New junction evidence | |||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|
seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
* | ? | NC_002947 | 4571484 = | 47 (0.900) | 3 (0.060) | 3/250 | NT | 6.3% | coding (1348/2775 nt) | treY | maltooligosyl trehalose synthase |
? | NC_002947 | 4571559 = | 45 (0.920) | coding (1423/2775 nt) | treY | maltooligosyl trehalose synthase |
GCCCGGACTTCCCTGAAGAAGTGCGCCAGGCCCGTCACCTGGTGCTCAACGCCAGCCTGGCCGGTGACTGCGAGTCGGTGGCCCAGGCACTGTTGCAGGTGGCGCGCAACGACCTGATGACCCGTGACCTGACCCTGGGCGCGATTCGCCGGGCCTTGCAGGCGTTGGTGGCGCATTACCCGGTTTACCGAACCTACTTCAATGCCTGCGGGCGCCCGGCGCAGGACGAAACGTTCTTCCAGCAGGCCCTGACCAATGCCCGGCAAGACCTTGCCGAAGCTGACTGGCCGCTACT > NC_002947/4571338‑4571632 | gcCCGGACTTCCCTGAAGAAGTGCGCCAGGCCCGTCACCTGGTGCTCAACGCCAGCCTGGCCGGTGACTGCGAGTCGGTGGCCCAGGCACTGTTGCAGGTGGCGCGCAACGACCTGATGACCCGTGACCTGACCCTGGGCGCGATTCGc > 5:103617/1‑149 (MQ=255) cccGGACTTCCCTGAAGAAGTGCGCCAGGCCCGTCACCTGGTGCTCAACGCCAGCCTGGCCGGTGACTGCGAGTCGGTGGCCCAGGCACTGTTGCAGGTGGCGCGCAACGACCTGATGACCCGTGACCTGACCCTGGGCGCGATTCGcc < 5:259710/149‑1 (MQ=255) ttgcttgcgggcgcgccccggtggcagatgccgccaggcttgcccgcccagccaccgttcaagttggtccagtagcggccagtcagcttcggcaaggtcttgccgggcattggtcagggcctgctggaagaacgtttcgtcctgCGCCg < 4:126296‑M1/5‑1 (MQ=255) cGGACTTCCCTGAGGAAGTGCGCCAGGCCCGTCACCTGGTGCTCAACGCCAGCCTGGCCGGTGACTGCGAGTCGGTGGCCCAGGCACTGTTGCAGGTGGCGCGCAACGACCTGATGACCCGTGACCTGACCCTGGGCGCGATTCGCCgg < 3:192413/149‑1 (MQ=255) ggACTTCCCTGAAGAAGTGCGCCAGGCCCGTCACCTGGTGCTCAACGCCAGCCTGGCCGGTGACTGCGAGTCGGTGGCCCAGGCACTGTTGCAGGTGGCGCGCAACGACCTGATGACCCGTGACCTGACCCTGGGCGCGATTCGCCggg < 2:143432/149‑1 (MQ=255) ttCCCTGAAGAAGTGCGCCAGGCCCGTCACCTGGTGCTCAACGCCAGCCTGGCCGGTGACTGCGAGTCGGTGGCCCAGGCACTGTTGCAGGTGGCGCGCAACGACCTGATGACCCGTGACCTGACCCTGGGCGCGATTCGCCGGGCCtt > 1:126883/1‑149 (MQ=255) cccTGAAGAAGTGCGCCAGGCCCGTCACCTGGTGCTCAACGCCAGCCTGGCCGGTGACTGCGAGTCGGTGGCCCAGGCACTGTTGCAGGTGGCGCGCAACGACCTGATGACCCGTGACCTGACCCTGGGCGCGATTCGCCGGGCCTTg < 