New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 4294597	42 (0.810)	6 (0.120)	6/258	NT	13.4%	coding (776/1302 nt)	opdN	outer‑membrane porin D
	?	NC_002947	= 4294635	37 (0.730)					coding (738/1302 nt)	opdN	outer‑membrane porin D

CTGCCAGCCGGCGCTGAGCTTGTGGCCACCGAGGCTGTAGCCAAGCATGCCGCTGAAGGCGCGATGGTCGATTTCGCCCGCACGGGCATTGCCGATGTCATCACTCTTGATCAGGCGCATGTCAGCCGACAGGCTGCCCACCGGCAGCGGCTGACTGGCCACCAGGCCGAGGAAGTGCTGGCGGTAGATATTCTCCA‑GCTTGGCCACTTGGTACTGGGCGCTGAAACGCTCGTTGAAACGGTAGTCGACACCGGCCAGGTCGAAGTGGTCGGCTTCGGTATCGCAGGCA  >  NC_002947/4294455‑4294743                                                                                                                                               |                                                                                                                                                    cTGCCAGCCGGCGCTGAGCTTGTGGCCACCGAGGCTGTAGCCAAGCATGCCGCTGAAGGCGCGATGGTCGATTTCGCCCGCACGGGCATTGCCGATGTCATCACTCTTGATCAGGCGCATGTCAGTCGACAGGCTGCCCACCGGCAGCg                                                                                                                                               <  4:143853/149‑1 (MQ=255)         cGGCGCTGAGCTTGTGGCCACCGAGGCTGTAGCCAAGCATGCCGCTGAAGGCGCGATGGTCGATTTCGCCCGCACGGGCATTGCCGATGTCATCACTCTTGATCAGGCGCATGTCAGCCGACAGGCTGCCCACCGGCAGCGGCTGACTg                                                                                                                                       <  7:230189/149‑1 (MQ=255)         cGGCGCTGAGCTTGTGGCCACCGAGGCTGTAGCCAAGCATGCCGCTGAAGGCGCGATGGTCGATTTCGCCCGCACGGGCATTGCCGATGCCATCACTCTTGATCAGGCGCATGTCAGCCGACAGGCTGCCCACCGGCAGCGGCTGACTg                                                                                                                                       <  4:92488/149‑1 (MQ=255)                gAGCTTGTGGCCACCGAGGCTGTAGCCAAGCATGCCGCTGAAGGCGCGATGGTCGATTTCGCCCGCACGGGCATTGCCGATGTCATCACTCTTGATCAGGCGCATGTCAGCCGACAGGCTGCCCACCGGCAGCGGCTGACTGGccac                                                                                                                                  >  4:150633/1‑147 (MQ=255)                 aGCTTGTGGCCACCGAGGCTGTAGCCAAGCATGCCGCTGAAGGCGCGATGGTCGATTTCGCCCGCACGGGCATTGCCGATGTCATCACTCTTGATCAGGCGCATGTCAGCCGACAGGCTGCCCACCGGCAGCGGCTGACTGGCCACCAg                                                                                                                               >  1:94218/1‑149 (MQ=255)                       tgGCCACCGAGGCTGTAGCCAAGCATGCCGCTGAAGGCGCGATGGTCGATTTCGCCCGCACGGGCATTGCCGATGTCATCACTCTTGATCAGGCGCATGTCAGCCGACAGGCTGCCCACCGGCAGCGGCTGACTGGCCACCAGGCCGa                                                                                                                          <  7:223843/148‑1 (MQ=255)                       tgGCCACCGAGGCTGTAGCCAAGCATGCCGCTGAAGGCGCGATGGTCGATTTCGCCCGCACGGGCATTGCCGATGTCATCACTCTTGATCAGGCGCATGTCAGCCGACAGGCTGCCCACCGGCAGCGGCTGACTGGCCACCAGGCCGAg                                                                                                                         >  6:205924/1‑149 (MQ=255)                           cACCGAGGCTGTAGCCAAGCATGCCGCTGAAGGCGCGATGGTCGATTTCGCCCGCACGGGCATTGCCGATGTCATCACTCTTGATCAGGCGCATGTCAGCCGACAGGCTGCCTACCGccagcacttcctcggcctggtggccagtcagc                                                                                                                     >  8:139926‑M1/1‑117 (MQ=255)                           cACCGAGGCTGTAGCCAAGCATGCCGCTGAAGGCGCGATGGTCGATTTCGCCCGCACGGGCATTGCCGATGTCATCACTCTTGATCAGGCGCATGTCAGCCGACAGGCTGCCCACCGGCAGCGGCTGACTGGCCACCAGGCCGAGGAAg                                                                                                                     >  1:311016/1‑149 (MQ=255)                           cACCGAGGCTGTAGCCAAGCATGCCGCTGAAGGCGCGATGGTCGATTTCGCCCGCACGGGCATTGCCGATGTCATCACTCTTGATCAGGCGCATGTCAGCCGACAGGCTGCCCACCGGCAGCGGCTGACTGGCCACCAGGCCGAGGAAg                                                                                                                     >  3:291800/1‑149 (MQ=255)                             ccGAGGCTGTAGCCAAGCATGCCGCTGAAGGCGCGATGGTCGATTTCGCCCGCACGGGCATTGCCGATGTCATCACTCTTGATCAGGCGCATGTCAGCCGACAGGCTGCCCACCGGCAGCGGCTGACTGGcca                                                                                                                                   <  8:156193/133‑1 (MQ=255)                             ccGAGGCTGTAGCCAAGCATGCCGCTGAAGGCGCGATGGTCGATTTCGCCCGCACGGGCATTGCCGATGTCATCACTCTTGATCAGGCGCATGTCAGCCGACAGGCTGCCCACCGGCAGCGGCTGACTGGCCACCAGGCCGAGGAAGTg                                                                                                                   <  8:171631/149‑1 (MQ=255)                             ccGAGGCTGTAGCCAAGCATGCAGCTGAAGGCGCGATGGTCGATTTCGCCCGCACGGGCATTGCCGATGTCATCACTCTTGATCAGGCGCATGTCAGCCGACAGGCTGCCCACCGGCAGCGGCTGACTGGcca                                                                                                                                   >  7:156193/1‑133 (MQ=255)                              cGAGGCTGTAGCCAAGCATGCCGCTGAAGGCGCGATGGTCGATTTCGCCCGCACGGGCATTGCCGATGTCATCACTCTTGATCAGGCGCATGTCAGCCGACAGGCTGCCCACCGGCAGCGGCTGACTGGCCACCAGGCCGAGGAAGTg                                                                                                                   >  6:209213/1‑148 (MQ=255)                              cGAGGCTGTAGCCAAGCATGCCGCTGAAGGCGCGATGGTCGATTTCGCCCGCACGGGCATTGCCGATGTCATCACTCTTGATCAGGCGCATGTCAGCCGACAGGCTGCCCACCGGCAGCGGCTGACTGGCCACCAGGCCGAGGAAGTg                                                                                                                   <  5:209213/148‑1 (MQ=255)                              cGAGGCTGTAGCCAAGCATGCCGCTGAAGGCGCGATGGTCGATTTCGCCCGCACGGGCATTGCCGATGTCATCACTCTTGATCAGGCGCATGTCAGCCGACAGGCTGCCCACCGGCAGCGGCTGACTGGCCACCAGGCCGAGGAAGTGc                                                                                                                  <  2:94218/149‑1 (MQ=255)                                  gCTGTAGCCAAGCATGCCGCTGAAGGCGCGATGGTCGATTTCGCCCGCACGGGCATTGCCTATGTCATCACTCTTGATCAGGCGCATGTCAGCCGACAGGCTGCCCACCGGCAGCGGCTGACTTGCCACCAGGCCGAGGAAGTGCTgg                                                                                                               <  2:74083/148‑1 (MQ=255)                                             gCATGCCGCTGAAGGCGCGATGGTCGATTTCGCCCGCACGGGCATTGCCGATGTCATCACTCTTGATCAGGCGCATGTCAGCCGACAGGCTGCCTACCGccagcacttcctcggcctggtggccagtcagccgctgccggtgggcagcc                                                                                                   <  