New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	4571484 =	47 (0.900)	3 (0.060)	3/250	NT	6.3%	coding (1348/2775 nt)	treY	maltooligosyl trehalose synthase
	?	NC_002947	4571559 =	45 (0.920)					coding (1423/2775 nt)	treY	maltooligosyl trehalose synthase

GGTGGCCCAGGCACTGTTGCAGGTGGCGCGCAACGACCTGATGACCCGTGACCTGACCCTGGGCGCGATTCGCCGGGCCTTGCAGGCGTTGGTGGCGCATTACCCGGTTTACCGAACCTACTTCAATGCCTGCGGGCGCCCGGCGCAGGACGAAACGTTCTTCCAGCAGGCCCTGACCAATGCCCGGCAAGACCTTGCCGAAGCTGACTGGCCGCTACTGGACCAACTTGAACGGTGGCTGGGCGGGCAAGCCTGGCGGCATCTGCCACCGGGGCGCGCCCGCAAGCAA  >  NC_002947/4571414‑4571702                                                                                                                                                  |                                                                                                                                                gcggccagtcagcttcggcaaggtcttgccgggcattggtcagggcctgctggaagaacgtttcgtcctgCGCCGGGCCTTGCAGGCGTTGGTGGCGCATTACCCGGTTTACCGAACCTACTTCAATGCCTGCGGGCGCCCGGCGCAg                                                                                                                                               >  8:297890‑M1/71‑148 (MQ=255)  gTGGCCCAGGCACTGTTGCAGGTGGCGCGCAACGACCTGATGACCCGTGACCTGACCCTGGGCGCGATTCGCCGGGCCTTGCAGGCGTTGGTGGCGCATTACCCGGTTTACCGAACCTACTTCAATGCCTGCGGGCGCCCGGCGCAGGa                                                                                                                                             <  2:235101/149‑1 (MQ=255)  cggccagtcagcttcggcaaggtcttgccgggcattggtcagggcctgctggaagaacgtttcgtcctgCGCCGGGCCTTGCAGGCGTTGGTGGCGCATTACCCGGTTTACCGAACCTACTTCAATGCCTGCGGGCGCCCGGCGCAGGa                                                                                                                                             >  5:304385‑M1/70‑149 (MQ=255)     gCCCAGGCACTGTTGCAGGTGGCGCGCAACGACCTGATGACCCGTGACCTGACCCTGGGCGCGATTCGCCGGGCCTTGCAGGCGTTGGTGGCGCATTACCCGGTTTACCGAACCTACTTCAATGCCTGCGGGCGCCCGGCGCAGGACg                                                                                                                                           >  3:179767/1‑148 (MQ=255)           gCACTGTTGCAGGTGGCGCGCAACGACCTGATGACCCGTGACCTGACCCTGGGCGCGATTCGCCGGGCCTTGCAGGCGTTGGTGGCGCATTACCCGGTTTACCGAACCTACTTCAATGCCTGCGGGCGCCCGGCGCAGGACGAAACGtt                                                                                                                                    <  6:103617/149‑1 (MQ=255)               tGTTGCAGGTCGCGCGCAAGGACCTGATGAGCCGTGAGCTGAGCCTGGGCGCGATTCGCCGGGCCTTGCAGGCGTTGGTGGCGCATTACCCGGTTTACCGAACCTACTTCTATGCCTGCGGGCGCCCGGCGCAGGACGAAACGttcttc                                                                                                                                <  3:121906/149‑1 (MQ=255)                    cAGGTGGCGCGCAACGACCTGATGACCCGTGACCTGACCCTGGGCGCGATTCGCCGGGCCTTGCAGGCGTTGGTGGCGCATTGCCCGGTTTACCGAACCTACTTCAATGCCTGCGGGCGCCCGGCGCAGGACGAAACGTTCTTCcag                                                                                                                             >  4:85834/1‑147 (MQ=255)                      ggTGGCGCGCAACGACCTGATGACCCGTGACCTGACCCTGGGCGCGATTCGCCGGGCCTTGCAGGCGTTGGTGGCGCATTACCCGGTTTACCGAACCTACTTCAATGCCTGCGGGCGCCCGGCGCAGGACGAAACGTTCTTCCAGCAgg                                                                                                                         >  8:224320/1‑149 (MQ=255)                          gcgcgcAACGACCTGATGACCCGTGACCTGACCCTGGGCGCGATTCGCCGGGCCTTGCAGGCGTTGGTGGCGCATTACCCGGTTTACCGAACCTACTTCAATGCCTGCGGGCGCCCGGCGCAGGACGAAACGTTCTTCCAGCAGGCCCt                                                                                                                     <  7:224320/149‑1 (MQ=255)                            gcgcAACGACCTGATGACCCGTGACCTGACCCTGGGCGCGATTCGCCGGGCCTTGCAGGCGTTGGTGGCGCATTACCCGGTTTACCGAACCTACTTCAATGCCTGCGGGCGCCCGGCGCAGGACGAAACGTTCTTCCAGCAGGCCCTGa                                                                                                                   <  4:35111/149‑1 (MQ=255)                            gcgcAACGACCTGATGACCCGTGACCTGACCCTGGGCGCGATTCGCCGGGCCTTGCAGGCGTTGGTGGCGCATTACCCGGTTTACCGAACCTACTTCAATGCCTGCGGGCGCCCGGCGCAGGACGAAACGTTCTTCCAGCAGGCCCTGa                                                                                                                   <  3:135213/149‑1 (MQ=255)                                 aCGACCTGATGACCCGTGACCTGACCCTGGGCGCGATTCGCCGGGCCTTGCAGGCGTTGGTGGCGCATTACCCGGTTTACCGAACCTACTTCAATGCCTGCGGGCGCCCGGCGCAGGACGAAACGTTCTTCCAGCAGGCCCTGACCAAt                                                                                                              <  6:89859/149‑1 (MQ=255)                                     ccTGATGACCCGTGACCTGACCCTGGGCGCGATTCGCCGGGCCTTGCAGGCGTTGGTGGCGCATTTCCCGGTTTACCGAACCTACTTCAATGCCTGCGGGCGCCCGGCGCAGGACGAAACGTTCTTCCAGCAGGCCCTGACCAATGccc                                                                                                          <  3:85834/149‑1 (MQ=255)                                         atgaCCCGTGACCTGACCCTGGGCGCGATTCGCCGGGCCTTGCAGGCGTTGGTGGCGCATTACCCGGTTTACCGAACCTACTTCAATGCCTGCGGGCGCCCGGCGCAGGACGAAACGTTCTTCCAGCAGGCCCTGACCAATGCCCgg                                                                                                        <  5:222179/147‑1 (MQ=255)                                          tgaCCCGTGACCTGACCCTGGGCGCGATTCGCCGGGCCTTGCAGGCGTTGGTGGCGCATTACCCGGTTTACCGAACCTACTTCAATGCCTGCGGGCGCCCGGCGCAGGACGAAACGTTCTTCCAGCAGGCCCTGACCAATGCCCGGCaa                                                                                                     <  1:188279/149‑1 (MQ=255)                                             cccGTGACCTGACCCTGGGCGCGATTCGCCGGGCCTTGCAGGCGTTGGTGGCGCATTACCCGGTTTACCGAACCTACTTCAATGCCTGCGGGCGCCCGGCGCAGGACGAAACGTTCTTCCAGCAGGCCCTGACCAATGCCCGGCAAGAc                                                                                                  >  1:16113/1‑149 (MQ=255)                                              ccGTGACCTGACCCTGGGCGCGATTCGCCGGGCCTTGCAGGCGTTGGTGGCGCATTACCCGGTTTACCGAACCTACTTCAATGCCTGCGGGCGCCCGGCGCAGGACGAAACGTTCTTCCAGCAGGCCCTGACCAATGCCCGGCAAGAcc                                                                                                 <  7:23110/149‑1 (MQ=255)                                                    cctgaccCTGGGCGCGATTCGCCGGGCCTTGCAGGCGTTGGTGGCGCATTACCCGGTTTACCGAACCTACTTCAATGCCTGCGGGCGCCCGGCGCAGGACGAAACGTTCTTCCAGCAGGCCCTGACCAATGCCCGGCAAGACCTTGcc                                                                                            >  5:106567/1‑148 (MQ=255)                                                        accCTGGGCGCGATTCGCCGGGCCTTGCAGGCGTTGGTGGCGCATTACCCGGTTTACCGAACCTACTTCAATGCCTGCGGGCGCCCGGCGCAGGACGAAACGTTCTTCCAGCAGGCCCTGACCAATGCCCGGCAAGACCTTGCCGaa                                                                                         <  2:126883/147‑1 (MQ=255)                                                           cTGGGCGCGATTCGCCGGGCCTTGCAGGCGTTGGTGGCGCATTACCCGGTTTACCGAACCTACTTCAATGCCTGCGGGCGCCCGGCGCAGGACGAAACGTTCTTCCAGCAGGCCCTGACCAATGCCCGGCAAGACCTTGCCGAAGCTGa                                                                                    <  2:314659/149‑1 (MQ=255)                                                                  tcctgcgccgggcgcccgcaggcattgaagtaggttcggtaaaccgggtaatgcgccaccaacgcctgcaaggcccggcgCAGGACGAAACGTTCTTCCAGCAGGCCCTGACCAATGCCCGGCAAGACCTTGCCGAAGCTGACTGGCCg                                                                             >  5:304385‑M2/81‑149 (MQ=255)                                                                  cgATTCGCCGGGCCTTGCAGGCGTTGGTGGCGCATTACCCGGTTTACCGAACCTACTTCAATGCCTGCGGGCGCCCGGCGCAGGACGAAACGTTCTTCCAGCAGGCCCTGACCAATGCCCGGCAAGACCTTGCCGAAGCTGACTGGCCg                                                                             <  7:31982/149‑1 (MQ=255)                                                                  cgATTCGCCGGGCCTTGCAGGCGTTGGTGGCGCATTACCCGGTTTACCGAACCTACTTCAATGCCTGCGGGCGCCCGGCGCAGGACGAAACGTTCTTCCAGCAGGCCCTGACCAATGCCCGGCAAGACCTTGCCGAAGCTGACTGGCCg                                                                             <  2:16113/149‑1 (MQ=255)                                                                   gATTCGCCGGGCCTTGCAGGCGTTGGTGGCGCATTACCCGGTTTACCGAACCTACTTCAATGCCTGCGGGCGCCCGGCGCAGGACGAAACGTTCTTCCAGCAGGCCCTGACCAATGCCCGGCAAGACCTTGCCGAAGCTGACTGGCCGc                                                                            >  6:41358/1‑149 (MQ=255)                                                                    ctgcgccgggcgcccgcaggcattgaagtaggttcggtaaaccgggtaatgcgccaccaacgcctgcaaggcccggcgCAGGACGAAACGTTCTTCCAGCAGGCCCTGACCAATGCCCGGCAAGACCTTGCCGAAGCTGACTGGCCGc                                                                            >  8:297890‑M2/79‑148 (MQ=255)                                                                       CGCCGGGCCTTGCAGGCGTTGGTGGCGCATTACCCGGTTTACCGAACCTACTTCAATGCCTGCGGGCGCCCGGCGCAGGACGAAACGTTCTTCCAGCAGGCCCTGACCAATGCCCGGCAAGACCTTGCCGACGCTGACTGGCCGCTACt                                                                        <  2:173586‑M1/149‑1 (MQ=255)                                                                         CCGGGCCTTGCAGGCGTTGGTGGCGCATTACCCGGTTTACCGAACCTACTTCAATGCCTGCGGGCGCCCGGCGCAGGACGAAACGTTCTTCcagca                                                                                                                           <  6:41385‑M1/96‑1 (MQ=255)                                                                          CGGGCCTTGCAGGCGTTGGTGGCGCATTACCCGGTTTACCGAACCTACTTCAATGCCTGCGGGCGCCCGGCGCAGGACGAAACGTTCTTCCAGCAGGCCCTGACCAATGCCCGGCAAGACCTTGCCGAAGCTGACTGGCCGCTACTGGa                                                                     <  2:20245‑M1/149‑1 (MQ=255)                                                                                  