New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 5291886	53 (1.020)	3 (0.060)	3/252	NT	6.2%	intergenic (+116/+76)	PP_4665/mmsB	hypothetical protein/3‑hydroxyisobutyrate dehydrogenase
	?	NC_002947	= 5291937	41 (0.830)					intergenic (+167/+25)	PP_4665/mmsB	hypothetical protein/3‑hydroxyisobutyrate dehydrogenase

CTGCTAATGCGGCGGTGAGGCTTCTGTAGCATTCGCGGGTGAACCCGCTCCTACCACGGCCGCGCACTACCTGTAAGCGTGGACAAAAAAATCGCGGAGCAGA‑CGC‑CCTTCCCTCTGGTGCGCAGTTACAGAGGGAAGGCCACCTGGCCCGCGATGAAGTCCACCTCTTGCATCAATCCTTCTTGCGATAACCCTCGACGATGGCCGAGAAGTCCTTGCCACCCTCGCCTCGCAGGCTCATGGCCTGGTACAGCTGCTGGGCCACGGCACCGAGAATCACCGGTTGGTGTGCCT  >  NC_002947/5291790‑5292083                                                                                                                                                      |                                                                                                                                                   cTGCTAATGCGGCGGTGAGGCTTCTGTAGCATTCGCGGGTGAACCCGCTCCTACCACGGCTGCGCACTACCTGTAAGCGTGGACAAAAAAATCGCGGAGCAGA‑CGC‑CCTTCCCTCTGGTGCGCAGTTACAGAGGGAAGGCCACCTGGCc                                                                                                                                                   <  8:222882‑M2/149‑2 (MQ=255) cTGCTAATGCGGCGGTGAGGCTTCTGTAGCATTCGCGGGTGAACCCGCTCCTACCACGGCCGCGCACTACCTGTAAGCGTGGACAAAAAAATCGCGGAGCAGA‑CGC‑CCTTCCCTCTGGTGCGCAGTTACAGAGGGAAGGCCACCTGGCc                                                                                                                                                   <  6:174928‑M2/149‑2 (MQ=255)  tGCTAATGCGGCGGTGAGGCTTCTGTAGCATTCGCGGGTGAACCCGCTCCTACCACGGCCGCGCACTACCTGTAAGCGTGGACAAAAAAATCGCGGAGCAGA‑CGC‑CCTTCCCTCTGGTGCGCAGTTACAGAGGGAAGGCCACCTGGc                                                                                                                                                    >  5:10885/1‑147 (MQ=255)  tGCTAATGCGGCGGTGAGGCTTCTGTAGCATTCGCGGGTGAACCCGCTCCTACCACGGCCGCGCACTACCTGTAAGCGTGGACAAAAAAATCGCGGAGCAGA‑CGC‑CCTTCCCTCTGGTGCGCAGTTACAGAGGGAAGGCCACCTGGc                                                                                                                                                    <  6:10885/147‑1 (MQ=255)          cggcggTGAGGCTTCTGTAGCATTCGCGTGTGAACCCGCTCCTACCACGGCCACGCACTACCTGTAAGCGTGGACAAAAAAATCGCGGAGCAGA‑CGC‑CCTTCCCTCTGGTGCGCAGTTACAGAGGGAAGGCCACCTGGCCCGCGATGaa                                                                                                                                          <  3:171861/149‑1 (MQ=255)            gcggTGAGGCTTCTGTAGCATTCGCGGGTGAACCCGCTCCTACCACGGCCGCGCACTACCTGTAAGCGTGGACAAAAAAATCGCGGAGCAGA‑CGC‑CCTTCCCTCTGGTGCGCAGTTACAGAGGGAAGGCCACCTGGCCCGCGATGAAGt                                                                                                                                        <  2:22674/149‑1 (MQ=255)                     cTTCTGTAGCATTCGCGGGTGAACCCGCTCCTACCACGGCCGCGCACTACCTGTAAGCGTGGACAAAAAAATCGCGGAGCAGA‑CGC‑CCTTCCCTCTGGTGCGCAGTTACAGAGGGAAGGCCACCTGGCCCGCGATGAAGTCCACCTCtt                                                                                                                               <  5:258682/149‑1 (MQ=255)                     cTTCTGTAGCATTCGCGGGTGAACCCGCTCCTACCACGGCCGCGCACTACCTGTAAGCGTGGACAAAAAAATCGCGGAGCAGA‑CGC‑CCTTCCCTCTGGTGCGCAGTTACAGAGGGAAGGCCACCTGGCCCGCGATGAAGTCCACCTCtt                                                                                                                               <  1:65390/149‑1 (MQ=255)                      ttCTGTAGCATTCGCGGGTGAACCCGCTCCTACCACGGCCGCGCACTACCTGTAAGCGTGGACAAAAAAATCGCGGAGCAGA‑CGC‑CCTTCCCTCTGGTGCGCAGTTACAGAGGGAAGGCCACCTGGCCCGCGATGAAGTCCACCTCtt                                                                                                                               >  2:65390/1‑148 (MQ=255)                           tAGCATTCGCGGGTGAACCCGCTCCTACCACGGCCGCGCACTACCTGTAAGCGTGGACAAAAAAATCGCGGAGCAGA‑CGC‑CCTTCCCTCTGGTGCGCAGTTACAGAGGGAAGGCCACCTGGCCCGCGATGAAGTCCACCTCtt                                                                                                                               <  6:97052/143‑1 (MQ=255)                           tAGCATTCGCGGGTGAACCCGCTCCTACCACGGCCGCGCACTACCTGTAAGCGTGGACAAAAAAATCGCGGAGCAGA‑CGC‑CCTTCCCTCTGGTGCGCAGTTACAGAGGGAAGGCCACCTGGCCCGCGATGAAGTCCACCTCtt                                                                                                                               >  5:97052/1‑143 (MQ=255)                              cATTCGCGGGTGAACCCGCTCCTACCACGGCCGCGCACTACCTGTAAGCGTGGACAAAAAAATCGCGGAGCAGA‑CGC‑CCTTCCCTCTTGTGCGCAGTTACAGAGGGAAGGCCACCTGGCCCGCGATGAAGTCCACCTCTTGCATCAAt                                                                                                                       <  4:225992/148‑1 (MQ=255)                                ttCGCGGGTGAACCCGCTCCTACCACGGCCGCGCACTACCTGTAAGCGTGGACAAAAAAATCGCGGAGCAGA‑CGC‑CCTTCCCTCTGGTGCGCAGTTACAGAGGGAAGGCCACCTGGCCCGCGATGAAGTCCACCTCTTGCATCAATCct                                                                                                                    >  7:78844/1‑149 (MQ=255)                                ttCGCGGGTGAACCCGCTCCTACCACGGCCGCGCACTACCTGTAAGCGTGGACAAAAAAATCGCGGAGCAGA‑CGC‑CCTTCCCTCTGGTGCGCAGTTACAGAGGGAAGGCCACCTGGCCCGCGATGAAGTCCACCTCTTGCATCAATCct                                                                                                                    >  2:45499/1‑149 (MQ=255)                                   gcgGGTGAACCCGCTCCTACCACGGCCGCGCACTACCTGTAAGCGTGGACAAAAAAATCGCGGAGCAGA‑CGC‑CCTTCCCTCTGGTGCGCAGTTACAGAGGGAAGGCCACCTGGCCCGCGATGAAGTCCACCTCTTGCATCAATCcttc                                                                                                                  <  3:184645/148‑1 (MQ=255)                                    cgGGTGAACCCGCTCCTACCACGGCCGCGCACTACCTGTATTCGTGGACAAAAAAATCGCGGAGCAGA‑CGC‑CCTTCCCTCTGGTGCGCAGTTACAGAGGGAAGGCCACCTGTCCCGCGATGAAGTCCACCTCTTGCATCAATCcttctt                                                                                                                <  7:115109/149‑1 (MQ=255)                                    