7:139926‑M1/149‑51 (MQ=255)                                             gCATGCCGCTGAAGGCGCGATGGTCGATTTCGCCCGCACGGGCATTGCCGATGTCATCACTCTTGATCAGGCGCATGTCAGCCGACAGGCTGCCCACCGccagcacttcctcggcctggtggccagtcagccgctgccggt                                                                                                           <  3:160360‑M1/141‑43 (MQ=255)                                             gCATGCCGCTGAAGGCGCGATGGTCGATTTCGCCCGCACGGGCATTGCCGATGTCATCACTCTTGATCAGGCGCATGTCAGCCGACAGGCTGCCCACCGccagcacttcctcggcctggtggccagtcagccgctgccggt                                                                                                           >  4:160360‑M1/1‑99 (MQ=255)                                              cATGCCGCTGAAGGCGCGATGGTCGATTTCGCCCGCACGGGCATTGCCGATGTCATCACTCTTGATCAGGCGCATGTCAGCCGACAGGCTGCCCACCGGCAGCGGCTGACTGGCCACCAGGCCGAGGAAGTGCTGGCGGTAGATATtct                                                                                                  <  2:105092/149‑1 (MQ=255)                                               aTGCCGCTGAAGGCGCGATGGTCGATTTCGCCCGCACGGGCATTGCCGATGTCATCACTCTTGATCAGGCGCATGTCAGCCGACAGGCTGCCCACCGGCAGCGGCTGACTGGCCACCAGGCCGAgg                                                                                                                        >  7:297727/1‑126 (MQ=255)                                               aTGCCGCTGAAGGCGCGATGGTCGATTTCGCCCGCACGGGCATTGCCGATGTCATCACTCTTGATCAGGCGCATGTCAGCCGACAGGCTGCCCACCGGCAGCGGCTGACTGGCCACCAGGCCGAgg                                                                                                                        <  8:297727/126‑1 (MQ=255)                                                  ccGCTGAAGGCGCGATGGTCGATTTCGCCCGCACGGGCATTGCCGATGTCATCACTCTTGATCAGGCGCATGTCAGCCGACAGGCTGCCCACCGGCAGCGGCTGACTGGCCACCAGGCCGAGGAAGTGCTGGCGGTAGATATTCTCCa                                                                                               <  8:129048/148‑1 (MQ=255)                                                   cGCTGAAGGCGCGATGGTCGATTTCGCCCGCACGGGCATTGCCGATGTCATCACTCTTGATCAGGCGCATGTCAGCCGACAGGCTGCCCACCGGCAGCGGCTGACTGGCCACCAGGCCGAGGAAGTGCTGGCGGTAGATATTCTCCA‑Gc                                                                                            >  1:99102/1‑149 (MQ=255)                                                    gCTGAAGGCGCGATGGTCGATTTCGCCCGCACGGGCATTGCCGATGTCATCACTCTTGATCAGGCGCATGTCAGCCGACAGGCTGCCCACCGGCAGCGGCTGACTGGCCACCAGGCCGAGGAAGTGCTGGCGGTAGATATtctc                                                                                                 <  8:123672/144‑1 (MQ=255)                                                    gCTGAAGGCGCGATGGTCGATTTCGCCCGCACGGGCATTGCCGATGTCATCACTCTTGATCAGGCGCATGTCAGCCGACAGGCTGCCCACCGGCAGCGGCTGACTGGCCACCAGGCCGAGGAAGTGCTGGCGGTAGATATtctc                                                                                                 >  7:123672/1‑144 (MQ=255)                                                     cTGAAGGCGCGATGGTCGATTTCGCCCGCACGGGCATTGCCGATGTCATCACTCTTGATCAGGCGCATGTCAGCCGACAGGCTGCCCACCGccagcacttcctcggcctggtggccagtcagccgctgccg                                                                                                             >  7:19547‑M1/1‑91 (MQ=255)                                                     