gCAGGCGTTGGTGGCGCATTACCCGGTTTACCGAACCTACTTCAATGCCTGCGGGCGCCCGGCGCAGGACGAAACGTTCTTCCAGCAGGCCCTGACCAATGCCCGGCAAGACCTTGCCGAAGCTGACTGGCCGCTACTGGACCAACtt                                                              <  4:179767/148‑1 (MQ=255)                                                                                        gTTGGTGGCGCATTACCCGGTTTACCGAACCTACTTCAATGCCTGCGGGCGCCCGGCGCAGGACGAAACGTTCTTCCAGCAGGCCCTGACCAATGCCCGGCAAGACCTTGCCGAAGCTGACTg                                                                                 <  4:269946/123‑1 (MQ=255)                                                                                        gTTGGTGGCGCATTACCCGGTTTACCGAACCTACTTCAATGCCTGCGGGCGCCCGGCGCAGGACGAAACGTTCTTCCAGCAGGCCCTGACCAATGCCCGGCAAGACCTTGCCGAAGCTGACTg                                                                                 >  3:269946/1‑123 (MQ=255)                                                                                           ggtggCGCATTACCCGGTTTACCGAACCTACTTCAATGCCTGCGGGCGCCCGGCGCAGGACGAAACGTTCTTCCAGCAGGCCCTGACCAATGCCCGGCAAGACCTTGCCGAAGCTGACTGGCCGCTACTGGACCAACTTGAACGGTgg                                                     <  4:23272/148‑1 (MQ=255)                                                                                            gtggCGCATTACCCGGTTTACCGAACCTACTTCAATTCCTGAGGGCGCCAGGCGCAGGCAGAAAAGTGCTTCCATCAGGGCCTGACCAATGCACGGCAAGAGATGTCCGAAGCGGAAGGGCCGCTACTTGCCCAACTTGAACGTTGTCt                                                   >  6:168898/1‑149 (MQ=255)                                                                                              agtaggttcggtaaaccgggtaatgcgccaccaacgcctgcaaggcccggcgCAGGACGAAACGTTCTTCCAGCAGGCCCTGACCAATGCCCGGCAAGACCTTGCCGAAGCTGACTGGCCGCTACTGGACCAACTTGAACGGTGGCTgg                                                 <  6:304385‑M2/97‑1 (MQ=255)                                                                                                   aTTACCCGGTTTACCGAACCTACTTCAATGCCTGCGGGCGCCCGGCGCAGGACGAAACGTTCTTCCAGCAGGCCCTGACCAATGCCCGGCAAGACCTTGCCGAAGCTGACTGGCCGCTACTGGACCAACTTGAACGGTGGCTgggcggg                                            >  3:304340/1‑149 (MQ=255)                                                                                                    ttACCCGGTTTACCGAACCTACTTCAATGCCTGCGGGCGCCCGGCGCAGGACGAAACGTTCTTCCAGCAGGCCCTGACCAATGCCCGGCAAGACCTTGCCGAAGCTGACTGGCCGCTACTGGACCAACTTGAACGGTGGCTgggcggg                                            >  3:56108/1‑148 (MQ=255)                                                                                                       cccGGTTTACCGAACCTACTTCAATGCCTGCGGGCGCCCGGCGCAGGACGAAACGTTCTTCCAGCAGGCCCTGACCAATGCCCGGCAAGACCTTGCCGAAGCTGACTGGCCGCTACTGGACCAACTTGAACGGTGGCTGGGCGGGCaa                                         <  6:106567/148‑1 (MQ=255)                                                                                                       cccGGTTTACCGAACCTACTTCAATGCCTGCGGGCGCCCGGCGCAGGACGAAACGTTCTTCCAGCAGGCCCTGACCAATGCCCGGCAAGACCTTGCCGAAGCTGACTGGCCGCTACTGGACCAACTTGAACGGTGGCTGGGCGGGCAAg                                        >  8:302822/1‑149 (MQ=255)                                                                                                        