cgGGTGAACCCGCTCCTACCACGGCCGCGCACTACCTGTAAGCGTGGACAAAAAAATCGCGGAGCAGA‑CGC‑CCTTCCCTCTGGTGCGCAGTTACAGAGGGAAGGCCACCTGGCCCGCGATGAAGTCCACCTCTTGCATCAATCcttctt                                                                                                                <  2:167527/149‑1 (MQ=255)                                       gTGAACCCGCTCCTACCACGGCCGCGCACTACCTGTAAGCGTGGACAAAAAAATCGCGGAGCAGA‑CGC‑CCTTCCCTCTGGTGCGCAGTTACAGAGGGAAGGCCACCTGGCCCGCGATGAAGTCCACCTCTTGAATCAATCCTTCTTGc                                                                                                              >  7:188489/1‑148 (MQ=255)                                        tGAACCCGCTCCTACCACGGCCGCGCACTACCTGTAAGCGTGGACAAAAAAATCGCGGAGCAGA‑CGC‑CCTTCCCTCTGGTGCGCAGTTACAGAGGGAAGGCCACCTGGCCCGCGATGAAGTCCACCTCTTGCATCAATCCTTCTTGCGa                                                                                                            <  5:174928/149‑1 (MQ=255)                                            cccGCTCCTACCACGGCCGCGCACTACCTGTAAGCGTGGACAAAAAAATCGCGGAGCAGA‑CGC‑CCTTCCCTCTGGTGCGCAGTTACAGAGGGAAGGCCACCTGGCCCGCGATGCAGTCCACCTCTTGCATCACTCCTTCTTGCGATAAc                                                                                                        >  8:212224/1‑149 (MQ=255)                                             ccGCTCCTACCACGGCCGCGCACTACCTGTAAGCGTGGACAAAAAAATCGCGGAGCAGA‑CGC‑CCTTCCCTCTGGTGCGCAGTTACAGAGGGAAGGCCACCTGGCCCGCGATGAAGTCCACCTCTTGCATCAATCCTTCTTGCGATAAcc                                                                                                       >  5:235655/1‑149 (MQ=255)                                             ccGCTCCTACCACGGCCGCGCACTACCTGTAAGCGTGGACAAAAAAATCGCGGAGCAGA‑CGC‑CCTTCCCTCTGGTGCGCAGTTACAGAGGGAAGGCCACCTGGCCCGCGATGAAGTCCACCTCTTGCATCAATCCTTCTTGCGATAAcc                                                                                                       >  1:319704/1‑149 (MQ=255)                                                            ccGCTCACTACCTGTAATCGTGGACAAAAAAATCGCGGAGCAGT‑CGC‑CCTTCCCTCTGGTGCGCAGTTACAGAGGGAAGGCCACCTGGCCCGCGATGAAGTCCACCTCTTGCATCAATCCTTCTTGCGATAACCCTCGACGATGGcc                                                                                          <  4:203202/147‑1 (MQ=255)                                                            ccGCGCACTACCTGTAAGCGTGGACAAAAAAATCGCGGAGCAGA‑CGC‑CCTTCCCTCTGGTGCGCAGTTACAGAGGGAAGGCCACCTGGCCCGCGATGAAGTCCACCTCTTGCATCAATCCTTCTTGCGATAACCCTCGACGATGGcc                                                                                          >  2:258230/1‑147 (MQ=255)                                                            ccGCGCACTACCTGTAAGCGTGGACAAAAAAATCGCGGAGCAGA‑CGC‑CCTTCCCTCTGGTGCGCAGTTACAGAGGGAAGGCCACCTGGCCCGCGATGAAGTCCACCTCTTGCATCAATCCTTCTTGCGATAACCCTCGACGATGGCCga                                                                                        <  1:45499/149‑1 (MQ=255)                                                                gcACTACCTGTAAGCGTGGACAAAAAAATCGCGGAGCAGA‑CGC‑CCTTCCCTCTGGTGCGCAGTTACAGAGGGAAGGCCACCTGGCCCGCGATGAAGTCCACCTCTTGCATCAATCCTTCTTGCGATAACCCTCGACGATGGCCGAGAAg                                                                                    >  5:231967/1‑149 (MQ=255)                                                                  aCTACCTGTAAGCGTGGACAAAAAAATCGCGGAGCAGACCTCTCCTTCCCTCTGGTGCGCAGTTACAGAGGGAAGGCCACCTGGCCCGCGATGAAGTCCACCTCTTGCATCAATCCTTCTTGCGATAACCCTCGACGATGGCCGAGAAg                                                                                    <  1:272178/149‑1 (MQ=255)                                                                         gTAAGCGTGGACAAAAAAATCGCGGAGCAGA‑CGC‑CCTTCCCTCTGGTGCGCAGTTACAGAGGGAAGGCCACCTGGCCCGCGATGAAGTCCACCTCTTGCATCAATCCTTCTTGCGATAACCCTCGACGATGGCCGAGAAGTCCTTGCCa                                                                           >  3:38905/1‑149 (MQ=255)                                                                            aGCTTGGACAATATATTCGCGTAGCAGA‑CGC‑CGTTCCCTCTGGTGCGCAGTTACAGATGGAAGGCGTCCTGGACCGCGATTAAGTCAACCTCTTGCATCAATCGTTCTTGCGATAACCCTGGTCGATGGCCGAGAAGTCCTTGCCAcc                                                                         <  4:38905/148‑1 (MQ=255)                                                                                 ggACAAAAAAATCGCGGAGCAGA‑CGC‑CCTTCCCTCTGGTGCGCAGTTACAGAGGGAAGGCCACCTGGCCCGCGATGAAGTCCACCTCTTGCATCAATCCTTCTTGCGATAACCCTCGACGATGGCCGAGAAGTCCTTGCCACcctcgcc                                                                   >  3:295800/1‑149 (MQ=255)                                                                                 ggACAAAAAAATCGCGGAGCAGA‑CGC‑CCTTCCCTCTGGTGCGCAGTTACAGAGGGAAGGCCACCTGGCCCGCGATGAAGTCCACCTCTTGCATCAATCCTTCTTGCGATAACCCTCGACGATGGCCGAGAAGTCCTTGCCACcctcgc                                                                    >  3:282568/1‑148 (MQ=255)                                                                                    cAAAAAAATCGCGGAGCAGA‑CGC‑CCTTCCCTCTGGTGCGCAGTTACAGAGGGAAGGCCACCTGGCCCGCGATGAAGTCCACCTCTTGCATCAATCCTTCTTGCGATAACCCTCGACGATGGCCGAGAAGTCCTTGCCACcctcgcctcg                                                                >  7:71274/1‑149 (MQ=255)                                                                                     aaaaaaaTCGCGGAGCAGA‑CGC‑CCTTCCCACTGGTGCGCAGTTACAGAGGGAAGGCCACCTGGCCCGCGATGAAGTCCACCTCATGCATCAATCCTTCTTGCGAAAACCCTCGACGATGGCCGAGAAGTCCTTGCCACcctcgcctcg                                                                >  7:194233/1‑148 (MQ=255)                                                                                      aaaaaaTCGCGGAGCAGA‑CGC‑CCTTCCCTCTGGTGCGCAGTTACAGAGGGAAGGCCACCTGGCCCGCGATGAAGTCCACCTCTTGCATCAATCCTTCTTGCGATAACCCTCGACGATGGCCGAGAAGTCCTTGCCACcctcgcctcg                                                                >  8:217386/1‑147 (MQ=255)                                                                                            tCGCGGAGCAGA‑CGC‑CCTTCCCTCTGGTGCGCAGTTACAGAGGGAAGGCCACCTGGCccgcgatttttttgtccacgcttacaggtagtgcgcggccgtggtaggagcgggttcacccgcgaatgctacagaagcctcaccgccgcat                                                         <  2:145502‑M2/148‑92 (MQ=255)                                                                                              gcgGAGCAGA‑CGC‑CCTTCCCTCTGGTGCGCAGTTACAGAGGGAAGGCCACCTGGCccgcgatttttttgtccacgcttacaggtagtgcgcggccgtggtaggagcgggttcacccgcgaatgctacagaagcctcaccgccgcattag                                                      <  3:168632‑M2/149‑95 (MQ=255)                                                                                                 gAGCAGA‑CGC‑CCTTCCCTCTGGTGCGCAGTTACAGAGGGAAGGCCACCTGGCccgcgatttttttgtccacgcttacaggtagtgcgcggccgtggtaggagcgggttcacccgcgaatgctacagaagcctcaccgccgcattagcag                                                   >  1:145502‑M2/1‑52 (MQ=255)                                                                                                         cGC‑CCTTCCCTCTGGTGCGCAGTTACAGAGGGAAGGCCACCTGGCCCGCGATGAAGTCCACCTCTTGCATCAATCCTTCTTGCGATAACCCTCGACGATGGCCGAGAAGTCCTTGCCACCCTCGCCTCGCAGGCTCATGGCCTGGTACa                                            <  1:258230/149‑1 (MQ=255)                                                                                                         cGC‑CCTTCCCTCTGGTGCGCAGTTACAGAGGGAAGGCCACCTGGCCCGCGATGAAGTCCACCTCTTGCATCAATCCTTCTTGCGATAACCCTCGACGATGGCCGAGAAGTCCTTGCCACCCTCGCCTCGCAGGCTCATGGCCTGGTACa                                            <  6:231967/149‑1 (MQ=255)                                                                                                         cGC‑CCTTCCCTCTGGTGCGCAGTTACAGAGGGAAGGCCACCTGGCCCGCGATGAAGTCCACCTCTTGCATCAATCCTTCTTGCGATAACCCTCGACGATGGCCGAGAAGTCCTTGCCACCCTCGCCTCGCAGGCTCATGGCCTGGTACa                                            <  2:319704/149‑1 (MQ=255)                                                                                                             ccTTCCCTCTGGTGCGCAGTTACAGAGGGAAGGCCACCTGGCCCGCGATGAAGTCCACCTCTTGCATCAATCCTTCTTGCGATAACCCTCGACGATGGCCGAGAAGTCCTTGCCACCCTCGCCTCGCAgg                                                            <  4:16244/130‑1 (MQ=255)                                                                                                             ccTTCCCTCTGGTGCGCAGTTACAGAGGGAAGGCCACCTGGCCCGCGATGAAGTCCACCTCTTGCATCAATCCTTCTTGCGATAACCCTCGACGATGGCCGAGAAGTCCTTGCCACCCTCGCCTCGCAgg                                                            >  3:16244/1‑130 (MQ=255)                                                                                                             ccTTCCCTCTGGTGCGCAGTTACAGAGGGAAGGCCACCTGGCCCGCGATGAAGTCCACCTCTTGCATCAATCCTTCTTGCGATAACCCTCGACGATGGCCGAGAAGTCCTTGCCACCCTCGCCTCGCAGGCTCATGGCCTGGTACAgct                                         >  3:143010/1‑149 (MQ=255)                                                                                                                    tctGGTGCGCAGTTACAGAGGGAAGGCCACCTGGCCCGCGATGAAGTCCACCTCTTGCATCAATCCTTCTTGCGATAACCCTCGACGATGGCCGAGAAGTCCTTGCCACCCTCGCCTCGCAGGCTCATGGCCTGGTACAGCTGCTGGGc                                  >  2:151614/1‑149 (MQ=255)                                                                                                                            