cTGAAGGCGCGATGGTCGATTTCGCCCGCACGGGCATTGCCGATGTCATCACTCTTGATCAGGCGCATGTCAGCCGACAGGCTGCCCACCGccagcacttcctcggcctggtggccagtcagccgctgccg                                                                                                             <  8:19547‑M1/131‑41 (MQ=255)                                                          ggCGCGATGGTCGATTTCGCCCGCACGGGCATTGCCGATGTCATCACTCTTGATCAGGCGCATGTCAGCCGACAGGCTGCCCACCGGCAGc                                                                                                                                                <  4:86255/91‑1 (MQ=255)                                                                    tCGATTTCGCCCGCACGGGCATTGCCGATGTCATCACTCTTGATCAGGCGCATGTCAGCCGACAGGCTGCCCACCGGCAGCGGCTGACTGGCCACCAGGCCGAGGAAGTGCTGGCGGTAGATATTCTCCA‑GCTTGGCCACtt                                                                                  >  5:58807/1‑142 (MQ=255)                                                                    tCGATTTCGCCCGCACGGGCATTGCCGATGTCATCACTCTTGATCAGGCGCATGTCAGCCGACAGGCTGCCCACCGGCAGCGGCTGACTGGCCACCAGGCCGAGGAAGTGCTGGCGGTAGATATTCTCCA‑GCTTGGCCACtt                                                                                  <  6:58807/142‑1 (MQ=255)                                                                    tCGATTTCGCCCGCACGGGCATTGCCGATGTCATCACTCTTGATCAGGCGCATGTCAGCCGACAGGCTGCCCACCGGCAGCGGCTGACTGGCCACCAGGCCGAGGAAGTGCTGGCGGTAGATATTCTCCA‑GCTTGGCCACTTGGTACTg                                                                           >  2:25301/1‑149 (MQ=255)                                                                      gATTTCGCCCGCACGGGCATTGCCGATGTCATCACTCTTGATCAGGCGCATGTCAGCCGACAGGCTGCCCACCGGCAGCGGCTGACTGGCCACCAGGCCGAGGAAGTGCTGGCGGTAGATATTCTCCA‑GCTTGGCCACTTGGTACTgg                                                                          <  2:311016/148‑1 (MQ=255)                                                                       aTTTCGCCCGCACGGGCATTGCCGATGTCATCACTCTTGATCAGGCGCATGTCAGCCGACAGGCTGCCCACCGGCAGCGGCTGACTGGCCACCAGGCCGAGGAAGTGCTGGCGGTAGATATTCTCCA‑GCTTGGCCACTTGGTACTGGgc                                                                        >  8:229392/1‑149 (MQ=255)                                                                                            ccGATGTCATCACTCTTGATCAGGCGCATGTCAGCCGACAGGCTGCCCACCGGCAGCGGCTGACTGGCCACCAGGCCGAGGAAGTGCTGGCGGTAGATATTCTCCA‑GCTTGGCCACTTGGTACTGGGCGCTGAAACGCTCGTTGAAACg                                                   <  7:229392/149‑1 (MQ=255)                                                                                             cGATGTCATCACTCTTGATCAGGCGCATGTCAGCCGACAGGCTGCCCACCGGCAGCGGCTGACTGGCCACCAGGCCGAGGAAGTGCTGGCGGTAGATATTCTCCA‑GCTTGGCCACTTGGTACTGGGCGCTGAAACGCTCGTTGAAACgg                                                  <  4:291800/149‑1 (MQ=255)                                                                                                    atcaCTCTTGATCAGGCGCATGTCAGCCGACAGGCTGCCCACCGGCAGCGGCTGACTGGCCACCAGGCCGAGGAAGTGCTGGCGGTAGATATTCTCCA‑GCTTGGCCACTTGGTACTGGGCGCTGAAACGCTCGTTGAAACGGTAGTCGa                                           >  4:249549/1‑149 (MQ=255)                                                                                                         