1:255825/148‑1 (MQ=255) cccTGAAGAAGTGCGCCAGGCCCGTCACCTGGTGCTCAACGCCAGCCTGGCCGGTGACTGCGAGTCGGTGGCCCAGGCACTGTTGCAGGTGGCGCGCAACGACCTGATGACCCGTGACCTGACCCTGGGCGCGATTCGCCGGGCCTTg > 2:188279/1‑148 (MQ=255) cTGAAGAAGTGCGCCAGGCCCGTCACCTGGTGCTCAACGCCAGCCTGGCCGGTGACTGCGAGTCGGTGGCCCAGGCACTGTTGCAGGTGGCGCGCAACGACCTGATGACCCGTGACCTGACCCTGGGCGCGATTCGCCGGGCCTTGCAg > 3:190433/1‑149 (MQ=255) tGAAGAAGTGCGCCAGGCCCGTCACCTGGTGCTCAACGCCAGCCTGGCCGGTGACTGCGAGTCGGTGGCCCAGGCACTGTTGCAGGTGGCGCGCAACGACCTGATGACCCGTGACCTGACCCTGGGCGCGATTCGCCGGGCCTTGCAgg > 5:150752/1‑149 (MQ=255) tGAAGAAGTGCGCCAGGCCCGTCACCTGGTGCTCAACGCCAGCCTGGCCGGTGACTGCGAGTCGGTGGCCCAGGCACTGTTGCAGGTGGCGCGCAACGACCTGATGACCCGTGACCTGACCCTGGGCGCGATTCGCCGGGCCTTGCAg > 5:136417/1‑148 (MQ=255) gaagaaGTGCGCCAGGCCCGTCACCTGGTGCTCAACGCCAGCCTGGCCGGTGACTGCGAGTCGGTGGCCCAGGCACTGTTGCAGGTGGCGCGCAACGACCTGATGACCCGTGACCTGACCCTGGGCGCGATTCGCCGGGCCTTGCAGGc > 3:35111/1‑149 (MQ=255) aagaagTGCGCCAGGCCCGTCACCTGGTGCTCAACGCCAGCCTGGCCGGTGACTGCGAGTCGGTGGCCCAGGCACTGTTGCAGGTGGCGCGCAACGACCTGATGACCCGTGACCTGACCCTGGGCGCGATTCGCCGGGCCTTGCAg < 6:136417/146‑1 (MQ=255) agaagTGCGCCAGGCCCGTCACCTGGTGCTCAACGCCAGCCTGGCCGGTGACTGCGAGTCGGTGGCCCAGGCACTGTTGCAGGTGGCGCGCAACGACCTGATGACCCGTGACCTGACCCTGGGCGCGATTCGCCGGGCCTTGCAGGCGt < 1:102237/149‑1 (MQ=255) gaagTGCGCCAGGCCCGTCACCTGGTGCTCAACGCCAGCCTGGCCGGTGACTGCGAGTCGGTGGCCCAGGCACTGTTGCAGGTGGCGCGCAACGACCTGATGACCCGTGACCTGACCCTGGGCGCGATTCGCCGGGCCTTGCAGGCGtt < 3:104265/149‑1 (MQ=255) cccggtggcagatgccgccaggcttgcccgcccagccaccgttcaagttggtccagtagcggccagtcagcttcggcaaggtcttgccgggcattggtcagggcctgctggaagaacgtttcgtcctgCGCCGGGc < 2:6393‑M1/8‑1 (MQ=255) cccggtggcagatgccgccaggcttgcccgcccagccaccgttcaagttggtccagtagcggccagtcagcttcggcaaggtcttgccgggcattggtcagggcctgctggaagaacgtttcgtcctgCGCCGGGc > 1:6393‑M1/129‑136 (MQ=255) aagTGCGCCAGGCCCGTCACCTGGTGCTCAACGCCAGCCTGGCCGGTGACTGCGAGTCGGTGGCCCAGGCACTGTTGCAGGTGGCGCGCAACGACCTGATGACCCGTGACCTGACCCTGGGCGCGATTCGCCGGGCCTTGCAGGCGTtg < 4:190433/149‑1 (MQ=255) cAGGCCCGTCACCTGGTGCTCAACGCCAGCCTGGCCGGTGACTGCGAGTCGGTGGCCCAGGCACTGTTGCAGGTGGCGCGCAACGACCTGATGACCCGTGACCTGACCCTGGGCGCGATTCGCCGGGCCTTGCAGGCGTTGGTGGCGCa > 1:314659/1‑149 (MQ=255) gTGCTCAACGCCAGCCTGGCCGGTGACTGCGAGTCGGTGGCCCAGGCACTGTTGCAGGTGGCGCGCAACGACCTGATGACCCGTGACCTGACCCTGGGCGCGATTCGCCGGGCCTTGCAGGCGTTGGTGGCGCATTACCCGGTTTAcc > 5:89859/1‑148 (MQ=255) gTGCTCAACGCCAGCCTGGCCGGTGACTGCGAGTCGGTGGCCCAGGCACTGTTGCAGGTGGCGCGCAACGACCTGATGACCCGTGACCTGACCCTGGGCGCGATTCGCCGGGCCTTGCAGGCGTTGGTGGCGCATTACCCGGTTTAcc > 3:23272/1‑148 (MQ=255) cTCAACGCCAGCCTGGCCGGTGACTTCGAGTCGGTGTCCCAGGCACTGTTGCAGGTGGCGCGCAACGACCTGATGACCCGTGACCTGACCCTGGGCGCGATTCGCCGGGCCTTGCAGGCGTTGGTGGCGCATTACCCGGTTTACCGaa < 4:87408/148‑1 (MQ=255) cTCAACGCCAGCCTGGCCGGTGACTGCGAGTCGGTGGCCCAGGCACTGTTGCAGGTGGCGCGCAACGACCTGATGACCCGTGACCTGACCCTGGGCGCGATTCGCCGGGCCTTGCAGGCGTTGGTGGCGCATTACCCGGTTTACCGAAc > 6:222179/1‑149 (MQ=255) cTCAACGCCAGCCTGGCCGGTGACTGCGAGTCGGTGGCCCAGGCACTGTTGCAGGTGGCGCGCAACGACCTGATGACCCGTGACCTGACCCTGGGCGCGATTCGCCGGGCCTTGCAGGCGTTGGTGGCGCATTACCCGGTTTACCGAAc < 6:8693/149‑1 (MQ=255) tCAACGCCAGCCTGGCCGGTGACTGCGAGTCGGTGGCCCAGGCACTGTTGCAGGTGGCGCGCAACGACCTGATGACCCGTGACCTGACCCTGGGCGCGATTCGCCGGGCCtt > 7:295515/1‑112 (MQ=255) tCAACGCCAGCCTGGCCGGTGACTGCGAGTCGGTGGCCCAGGCACTGTTGCAGGTGGCGCGCAACGACCTGATGACCCGTGACCTGACCCTGGGCGCGATTCGCCGGGCCtt < 8:295515/112‑1 (MQ=255) ccagccaccgttcaagttggtccagtagcggccagtcagcttcggcaaggtcttgccgggcattggtcagggcctgctggaagaacgtttcgtcctgCGCCGGGCCTTGCAGGCGTTGGTGGCGCATTACCCGGTTTACCGAACCTACt < 6:304385‑M1/52‑1 (MQ=255) cAGCCTGGCCGGTGACTGCGAGTCGGTGGCCCAGGCACTGTTGCAGGTGGCGCGCAACGACCTGATGACCCGTGACCTGACCCTGGGCGCGATTCGCCGGGCCTTGCAGGCGTTGGTGGCGCATTACCCGGTTTACCGAACCTACTTc > 8:31982/1‑148 (MQ=255) cGGTGACTGCGAGTCGGTGGCCCAGGCACTGTTGCAGGTGGCGCGCAACGACCTGATGACCCGTGACCTGACCCTGGGCGCGATTCGCCGGGCCTTGCAGGCGTTGGTGGCGCATTACCCGGTTTACCGAACCTACTTCAAt < 4:58467/142‑1 (MQ=255) cGGTGACTGCGAGTCGGTGGCCCAGGCACTGTTGCAGGTGGCGCGCAACGACCTGATGACCCGTGACCTGACCCTGGGCGCGATTCGCCGGGCCTTGCAGGCGTTGGTGGCGCATTACCCGGTTTACCGAACCTACTTCAAt > 3:58467/1‑142 (MQ=255) cGGTGACTGCGAGTCGGTGGCCCAGGCACTGTTGCAGGTGGCGCGCAACGACCTGATGACCCGTGACCTGACCCTGGGCGCGATTCGCCGGGCCTTGCAGGCGTTGGTGGCGCATTACCCGGTTTACCGAACCTACTTCAATGCCTGCg < 6:150752/149‑1 (MQ=255) ggTGACTGCGAGTCGGTGGCCCAGGCACTGTTGCAGGTGGCGCGCAACGACCTGATGACCCGTGACCTGACCCTGGGCGCGATTCGCCGGGCCTTGCAGGCGTTGGTGGCGCATTACCCGGTTTACCGAACCTACTTCAATGCCTGCgg > 2:43374/1‑149 (MQ=255) gTGACTGCGAGTCGGTGGCCCAGGCACTGTTGCAGGTGGCGCGCAACGACCTGATGACCCGTGACCTGACCCTGGGCGCGATTCGCCGGGCCTTGCAGGCGTTGGTGGCGCATTACCCGGTTTACCGAACCTACTTCAATGCCTGCggg > 4:135213/1‑149 (MQ=255) tGCGAGTCGGTGGCCCAGGCACTGTTGCAGGTGCCGCGCAACGACCTGATGACCCGAGACCTGACCCTGGGCGCGATTCGCCGGGCCTTGCAGGCGTTGGTGGCGCATTACCCGGTTTACCCAACCTACTACAAAGCCTGCGGGCGccc > 4:121906/1‑149 (MQ=255) gTCGGTGGCCCAGGCACTGTTGCAGGTGGCGCGCAACGACCTGATGACCCGTGACCTGACCCTGGGCGCGATTCGCCGGGCCTTGCAGGCGTTGGTGGCGCATTACCCGGTTTACCGAACCTACTTCAATGCCTGCGGGCGCCCGgcg > 2:273977/1‑148 (MQ=255) gcggccagtcagcttcggcaaggtcttgccgggcattggtcagggcctgctggaagaacgtttcgtcctgCGCCGGGCCTTGCAGGCGTTGGTGGCGCATTACCCGGTTTACCGAACCTACTTCAATGCCTGCGGGCGCCCGGCGCAg > 8:297890‑M1/71‑148 (MQ=255) gTGGCCCAGGCACTGTTGCAGGTGGCGCGCAACGACCTGATGACCCGTGACCTGACCCTGGGCGCGATTCGCCGGGCCTTGCAGGCGTTGGTGGCGCATTACCCGGTTTACCGAACCTACTTCAATGCCTGCGGGCGCCCGGCGCAGGa < 2:235101/149‑1 (MQ=255) cggccagtcagcttcggcaaggtcttgccgggcattggtcagggcctgctggaagaacgtttcgtcctgCGCCGGGCCTTGCAGGCGTTGGTGGCGCATTACCCGGTTTACCGAACCTACTTCAATGCCTGCGGGCGCCCGGCGCAGGa > 5:304385‑M1/70‑149 (MQ=255) gCCCAGGCACTGTTGCAGGTGGCGCGCAACGACCTGATGACCCGTGACCTGACCCTGGGCGCGATTCGCCGGGCCTTGCAGGCGTTGGTGGCGCATTACCCGGTTTACCGAACCTACTTCAATGCCTGCGGGCGCCCGGCGCAGGACg > 3:179767/1‑148 (MQ=255) gCACTGTTGCAGGTGGCGCGCAACGACCTGATGACCCGTGACCTGACCCTGGGCGCGATTCGCCGGGCCTTGCAGGCGTTGGTGGCGCATTACCCGGTTTACCGAACCTACTTCAATGCCTGCGGGCGCCCGGCGCAGGACGAAACGtt < 6:103617/149‑1 (MQ=255) tGTTGCAGGTCGCGCGCAAGGACCTGATGAGCCGTGAGCTGAGCCTGGGCGCGATTCGCCGGGCCTTGCAGGCGTTGGTGGCGCATTACCCGGTTTACCGAACCTACTTCTATGCCTGCGGGCGCCCGGCGCAGGACGAAACGttcttc < 3:121906/149‑1 (MQ=255) cAGGTGGCGCGCAACGACCTGATGACCCGTGACCTGACCCTGGGCGCGATTCGCCGGGCCTTGCAGGCGTTGGTGGCGCATTGCCCGGTTTACCGAACCTACTTCAATGCCTGCGGGCGCCCGGCGCAGGACGAAACGTTCTTCcag > 4:85834/1‑147 (MQ=255) ggTGGCGCGCAACGACCTGATGACCCGTGACCTGACCCTGGGCGCGATTCGCCGGGCCTTGCAGGCGTTGGTGGCGCATTACCCGGTTTACCGAACCTACTTCAATGCCTGCGGGCGCCCGGCGCAGGACGAAACGTTCTTCCAGCAgg > 8:224320/1‑149 (MQ=255) gcgcgcAACGACCTGATGACCCGTGACCTGACCCTGGGCGCGATTCGCCGGGCCTTGCAGGCGTTGGTGGCGCATTACCCGGTTTACCGAACCTACTTCAATGCCTGCGGGCGCCCGGCGCAGGACGAAACGTTCTTCCAGCAGGCCCt < 7:224320/149‑1 (MQ=255) gcgcAACGACCTGATGACCCGTGACCTGACCCTGGGCGCGATTCGCCGGGCCTTGCAGGCGTTGGTGGCGCATTACCCGGTTTACCGAACCTACTTCAATGCCTGCGGGCGCCCGGCGCAGGACGAAACGTTCTTCCAGCAGGCCCTGa < 3:135213/149‑1 (MQ=255) gcgcAACGACCTGATGACCCGTGACCTGACCCTGGGCGCGATTCGCCGGGCCTTGCAGGCGTTGGTGGCGCATTACCCGGTTTACCGAACCTACTTCAATGCCTGCGGGCGCCCGGCGCAGGACGAAACGTTCTTCCAGCAGGCCCTGa < 4:35111/149‑1 (MQ=255) aCGACCTGATGACCCGTGACCTGACCCTGGGCGCGATTCGCCGGGCCTTGCAGGCGTTGGTGGCGCATTACCCGGTTTACCGAACCTACTTCAATGCCTGCGGGCGCCCGGCGCAGGACGAAACGTTCTTCCAGCAGGCCCTGACCAAt < 6:89859/149‑1 (MQ=255) ccTGATGACCCGTGACCTGACCCTGGGCGCGATTCGCCGGGCCTTGCAGGCGTTGGTGGCGCATTTCCCGGTTTACCGAACCTACTTCAATGCCTGCGGGCGCCCGGCGCAGGACGAAACGTTCTTCCAGCAGGCCCTGACCAATGccc < 3:85834/149‑1 (MQ=255) atgaCCCGTGACCTGACCCTGGGCGCGATTCGCCGGGCCTTGCAGGCGTTGGTGGCGCATTACCCGGTTTACCGAACCTACTTCAATGCCTGCGGGCGCCCGGCGCAGGACGAAACGTTCTTCCAGCAGGCCCTGACCAATGCCCgg < 5:222179/147‑1 (MQ=255) tgaCCCGTGACCTGACCCTGGGCGCGATTCGCCGGGCCTTGCAGGCGTTGGTGGCGCATTACCCGGTTTACCGAACCTACTTCAATGCCTGCGGGCGCCCGGCGCAGGACGAAACGTTCTTCCAGCAGGCCCTGACCAATGCCCGGCaa < 1:188279/149‑1 (MQ=255) cccGTGACCTGACCCTGGGCGCGATTCGCCGGGCCTTGCAGGCGTTGGTGGCGCATTACCCGGTTTACCGAACCTACTTCAATGCCTGCGGGCGCCCGGCGCAGGACGAAACGTTCTTCCAGCAGGCCCTGACCAATGCCCGGCAAGAc > 1:16113/1‑149 (MQ=255) ccGTGACCTGACCCTGGGCGCGATTCGCCGGGCCTTGCAGGCGTTGGTGGCGCATTACCCGGTTTACCGAACCTACTTCAATGCCTGCGGGCGCCCGGCGCAGGACGAAACGTTCTTCCAGCAGGCCCTGACCAATGCCCGGCAAGAcc < 7:23110/149‑1 (MQ=255) cctgaccCTGGGCGCGATTCGCCGGGCCTTGCAGGCGTTGGTGGCGCATTACCCGGTTTACCGAACCTACTTCAATGCCTGCGGGCGCCCGGCGCAGGACGAAACGTTCTTCCAGCAGGCCCTGACCAATGCCCGGCAAGACCTTGcc > 5:106567/1‑148 (MQ=255) accCTGGGCGCGATTCGCCGGGCCTTGCAGGCGTTGGTGGCGCATTACCCGGTTTACCGAACCTACTTCAATGCCTGCGGGCGCCCGGCGCAGGACGAAACGTTCTTCCAGCAGGCCCTGACCAATGCCCGGCAAGACCTTGCCGaa < 2:126883/147‑1 (MQ=255) cTGGGCGCGATTCGCCGGGCCTTGCAGGCGTTGGTGGCGCATTACCCGGTTTACCGAACCTACTTCAATGCCTGCGGGCGCCCGGCGCAGGACGAAACGTTCTTCCAGCAGGCCCTGACCAATGCCCGGCAAGACCTTGCCGAAGCTGa < 2:314659/149‑1 (MQ=255) cgATTCGCCGGGCCTTGCAGGCGTTGGTGGCGCATTACCCGGTTTACCGAACCTACTTCAATGCCTGCGGGCGCCCGGCGCAGGACGAAACGTTCTTCCAGCAGGCCCTGACCAATGCCCGGCAAGACCTTGCCGAAGCTGACTGGCCg < 2:16113/149‑1 (MQ=255) cgATTCGCCGGGCCTTGCAGGCGTTGGTGGCGCATTACCCGGTTTACCGAACCTACTTCAATGCCTGCGGGCGCCCGGCGCAGGACGAAACGTTCTTCCAGCAGGCCCTGACCAATGCCCGGCAAGACCTTGCCGAAGCTGACTGGCCg < 7:31982/149‑1 (MQ=255) gATTCGCCGGGCCTTGCAGGCGTTGGTGGCGCATTACCCGGTTTACCGAACCTACTTCAATGCCTGCGGGCGCCCGGCGCAGGACGAAACGTTCTTCCAGCAGGCCCTGACCAATGCCCGGCAAGACCTTGCCGAAGCTGACTGGCCGc > 6:41358/1‑149 (MQ=255) CGCCGGGCCTTGCAGGCGTTGGTGGCGCATTACCCGGTTTACCGAACCTACTTCAATGCCTGCGGGCGCCCGGCGCAGGACGAAACGTTCTTCCAGCAGGCCCTGACCAATGCCCGGCAAGACCTTGCCGACGCTGACTGGCCGCTACt < 2:173586‑M1/149‑1 (MQ=255) | GCCCGGACTTCCCTGAAGAAGTGCGCCAGGCCCGTCACCTGGTGCTCAACGCCAGCCTGGCCGGTGACTGCGAGTCGGTGGCCCAGGCACTGTTGCAGGTGGCGCGCAACGACCTGATGACCCGTGACCTGACCCTGGGCGCGATTCGCCGGGCCTTGCAGGCGTTGGTGGCGCATTACCCGGTTTACCGAACCTACTTCAATGCCTGCGGGCGCCCGGCGCAGGACGAAACGTTCTTCCAGCAGGCCCTGACCAATGCCCGGCAAGACCTTGCCGAAGCTGACTGGCCGCTACT > NC_002947/4571338‑4571632 |
Alignment Legend |
---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
Reads not counted as support for junction |
read_name Not counted due to insufficient overlap past the breakpoint. |
read_name Not counted due to not crossing MOB target site duplication. |