New junction evidence | |||||||||||
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seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
* | ? | NC_002947 | 5617548 = | 65 (1.250) | 4 (0.080) | 4/254 | NT | 6.2% | coding (1104/1176 nt) | wzy | O‑antigen polymerase |
? | NC_002947 | 5617594 = | 59 (1.190) | coding (1058/1176 nt) | wzy | O‑antigen polymerase |
CGCTGGGCGAAATCGTGCGCGCCCGCGGCACCCTGTTCGGCAAGGTCCTGCTGGGCTTCTGGGTCTACTCGACCCTGGCCATGCAGTTCGATGCCGCCAGCCTCACCGGTACGCCACGTGCCGAATGGTTCATCAGCTGGCTGCCGGTG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_002947/5617696‑5617548 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ccggtgAGGCTGGCGGCATCGAACTGCATGGCCAGGGTCGAGTAGACCCAGAAGCCCAGCAGGACCTTGCCGAACAGGGTGCCGCGGGCGCGCACGATTTCGCCCAGCGTGAACAGCCACACCATTACCCACAGCAACATGCCGGGCAAGCCC > NC_002947/5617594‑5617740 CGCTGGGCGAAATCGTGCGCGCCCGCGGCACCCTGTTCGGCAAGGTCCTGCTGGGCTTCTGGGTCTACTCGACCCTGGCCATGCAGTTCGATGCCGCCAGCCTCACCGGTACGCCACGTGCCGAATGGTTCATCAGCTGGCTGCCGGTG < 6:19800/149‑1 CGCTGGGCGAAATCGTGCGCGCCCGCGGCACCCTGTTCGGCAAGGTCCTGCTGGGCTTCTGGGTCTACTCGACCCTGGCCATGCAGTTCGATGCCGCCAGCCTCACCGGTACGCCACGTGCCGAATGGTTCATCAGCTGGCTGCCGGTG < 6:246752/149‑1 CAGCCTCACCGGTACGCCACGTGCCGAATGGTTCATCAGCTGGCTGCCGGTGAGGCTGGCGGCATCGAACTGCATGGCCAGGGTCGAGTAGACCCAGAAGCCCAGCAGGACCTTGC < 7:151040/116‑1 CAGCCTCACCGGTACGCCACGTGCCGAATGGTTCATCAGCTGGCTGCCGGTGAGGCTGGCGGCATCGAACTGCATGGCCAGGGTCGAGTAGACCCAGAAGCCCAGCAGGACCTTGC > 8:151040/1‑116 CCTCACCGGTACGCCACGTGCCGAATGGTTCATCAGCTGGCTGCCGGTGAGGCTGGCGGCATCGAACTGCATGGCCAGGGTCGAGTAGACCCAGAAGCCCAGCAGGACCTTGCCGAACAGGGTGCCGCGGGCGCGCACGATTTCGCC > 3:77450/1‑147 CATCATCTGGCTGCCGGTGAGGCGGGCGGCATCGAACTGCATGGCCACGGTCGAGTAGACCCAGAACCCCATCAGGACCTTGCCGAACAGGGGGCCGCGGGCGCGCACGATTTCGCCCAGCGTGAACAGCCACACCATTACCCACCGC < 4:77450/148‑1 TGAGGCTGGCGGCATCGAACTGCATGGCCAGGGTCGAGTAGACCCAGAAGCCCAGCAGGACCTTGCCGAACAGGGTGCCGCGGGCGCGCACGATTTCGCCCAGCGTGAACAGCCACACCATTACCCACAGCAACATGCCGGGCAAGCCC < 7:79554/149‑1 CGCTGGGCGAAATCGTGCGCGCCCGCGGCACCCTGTTCGGCAAGGTCCTGCTGGGCTTCTGGGTCTACTCGACCCTGGCCATGCAGTTCGATGCCGCCAGCCTCACCGGTACGCCACGTGCCGAATGGTTCATCAGCTGGCTGCCGGTG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_002947/5617696‑5617548 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ccggtgAGGCTGGCGGCATCGAACTGCATGGCCAGGGTCGAGTAGACCCAGAAGCCCAGCAGGACCTTGCCGAACAGGGTGCCGCGGGCGCGCACGATTTCGCCCAGCGTGAACAGCCACACCATTACCCACAGCAACATGCCGGGCAAGCCC > NC_002947/5617594‑5617740 |
Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
Reads not counted as support for junction |
read_name Not counted due to insufficient overlap past the breakpoint. |
read_name Not counted due to not crossing MOB target site duplication. |