gcAGTTACAGAGGGAAGGCCACCTGGCCCGCGATGAAGTCCACCTCTTGCATCAATCCTTCTTGCGATAACCCTCGACGATGGCCGAGAAGTCCTTGCCACCCTCGCCTCGCAGGCTCATGGCCTGGTACAGCTGCTGGGCCACGGCAc                          <  8:78844/149‑1 (MQ=255)                                                                                                                                   cAGAGGGAAGGGCGTCTGCTCCGCGATGAAGTCCACCTCTTGCATCAATCCTTCTTGCGATAACCCTCGACGATGGCCGAGAAGTCCTTGCCACCCTCGCCTCGCAGGCTCATGGCCTGGTACAGCTGCTGGGCCACGGCACCGAGAAt                   <  3:296004/149‑1 (MQ=255)                                                                                                                                    agagGGAAGGCCACCTGGCCCGCGATGAAGTCCACCTCTTGCATCAATCCTTCTTGCGATAACCCTCGACGATGGCCGAGAAGTCCTTGCCACCCTCGCCTCGCAGGCTCATGGCCTGGTACAGCTGCTGGGCCACGGCACCGAGAAt                   >  8:93020/1‑148 (MQ=255)                                                                                                                                        ggccggCCACCTGGCCCGCGCTGAAGTCAACCACATGCATCAAACGTTCTAGCTCAAAAACTCGACGATGGCCGAGAAGTAGTTGAAACCCTCGCCGCCCAGGCACATGGGCGGGTACAGCTGCTGGGCCACGCCACCGACAAGCACCg              >  8:30931/5‑149 (MQ=255)                                                                                                                                          aaGGCCACCTGGCCCGCGATGAAGTCCACCTCTTGCATCAATCCTTCTTGCGATAACCCTCGACGATGGCCGAGAAGTCCTTGCCACCCTCGCCTCGCAGGCTCATGGCCTGGTACAGCTGCTGGGCCACGGCACCGAGAATCACCGGt            >  4:115101/1‑149 (MQ=255)                                                                                                                                             gCCATCTGGCCCGGGATGAAGTCCACCTGTTGCATCAATCCTTCTTGCGATAAGCCTCGACGATGGCCGAGAAGTCCTTGCCACCCTCGCCTCGCAGGGTCATGGCCTGGTACAGCTGCTGGGCGACGTCACCGAGAATCACCGGTTg          <  8:194233/148‑1 (MQ=255)                                                                                                                                                  cTGGCCCGCGATGAAGTCCACCTCTTGCATCAATCCTTCTTGCGATAACCCTCGACGATGGCCGAGAAGTCCTTGCCACCCTCGCCTCGCAGGCTCATGGCCTGGTACAGCTGCTGGGCCACGGCACCGAGAATCACCGGTTGGTGTGc    >  5:159718/1‑149 (MQ=255)                                                                                                                                                    ggCCCGCGATGAAGTCCACCTCTTGCATCAATCCTTCTTGCGATAACCCTCGACGATGGCCGAGAAGTCCTTGCCACCCTCGCCTCGCAGGCTCATGGCCTGGTACAGCTGCTGGGCCACGGCACCGAGAATCACCGGTTGGTGTGCCt  <  7:93020/149‑1 (MQ=255)                                                                                                                                                      |                                                                                                                                                   CTGCTAATGCGGCGGTGAGGCTTCTGTAGCATTCGCGGGTGAACCCGCTCCTACCACGGCCGCGCACTACCTGTAAGCGTGGACAAAAAAATCGCGGAGCAGA‑CGC‑CCTTCCCTCTGGTGCGCAGTTACAGAGGGAAGGCCACCTGGCCCGCGATGAAGTCCACCTCTTGCATCAATCCTTCTTGCGATAACCCTCGACGATGGCCGAGAAGTCCTTGCCACCCTCGCCTCGCAGGCTCATGGCCTGGTACAGCTGCTGGGCCACGGCACCGAGAATCACCGGTTGGTGTGCCT  >  NC_002947/5291790‑5292083

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.