New junction evidence | |||||||||||
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seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
* | ? | NC_002947 | = 5291886 | 53 (1.020) | 3 (0.060) | 3/252 | NT | 6.2% | intergenic (+116/+76) | PP_4665/mmsB | hypothetical protein/3‑hydroxyisobutyrate dehydrogenase |
? | NC_002947 | = 5291937 | 41 (0.830) | intergenic (+167/+25) | PP_4665/mmsB | hypothetical protein/3‑hydroxyisobutyrate dehydrogenase |
GTGGTCGAGACTGTACGTAAGTATTTCGTCTTCGCCTGACTTGCAGGCGCGGGTTTACCTGCTAATGCGGCGGTGAGGCTTCTGTAGCATTCGCGGGTGAACCCGCTCCTACCACGGCCGCGCACTACCTGTAAGCGTGGACAAAAAAATCGCGG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_002947/5291732‑5291886 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑atcgcggGCCAGGTGGCCTTCCCTCTGTAACTGCGCACCAGAGGGAAGGGCGTCTGCTCCGCGATTTTTTTGTCCACGCTTACAGGTAGTGCGCGGCCGTGGTAGGAGCGGGTTCACCCGCGAATGCTACAGAAGCCTCACCGCCGCATTAGCAG < NC_002947/5291937‑5291790 GTGGTCGAGACTGTACGTAAGTATTTCGTCTTCGCCTGACTTGCAGGCGCGGGTTTACCTGCTAATGCGGCGGTGAGGCTTCTGTAGCATTCGCGGGTGAACCCGCTCCTACCACGGCCGCGCACTACCTGTAAGCGTGGACAAAAAAA < 8:119786/149‑1 TGGTCGAGACTGTACGTAAGTATTTCGTCTTCGCCTGACTTGCAGGCGCGGGTTTACCTGCTAATGCGGCGGTGAGGCTTCTGTAGCATTCGCGGGTGAACCCGCTCCTACCACGGCCGCGCACTACCTGTAAGCGTGGACAAAAAAA > 4:168632/1‑148 GTCGAGACTGTACGTAAGTATTTCGTCTTCGCCTGACTTGCAGGCGCGGGTTTATCTGCTAATGCGGCGGTGAGGCTTCTGTAGCATTCGCGGGTGAACCCGCTCCTACCACGGCCGCGCACTACCTGTAAGCGTGGACAAAAAAATCG > 5:228081/1‑149 GTCGAGACTGTACGTAAGTATTTCGTCTTCGCCTGACTTGCAGGCGCGGGTTTACCTGCTAATGCGGCGGTGAGGCTTCTGTAGCATTCGCGGGTGAACCCGCTCCTACCACGGCCGCGCACTACCTGTAAGCGTGGACAAAAAAATCG > 3:179829/1‑149 CTGCTAATGCGGCGGTGAGGCTTCTGTAGCATTCGCGGGTGAACCCGCTCCTACCACGGCCGCGCACTACCTGTAAGCGTGGACAAAAAAATCGCGGGCCAGGTGGCCTTCCCTCTGTAACTGCGCACCAGAGGGAAGGGCGTCTGCTC > 1:145502/1‑149 CTAATGCGGCGGTGAGGCTTCTGTAGCATTCGCGGGTGAACCCGCTCCTACCACGGCCGCGCACTACCTGTAAGCGTGGACAAAAAAATCGCGGGCCAGGTGGCCTTCCCTCTGTAACTGCGCACCAGAGGGAAGGGCGTCTGCTCCGC < 3:168632/149‑1 ATGCGGCGGTGAGGCTTCTGTAGCATTCGCGGGTGAACCCGCTCCTACCACGGCCGCGCACTACCTGTAAGCGTGGACAAAAAAATCGCGGGCCAGGTGGCCTTCCCTCTGTAACTGCGCACCAGAGGGAAGGGCGTCTGCTCCGCGA < 2:145502/148‑1 GGCCAGGTGGCCTTCCCTCTGTAACTGCGCACCAGAGGGAAGGGCGTCTGCTCCGCGATTTTTTTGTCCACGCTTACAGGTAGTGCGCGGCCGTGGTAGGAGCGGGTTCACCCGCGAATGCTACAGAAGCCTCACCGCCGCATTAGCAG < 6:174928/149‑1 GGCCAGGTGGCCTTCCCTCTGTAACTGCGCACCAGAGGGAAGGGCGTCTGCTCCGCGATTTTTTTGTCCACGCTTACAGGTAGTGCGCAGCCGTGGTAGGAGCGGGTTCACCCGCGAATGCTACAGAAGCCTCACCGCCGCATTAGCAG < 8:222882/149‑1 GTGGTCGAGACTGTACGTAAGTATTTCGTCTTCGCCTGACTTGCAGGCGCGGGTTTACCTGCTAATGCGGCGGTGAGGCTTCTGTAGCATTCGCGGGTGAACCCGCTCCTACCACGGCCGCGCACTACCTGTAAGCGTGGACAAAAAAATCGCGG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_002947/5291732‑5291886 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑atcgcggGCCAGGTGGCCTTCCCTCTGTAACTGCGCACCAGAGGGAAGGGCGTCTGCTCCGCGATTTTTTTGTCCACGCTTACAGGTAGTGCGCGGCCGTGGTAGGAGCGGGTTCACCCGCGAATGCTACAGAAGCCTCACCGCCGCATTAGCAG < NC_002947/5291937‑5291790 |
Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
Reads not counted as support for junction |
read_name Not counted due to insufficient overlap past the breakpoint. |
read_name Not counted due to not crossing MOB target site duplication. |