| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_002947 | = 5164208 | 76 (1.460) | 4 (0.080) | 4/258 | NT | 5.3% | coding (3672/3906 nt) | hrpA | ATP‑dependent helicase HrpA |
| ? | NC_002947 | = 5164246 | 69 (1.370) | coding (3634/3906 nt) | hrpA | ATP‑dependent helicase HrpA | |||||
TCGATATTCTTCCAGCCACCAGCGGTACACGGTCAGTTGCTCATCGCGCTTGCCTTCCTGGGCATGCTTGTCGGCACGGGCCTTGTACTGCGCCCACAGGTTGGCCAATTCGCCGCTCCACACCCGGTCCTTCTGTACTTGCGAGCCG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_002947/5164061‑5164208‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gccgCGTTACCTCAAGGCGGTTGAATTGCGCCTCGAGAAACTCGGCTCGCAAGTACAGAAGGACCGGGTGTGGAGCGGCGAATTGGCCAACCTGTGGGCGCAGTACAAGGCCCGTGCCGACAAGCATGCCCAGGAAGGCAAGCGCGATGA < NC_002947/5164246‑5164101 TCGATATTCTTCCAGCCACCAGCGGTACACGGTCAGTTGCTCATCGCGCTTGCCTTCCTGGGCATGCTTGTCGGCACGGGCCTTGTACTGCGCCCACAGGTTGGCCAATTCGCCGCTCCACACCCGGTCCTTCTGTACTTGCGAGCC > 3:189200/1‑147TCGATATTCTTCCAGCCACCAGCGGTACACGGTCAGTTGCTCATCGCGCTTGCCTTCCTGGGCATGCTTGTCGGCACGGGCCTTGTACTGCGCCCACAGGTTGGCCAATTCGCCGCTCCACACCCGGTCCTTCTGTACTTGCGAGCC > 4:163829/1‑147 ATCGCGCTTGCCTTCCTGGGCATGCTTGTCGGCACGGGCCTTGTACTGCTCCCACAGGTTGGCCAATTCCCCGCTCCACACCCGGTCCTTCTGTACTTGCGAGCCGAGTT‑TCTCAAGGCGGTTGAATTGCGCCTCGAGAAACTCGGC < 1:104058/147‑1 CTTGCCTTCCTGGGCATGCTTGTCGGCACGGGCCTTGTACTGCGCCCACAGGTTGGCCAATTCGCCGCTCCACACCCGGTCCTTCTGTACTTGCGAGCCGCGTTACCTCAAGGCGGTTGAATTGCGCCTCGAGAAACTCGGCTCGCAAG < 5:131944/149‑1 CTTCCTGGGCATGCTTGTCGGCACGGGCCTTGTACTGCGCCCACAGGTTGGCCAATTCGCCGCTCCACACCCGGTCCTTCTGTACTTGCGAGCCGCGTTACCTCAAGGCGGTTGAATTGCGCCTCGAGAAACTCGGCTCGCAA > 3:41074/1‑143 CTTCCTGGGCATGCTTGTCGGCACGGGCCTTGTACTGCGCCCACAGGTTGGCCAATTCGCCGCTCCACACCCGGTCCTTCTGTACTTGCGAGCCGCGTTACCTCAAGGCGGTTGAATTGCGCCTCGAGAAACTCGGCTCGCAA < 4:41074/143‑1 CCGCGTTACCTCAAGGCGGTTGAATTGCGCCTCGAGAAACTCGGCTCGCAAGTACAGAAGGACCGGGTGTGGAGCGGCGAATTGGCCAACCTGTGGGCGCAGTACAAGGCCCGTGCCGACAAGCATGCCCAGGAAGGCAAGCGCGATGA < 4:258036/149‑1 TCGATATTCTTCCAGCCACCAGCGGTACACGGTCAGTTGCTCATCGCGCTTGCCTTCCTGGGCATGCTTGTCGGCACGGGCCTTGTACTGCGCCCACAGGTTGGCCAATTCGCCGCTCCACACCCGGTCCTTCTGTACTTGCGAGCCG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_002947/5164061‑5164208‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gccgCGTTACCTCAAGGCGGTTGAATTGCGCCTCGAGAAACTCGGCTCGCAAGTACAGAAGGACCGGGTGTGGAGCGGCGAATTGGCCAACCTGTGGGCGCAGTACAAGGCCCGTGCCGACAAGCATGCCCAGGAAGGCAAGCGCGATGA < NC_002947/5164246‑5164101 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |