| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_002947 | 4571484 = | 47 (0.900) | 3 (0.060) | 3/250 | NT | 6.3% | coding (1348/2775 nt) | treY | maltooligosyl trehalose synthase |
| ? | NC_002947 | 4571559 = | 45 (0.920) | coding (1423/2775 nt) | treY | maltooligosyl trehalose synthase | |||||
TCCAGTAGCGGCCAGTCAGCTTCGGCAAGGTCTTGCCGGGCATTGGTCAGGGCCTGCTGGAAGAACGTTTCGTCCTGCGCCGGGCGCCCGCAGGCATTGAAGTAGGTTCGGTAAACCGGGTAATGCGCCACCAACGCCTGCAAGGCCCGGCG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_002947/4571635‑4571484‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gcccggcgCAGGACGAAACGTTCTTCCAGCAGGCCCTGACCAATGCCCGGCAAGACCTTGCCGAAGCTGACTGGCCGCTACTGGACCAACTTGAACGGTGGCTGGGCGGGCAAGCCTGGCGGCATCTGCCACCGGGGCGCGCCCGCAAGCAA > NC_002947/4571559‑4571702 TCCAGTAGCGGCCAGTCAGCTTCGGCAAGGTCTTGCCGGGCATTGGTCAGGGCCTGCTGGAAGAACGTTTCGTCCTGCGCCGGGCGCCCGCAGGCATTGAAGTAGGTTCGGTAAACCGGGTAATGCGCCACCAACGCCTGCAAGGCCCG < 2:20245/149‑1 AGTAGCGGCCAGTCAGCGTCGGCAAGGTCTTGCCGGGCATTGGTCAGGGCCTGCTGGAAGAACGTTTCGTCCTGCGCCGGGCGCCCGCAGGCATTGAAGTAGGTTCGGTAAACCGGGTAATGCGCCACCAACGCCTGCAAGGCCCGGCG < 2:173586/149‑1 TGCTGGAAGAACGTTTCGTCCTGCGCCGGGCGCCCGCAGGCATTGAAGTAGGTTCGGTAAACCGGGTAATGCGCCACCAACGCCTGCAAGGCCCGG < 6:41385/96‑1 TCCTGCGCCGGGCGCCCGCAGGCATTGAAGTAGGTTCGGTAAACCGGGTAATGCGCCACCAACGCCTGCAAGGCCCGGCGCAGGACGAAACGTTCTTCCAGCAGGCCCTGACCAATGCCCGGCAAGACCTTGCCGAAGCTGACTGGCCG > 5:304385/1‑149 CTGCGCCGGGCGCCCGCAGGCATTGAAGTAGGTTCGGTAAACCGGGTAATGCGCCACCAACGCCTGCAAGGCCCGGCGCAGGACGAAACGTTCTTCCAGCAGGCCCTGACCAATGCCCGGCAAGACCTTGCCGAAGCTGACTGGCCGC > 8:297890/1‑148 AGTAGGTTCGGTAAACCGGGTAATGCGCCACCAACGCCTGCAAGGCCCGGCGCAGGACGAAACGTTCTTCCAGCAGGCCCTGACCAATGCCCGGCAAGACCTTGCCGAAGCTGACTGGCCGCTACTGGACCAACTTGAACGGTGGCTGG < 6:304385/149‑1 GCCCGGCGCAGGACGAAACGTTCTTCCAGCAGGCCCTGACCAATGCCCGGCAAGACCTTGCCGAAGCTGACTGGCCGCTACTGGACCAACTTGAACGGTGGCTGGGCGGGCAAGCCTGGCGGCATCTGCCACCGGG > 1:6393/1‑136 GCCCGGCGCAGGACGAAACGTTCTTCCAGCAGGCCCTGACCAATGCCCGGCAAGACCTTGCCGAAGCTGACTGGCCGCTACTGGACCAACTTGAACGGTGGCTGGGCGGGCAAGCCTGGCGGCATCTGCCACCGGG < 2:6393/136‑1 CGGCGCAGGACGAAACGTTCTTCCAGCAGGCCCTGACCAATGCCCGGCAAGACCTTGCCGAAGCTGACTGGCCGCTACTGGACCAACTTGAACGGTGGCTGGGCGGGCAAGCCTGGCGGCATCTGCCACCGGGGCGCGCCCGCAAGCAA < 4:126296/149‑1 TCCAGTAGCGGCCAGTCAGCTTCGGCAAGGTCTTGCCGGGCATTGGTCAGGGCCTGCTGGAAGAACGTTTCGTCCTGCGCCGGGCGCCCGCAGGCATTGAAGTAGGTTCGGTAAACCGGGTAATGCGCCACCAACGCCTGCAAGGCCCGGCG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_002947/4571635‑4571484‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gcccggcgCAGGACGAAACGTTCTTCCAGCAGGCCCTGACCAATGCCCGGCAAGACCTTGCCGAAGCTGACTGGCCGCTACTGGACCAACTTGAACGGTGGCTGGGCGGGCAAGCCTGGCGGCATCTGCCACCGGGGCGCGCCCGCAAGCAA > NC_002947/4571559‑4571702 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |