAGGAAGTGCTGGCGGTAGATATTCTCCA‑GCTTGGCCACTTGGTACTGGGCGCTGAAACGCTCGTTGAAACGGTAGTCGACACCGGCCAGGTCGAAGTGGTCGGCTTCGGTATCg                                                >  6:53196/1‑123 (MQ=255)                                                                                                                                accaGGCCGAGGAAGTGCTGGCGGTAGATATTCTCCA‑GCTTGGCCACTTGGTACTGGGCGCTGAAACGCTCGTTGAAACGGTAGTCGACACCGGCCAGGTCGAAGTGGTCGGCTTCGGTATCg                                                <  5:53196/123‑1 (MQ=255)                                                                                                                                         aGGAAGTGCTGGCGGTAGATATTCTCCA‑GCTTGGCCACTTGGTACTGGGCGCTGAAACGCTCGTTGAAACGGTAGTCGACACCGGCCAGGTCGAAGTGGTCGGCTTCGGTATCGCAGGCATAACGCTTGTTCTTGCAGTGCACGCGGAt             <  3:103565/149‑1 (MQ=255)                                                                                                                                            aaGTGCTGGCGGTAGATATTCTCCA‑GCTTGGCCACTTGGTACTGGGCGCTGAAACGCTCGTTGAAACGGTAGTCGACACCGGCCAGGTCGAAGTGGTCGGCTTCGGTATCGCAGGCATAACGCTTGTTCTTGCAGTGCACGCGGATGTc          <  3:313113/149‑1 (MQ=255)                                                                                                                                                gCTGGCGGTAGATATTCTCCA‑GCTTGGCCACTTGGTACTGGGCGCTGAAACGCTCGTTGAAACGGTAGTCGACACCGGCCAGGTCGAAGTGGTCGGCTTCGGTATCGCAGGCATAACGCTTGTTCTTGCAGTGCACGCGGATGTCCTg       <  8:247788/148‑1 (MQ=255)                                                                                                                                                 cTGGCGGTAGATATTCTCCA‑GCTTGGCCACTTGGTACTGGGCGCTGAAACGCTCGTTGAAACGGTAGTCGACACCGGCCAGGTCGAAGTGGTCGGCTTCGGTATCGCAGGCATAACGCTTGTTCTTGCAGTGCACGCGGATGTCCTGGc     >  3:229839/1‑149 (MQ=255)                                                                                                                                                 cTGGCGGTAGATATTCTCCA‑GCTTGGCCACTTGGTACTGGGCGCTGAAACGCTCGTTGAAACGGTAGTCGACACCGGCCAGGTCGAAGTGGTCGGCTTCGGTATCGCAGGCATAACGCTTGTTCTTGCAGTGCACGCGGATGTCCTGGc     >  4:225217/1‑149 (MQ=255)                                                                                                                                                   ggCGGTAGATATTCTCCA‑GCTTGGCCACTTGGTACTGGGCGCTGAAACGCTCGTTGAAACGGTAGTCGACACCGGCCAGGTCGAAGTGGTCGGCTTCGGTATCGCAGGCATAACGCTTGTTCTTGCAGTGCACGCGGATGTCCTGGcgg   >  3:40797/1‑149 (MQ=255)                                                                                                                                                    gCGGTAGATATTCTCCA‑GCTTGGCCACTTGGTACTGGGCGCTGAAACGCTCGTTGAAACGGTAGTCGACACCGGCCAGGGCGATGTCGTCGGCTTCGGTATCGCAGGCATAACGCTTCTTCTTGCAGTGCACGCGGATGTCCTGGcggt  >  2:40621/1‑149 (MQ=255)                                                                                                                                                    |                                                                                                                                                      GCTGTAGCCAAGCATGCCGCTGAAGGCGCGATGGTCGATTTCGCCCGCACGGGCATTGCCGATGTCATCACTCTTGATCAGGCGCATGTCAGCCGACAGGCTGCCCACCGGCAGCGGCTGACTGGCCACCAGGCCGAGGAAGTGCTGGCGGTAGATATTCTCCA‑GCTTGGCCACTTGGTACTGGGCGCTGAAACGCTCGTTGAAACGGTAGTCGACACCGGCCAGGTCGAAGTGGTCGGCTTCGGTATCGCAGGCATAACGCTTGTTCTTGCAGTGCACGCGGATGTCCTGGCGGT  >  NC_002947/4294488‑4294783

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.