ccGGTTTACCGAACCTACTTCAATGCCTGCGGGCGCCCGGCGCAGGACGAAACGTTCTTCCAGCAGGCCCTGACCAATGCCCGGCAAGACCTTGCCGAAGCTGACTGGCCGCTACTGGACCAACTTGAACGGTGGCTGGGCGGGCAAGc                                       >  1:128356/1‑149 (MQ=255)                                                                                                              tACCGAACCTACTTCAATGCCTGCGGGCGCCCGGCGCAGGACGAAACGTTCTTCCAGCAGGCCCTGACCAATGCCCGGCAAGACCTTGCCGAAGCTGACTGGCCGCTACTGGACCAACTTGAACGGTGGCTGGGCGGGCAAGCCTggc                                  <  1:273977/148‑1 (MQ=255)                                                                                                               aCCGAACCTACTTCAATGCCTGCGGGCGCCCGGCGCAGGACGAAACGTTCTTCCAGCAGGCCCTGACCAATGCCCGGCAAGACCTTGCCGAAGCTGACTGGCCGCTACTGGACCaa                                                                 <  4:60845/116‑1 (MQ=255)                                                                                                               aCCGAACCTACTTCAATGCCTGCGGGCGCCCGGCGCAGGACGAAACGTTCTTCCAGCAGGCCCTGACCAATGCCCGGCAAGACCTTGCCGAAGCTGACTGGCCGCTACTGGACCaa                                                                 >  3:60845/1‑116 (MQ=255)                                                                                                                    aCCTACTTCAATGCCTGCGGGCGCCCGGCGCAGGACGAAACGTTCTTCCAGCAGGCCCTGACCAATGCCCGGCAAGACCTTGCCGAAGCTGACTGGCCGCTACTGGACCAACTTGAACGGTGGCTGGGCGGGCAAGCCTGGCGGCATCt                           <  4:56108/149‑1 (MQ=255)                                                                                                                    aCCTACTTCAATGCCTGCGGGCGCCCGGCGCAGGACGAAACGTTCTTCCAGCAGGCCCTGACCAATGCCCGGCAAGACCTTGCCGAAGCTGACTGGCCGCTACTGGACCAACTTGAACGGTGGCTGGGCGGGCAAGCCTGGCGGCATCt                           <  1:43374/149‑1 (MQ=255)                                                                                                                       tACTTCAATGCCTGCGGGCGCCCGGCGCAGGACGATACGTTCTTCCAGCAGGCCCTGACCAATGCCCGGCAAGACCTTGCCGAAGCTGACTGGCCGCTACTGGACCAACTTGAACGGTGGCTGGGCGGGCAAGCCTGGCGGCATCTGcc                        >  5:66365/1‑149 (MQ=255)                                                                                                                       tACTTCAATGCCTGCGGGCACCCGGCGCAGGACGAAACGTTCTTCCAGCAGGCCCTGACCAATGCCCGGCAAGACCTTGCCGAAGCTGACTGGCCGCTACTGGACCAACTTGAACGGTg                                                      <  4:186571/119‑1 (MQ=255)                                                                                                                       tACTTCAATGCCTGCGGGCACCCGGCGCAGGACGAAACGTTCTTCCAGCAGGCCCTGACCAATGCCCGGCAAGACCTTGCCGAAGCTGACTGGCCGCTACTGGACCAACTTGAACGGTg                                                      >  3:186571/1‑119 (MQ=255)                                                                                                                         cTTCAATGCCTGCGGGCGCCCGGCGCAGGACGAAACGTTCTTCCAGCAGGCCCTGACCAATGCCCGGCAAGACCTTGCCGAAGCTGACTGGCCGCTACTGGACCAACTTGAACGGTGGCTGGGCGGGCAAGCCTGGCGGCATCTGcc                        <  5:41358/147‑1 (MQ=255)                                                                                                                          ttCAATGCCTGCGGGCGCCCGGCGCAGGACGAAACGTTCTTCCAGCAGGCCCTGACCAATGCCCGGCAAGACCTTGCCGAAGCTGACTGGCCGCTACTGGACCAACTTGAACGGTGGCTGGGCGGGCAAGCCTGGCGGCATCTGCCAcc                     >  3:126296/1‑149 (MQ=255)                                                                                                                            cAATGCCTGCGGGCGCCCGGCGCAGGACGAAACGTTCTTCCAGCAGGCCCTGACCAATGCCCGGCAAGACCTTGCCGAAGCTGACTGGCCGCTACTGGACCAACTTGAACGGTGGCTGGGCGGGCAAGCCTGGTGGCAGATgccgcca                    <  7:302822/148‑2 (MQ=255)                                                                                                                             aaTGCCTGCGGGCGCCCGGCGCAGGACGAAACGTTCTTCCAGCAGGCCCTGACCAATGCCCGGCAAGACCTTGCCGAAGCTGACTGGCCGCTACTGGACCAACTTGAACGGTGGCTGGGCGGGCAAGCCTGGCGGCATCTGCCACCggg                  >  4:293076/1‑149 (MQ=255)                                                                                                                              aTGCCTGCGGGCGCCCGGCGCAGGACGAAACGTTCTTCCAGCAGGCCCTGACCAATGCCCGGCAAGACCTTGCCGAAGCTGACTGGCCGCTACTGGACCAACTTGAACGGTGGCTGGGCGGGCAAGCCTGGCGGCATCTGCCACCgggg                 <  2:159767/149‑1 (MQ=255)                                                                                                                                    gCGGGCGCCCGGCGCAGGACGAAACGTTCTTCCAGCAGGCCCTGACCAATGCCCGGCAAGACCTTGCCGAAGCTGACTGGCCGCTACTGGACCAACTTGAACGGTGGCTGGGCGGGCAAGCCTGGCGGCATCTGCCACCGGGGCGCGcc           >  4:127106/1‑149 (MQ=255)                                                                                                                                    gCGGGCGCCCGGCGCAGGACGAAACGTTCTTCCAGCAGGCCCTGACCAATGCCCGGCAAGACCTTGCCGAAGCTGACTGGCCGCTACTGGACCAACTTGAACGGTGGCTGGGCGGGCAAGCCTGGCGGCATCTGCCACCGGGGCGCGcc           >  3:177368/1‑149 (MQ=255)                                                                                                                                          gcccggcgCAGGACGAAACGTTCTTCCAGCAGGCCCTGACCAATGCCCGGCAAGACCTTGCCGAAGCTGACTGGCCGCTACTGGACCAACTTGAACGGTGGCTGGGCGGGCAAGCCTGGCGGCATCTGCCACCggg                  <  2:6393‑M2/128‑1 (MQ=255)                                                                                                                                          gcccggcgCAGGACGAAACGTTCTTCCAGCAGGCCCTGACCAATGCCCGGCAAGACCTTGCCGAAGCTGACTGGCCGCTACTGGACCAACTTGAACGGTGGCTGGGCGGGCAAGCCTGGCGGCATCTGCCACCggg                  >  1:6393‑M2/9‑136 (MQ=255)                                                                                                                                             cggcgCAGGACGAAACGTTCTTCCAGCAGGCCCTGACCAATGCCCGGCAAGACCTTGCCGAAGCTGACTGGCCGCTACTGGACCAACTTGAACGGTGGCTGGGCGGGCAAGCCTGGCGGCATCTGCCACCGGGGCGCGCCCgcaagcaa  <  4:126296‑M2/144‑1 (MQ=255)                                                                                                                                                  |                                                                                                                                                GGTGGCCCAGGCACTGTTGCAGGTGGCGCGCAACGACCTGATGACCCGTGACCTGACCCTGGGCGCGATTCGCCGGGCCTTGCAGGCGTTGGTGGCGCATTACCCGGTTTACCGAACCTACTTCAATGCCTGCGGGCGCCCGGCGCAGGACGAAACGTTCTTCCAGCAGGCCCTGACCAATGCCCGGCAAGACCTTGCCGAAGCTGACTGGCCGCTACTGGACCAACTTGAACGGTGGCTGGGCGGGCAAGCCTGGCGGCATCTGCCACCGGGGCGCGCCCGCAAGCAA  >  NC_002947/4571414‑4571702

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.