tctTGATCAGGCGCATGTCAGCCGACAGGCTGCCCACCGGCAGCGGCTGACTGGCCACCAGGCCGAGGAAGTGCTGGCGGTAGATATTCTCCA‑GCTTGGCCACTTGGTACTGGGCGCTGAAACGCTCGTTGAAACgg                                                  <  6:102781/137‑1 (MQ=255)                                                                                                         tctTGATCAGGCGCATGTCAGCCGACAGGCTGCCCACCGGCAGCGGCTGACTGGCCACCAGGCCGAGGAAGTGCTGGCGGTAGATATTCTCCA‑GCTTGGCCACTTGGTACTGGGCGCTGAAACGCTCGTTGAAACgg                                                  >  5:102781/1‑137 (MQ=255)                                                                                                           ttGATCAGGCGCATGTCAGCCGACAGGCTGCCCACCGGCAGCGGCTGACTGGCCACCAGGCCGAGGAAGTGCTGGCGGTAGATATTCTCCA‑GCTTGGCCACTTGGTACTGGGCGCTGAAACGCTCGTTGAAACGGTAGTCGACACCg                                      <  5:205924/147‑1 (MQ=255)                                                                                                                    cgcATGTCAGCCGACAGGCTGCCCACCGGCAGCGACTGACTGGCCACCAGGTCGAGGAAGTGCTGGCGGTAGATATTCTCCA‑GCTTGGCCACTTGGTACTGGGCGCTGAAACGCTCGTTGAAACGGTAGTCGACACCGGCCAGGTCGaa                           <  7:87684/149‑1 (MQ=255)                                                                                                                            aGCCGACAGGCTGCCCACCGGCAGCGGCTGACTGGCCACCAGGCCGAGGAAGTGCTGGCGGTAATTAATAGGCACCCTTGGCCCGTTGGTAGTGGCGCCGGAACCGTTCGTGGAACCGGTAGACGCCACCGGCCAGTGCGAGGTggcgg                    >  1:261299/1‑146 (MQ=255)                                                                                                                             gCCGACAGGCTGCCCACCGGCAGCGGCTGACTGGCCACCAGGCCGAGGAAGTGCTGGCGGTAGATATTCTCCA‑GCTTGGCCACTTGGTACTGGGCGCTGAAACGCGCGTTGAAACGGTAGTCGACACCGGCCAGGTCGAAGTGGTCGGc                  <  1:25301/149‑1 (MQ=255)                                                                                                                                    ggCTGCCCACCGGCAGCGGCTGACTGGCCACCAGGCCGAGGAAGTGCTGGcggtaggcagcctgtcggctgacatgcgcctgatcaagagtgatgacatcggcaatgcccgtgcgggcgaaatcgaccatcgcgccttcagcggcatgc            <  7:139926‑M2/149‑100 (MQ=255)                                                                                                                                     gCTGCCCACCGGCAGCGGCTGACTGGCCACCAGGCCGAGGAAGTGCTGGCGGTAGATATTCTCCA‑GCTTGGCCACTTGGTACTGGGCGCTGAAACGCTCGTTGAAACGGTAGTCGACACCg                                      <  6:177189/121‑1 (MQ=255)                                                                                                                                       tGCCCACCGGCAGCGGCTGACTGGCCACCAGGCCGAGGAAGTGCTGGCGGTAGATATTCTCCA‑GCTTGGCCACTTGGTACTGGGCGCTGAAACGCTCGTTGAAACGGTAGTCGACACCGGcc                                   >  4:164632/1‑122 (MQ=255)                                                                                                                                       tGCCCACCGGCAGCGGCTGACTGGCCACCAGGCCGAGGAAGTGCTGGCGGTAGATATTCTCCA‑GCTTGGCCACTTGGTACTGGGCGCTGAAACGCTCGTTGAAACGGTAGTCGACACCGGcc                                   <  3:164632/122‑1 (MQ=255)                                                                                                                                         cccACCGGCAGCGGCTGACTGGCCACCAGGCCGAGGAAGTGCTGGCGGTAGATATTCTCCA‑GCTTGGCCACTTGGTACTGGGCGCTGAAACGCTCGTTGAAACGGTAGTCGACACCGGCCAGGTCGAAGTGGTCGGCTTCGGTATCg        >  5:71040/1‑147 (MQ=255)                                                                                                                                          ccACCGGCAGCGGCTGACTGGCCACCAGGCCGAGGAAGTGCTGGCGGTAGATATTCTCCA‑GCTTGGCCACTTGGTACTGGGCGCTGAAACGCTCGTTGAAACGGTAGTCGACACCGGCCAGGTCGAAGTGGTCGGCTTCGGTATCGCAg     >  2:61996/1‑149 (MQ=255)                                                                                                                                           cACCGGCAGCGGCTGACTGGCCACCAGGCCGAGGAAGTGCTGGCGGTAGATATTCTCCA‑GCTTGGCCACTTGGTACTGGGCGCTGAAACGCTCGTTGAAACGGTAGTCGACACCGGCCAGGTCGAAGTGGTCGGCTTCGGTATCGCAgg    >  1:187540/1‑149 (MQ=255)                                                                                                                                            aCCGGCAGCGGCTGACTGGCCACCAGGCCGAGGAAGTGCTGGcggtgggcagcctgtcggctgacatgcgcctgatcaagagtgatgacatcggcaatgcccgtgcgggcgaaatcgaccatcgcgccttcagcggcatgc            >  4:160360‑M2/1‑42 (MQ=255)                                                                                                                                            aCCGGCAGCGGCTGACTGGCCACCAGGCCGAGGAAGTGCTGGcggtgggcagcctgtcggctgacatgcgcctgatcaagagtgatgacatcggcaatgcccgtgcgggcgaaatcgaccatcgcgccttcagcggcatgc            <  3:160360‑M2/141‑100 (MQ=255)                                                                                                                                            aCCGGCAGCGGCTGACTGGCCACCAGGCCGAGGAAGTGCTGGCGGTAGATATTCTCCA‑GCTTGGCCACTTGGTACTGGGCGCTGAAACGCTCGTTGAAACGGTAGTCGACACCGGCCAGGTCGAAGTGGTCGGCTTCGGTATCGCAgg    >  5:242304/1‑148 (MQ=255)                                                                                                                                             ccGGCAGCGGCTGACTGGCCACCAGGCCGAGGAAGTGCTGGCGGTAGATATTCTCCA‑GCTTGGCCACTTGGTACTGGGCGCTGAAACGCTCGTTGAAACGGTAGTCGACACCGGCCAGGTCGAAGTGGTCGGCTTCGGTATCGCAGGCa  >  7:247788/1‑149 (MQ=255)                                                                                                                                              cGGCAGCGGCTGACTGGCCACCAGGCCGAGGAAGTGCTGGcggtgggcagcctgtcggctgacatgcgcctgatcaagagtgatgacatcggcaatgcccgtgcgggcgaaatcgaccatcgcgccttcag                    >  7:19547‑M2/1‑40 (MQ=255)                                                                                                                                              cGGCAGCGGCTGACTGGCCACCAGGCCGAGGAAGTGCTGGcggtgggcagcctgtcggctgacatgcgcctgatcaagagtgatgacatcggcaatgcccgtgcgggcgaaatcgaccatcgcgccttcag                    <  8:19547‑M2/131‑92 (MQ=255)                                                                                                                                               |                                                                                                                                                    CTGCCAGCCGGCGCTGAGCTTGTGGCCACCGAGGCTGTAGCCAAGCATGCCGCTGAAGGCGCGATGGTCGATTTCGCCCGCACGGGCATTGCCGATGTCATCACTCTTGATCAGGCGCATGTCAGCCGACAGGCTGCCCACCGGCAGCGGCTGACTGGCCACCAGGCCGAGGAAGTGCTGGCGGTAGATATTCTCCA‑GCTTGGCCACTTGGTACTGGGCGCTGAAACGCTCGTTGAAACGGTAGTCGACACCGGCCAGGTCGAAGTGGTCGGCTTCGGTATCGCAGGCA  >  NC_002947/4294455‑4294743

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.