New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	5617548 =	65 (1.250)	4 (0.080)	4/254	NT	6.2%	coding (1104/1176 nt)	wzy	O‑antigen polymerase
	?	NC_002947	5617594 =	59 (1.190)					coding (1058/1176 nt)	wzy	O‑antigen polymerase

CGGTGTTTCGGCCATTATCGAGCTCGCTGTTCAGGTTGAACCGGCAATTTTACCACAGGCGTCATTTTCGGCACGCCCCCATGGCAGCAACATGGCAAGGCCCACCGGCAGCCAGCTGATGAACCATTCGGCACGTGGCGTACCGGTGAGGCTGGCGGCATCGAACTGCATGGCCAGGGTCGAGTAGACCCAGAAGCCCAGCAGGACCTTGCCGAACAGGGTGCCGCGGGCGCGCACGATTTCGCCCAGCGTGAACAGCCACACCATTACCCACAGCAACATGCCGGGCAAGCCC  >  NC_002947/5617446‑5617740                                                                                                                                                     |                                                                                                                                                   cgGTGTTTCGGCCATTATCGAGCTCGCTGTTCAGGTTGAACCGGCAATTTTACCACAGGCGTCATTTTCGGCACGCCCCCATGGCAGCAACATGGCAAGGCCCACCGGCAGCCAGCTGATGAACCATTCGGCACGTGGCGTACCGGTGa                                                                                                                                                    <  1:48657/149‑1 (MQ=255)   gtgtTTCGGCCATTATCGAGCTCGCTGTTCAGGTTGAACCGGCAATTTTACCACAGGCGTCATTTTCGGCACGCCCCCATGGCAGCAACATGGCAAGGCCCACCGGCAGCCAGCTGATGAACCATTCGGCACGTGGCGTACCGGTGAgg                                                                                                                                                  >  1:222053/1‑149 (MQ=255)     ggcgaaatcgtgcgcgcccgcggcaccctgttcggcaaggtcctgctgggcttctgggtctactcgaccctggccatgcagttcgatgccgccagcctCACCGGCAGCCAGCTGATGAACCATTCGGCACGTGGCGTACCGGTGAgg                                                                                                                                                  >  3:77450‑M1/99‑147 (MQ=255)        tCGGCCATTATCGAGCTCGCTGTTCAGGTTGAACCGGCAATTTTACCACAGGCGTCATTTTCGGCACGCCCCCATGGCAGCAACATGGCAAGGCCCACCGGCAGCCAGCTGATGAACCATTCGGCACGTGGCGTACCGGTGAGGCTggc                                                                                                                                             >  6:156921/1‑149 (MQ=255)          ggCCATTATCGAGCTCGCTGTTCAGGTTGAACCGGCAATTTTACCACAGTCGTCATTTTCGGCACGCCCCCATGGCAGCAACATGGCAAGGCCCACCGGCAGCCAGCTGATGAACCATTCGGCACGTGGCGTACCGGTGAGGCTggcg                                                                                                                                            <  6:86026/148‑1 (MQ=255)           gCCATTATCGAGCTCGCTGTTCAGGTTGAACTGGCAATTTTACCACAGGCGTCATTTTCGGCACGCCCCCATGGCAGCAACATGGCAAGGCCCACCGGCAGCCAGCTGATGAACCATTCGGCACGTGGCGTACCGGTGAGGCTggcgg                                                                                                                                           >  4:142321/1‑148 (MQ=255)           gCCATTATCGAGCTCGCTGTTCAGGTTGAACCGGCAATTTTACCACAGGCGTCATTTTCGGCACGCCCCCATGGCAGCAACATGGCAAGGCCCACCGGCAGCCAGCTGATGAACCATTCGGCACGTGGCGTACCGGTGAGGCTggcggc                                                                                                                                          <  6:243994/149‑1 (MQ=255)                 aTCGAGCTCGCTGTTCAGGTTGAACCGGCAATTTTACCACAGGCGTCATTTTCGGCACGCCCCCATGGCAGCAACATGGCAAGGCCCACCGGCAGCCAGCTGATGAACCATTCGGCACGTGGCGTACCGGTGAGGCTGGCGGCATCGaa                                                                                                                                    >  5:211411/1‑149 (MQ=255)                  tCGAGCTCGCTGTTCAGGTTGAACCGGCAATTTTACCACAGGCGTCATTTTCGGCACGCCCCCATGGCAGCAACATGGCAAGGCCCACCGGCAGCCAGCTGATGAACCATTCGGCACGTGGCGTACCGGTGAGGCTGGCGGCATCGAAc                                                                                                                                   <  5:293645/149‑1 (MQ=255)                          gCTGTTCAGGTTGAACCGGCAATTTTACCACAGGCGTCATTTTCGGCACGCCCCCATGGCAGCAACATGGCAAGGCCCACCGGCAGCCAGCTGATGAACCATTCGGCACGTGGCGTACCGGTGAGGCTGGCGGCATCGAACTGCATg                                                                                                                             <  7:258208/147‑1 (MQ=255)                              ttCAGGTTGAACCGGCAATTTTACCACAGGCGTCATTTTCGGCACGCCCCCATGGCAGCAACATGGCAAGGCCCACCGGCAGCCAGCTGATGAACCATTCGGCACGTGGCGTACCGGTGAGGCTGGCGGCATCGAACTGCATGGCCa                                                                                                                         <  5:327037/147‑1 (MQ=255)                              ttCAGGTTGAACCGGCAATTTTACCACAGGCGTCATTTTCGGCACGCCCCCATGGCAGCAACAAGGCAAGGCCCACCGGCAGCCAGCTGATGAACCATTCGGCACGTGGCGTACCGGTGAGGCTGGCGGCATCGAACTGCATGGCCacg                                                                                                                       >  2:295966/1‑147 (MQ=255)                                  ggTTGAACCGGCAATTTTACCACAGGCGTCATTTTCGGCACGCCCCCATGGCAGCAACATGGCAAGGTCCACCGGCAGCCAGCTGATGAACCATTCGGCACGTGGCGTACCGGTGAGGCTGGCGGCATCGAACTGCATGGCCAGGGTc                                                                                                                    >  2:322918/1‑148 (MQ=255)                                  ggTTGAACCGGCAATTTTACCACAGGCGTCATTTTCGGCACGCCCCCATGGCAGCAACATGGCAAGGCCCACCGGCAGCCAGCTGATGAACCATTCGGCACGTGGCGTACCGGTGAGGCTGGCGGCATCGAACTGCATGGCCAGGGTc                                                                                                                    >  1:50579/1‑148 (MQ=255)                                   gTTGAACCGGCAATTTTACCACAGGCGTCATTTTCGGCACGCCCCCATGGCAGCAACATGGCAAGGCCCACCGGCAGCCAGCTGATGAACCATTCGGCACGTGGCGTACCGGTGAGGCTGGCGGCATCGAACTGCATGGCCAGGGTc                                                                                                                    >  3:26889/1‑147 (MQ=255)                                       gcaaggtcctgctgggcttctgggtctactcgaccctggccatgcagttcgatgccgccagcctCACCGGCAGCCAGCTGATGAACCATTCGGCACGTGGCGTACCGGTGAGGCTg                                                                                                                                               >  8:151040‑M1/65‑116 (MQ=255)                                       gcaaggtcctgctgggcttctgggtctactcgaccctggccatgcagttcgatgccgccagcctCACCGGCAGCCAGCTGATGAACCATTCGGCACGTGGCGTACCGGTGAGGCTg                                                                                                                                               <  7:151040‑M1/52‑1 (MQ=255)                                       aaCCGGCAATTTTACCACAGGCGTCATTTTCGGCACGCCCCCATGGCAGCAACATGGCAAGGCCCACCGGCAGCCAGCTGATGAACCATTCGGCACGTGGCGTACCGGTGAGGCTGGCGGCATCGAACTGCATGGCCAGGGTCGAg                                                                                                                 >  1:180784/1‑146 (MQ=255)                                         ccGGCAATTTTACCACAGGCGTCATTTTCGGCACGCCCCCATGGCAGCAACATGGCAAGGCCCACCGGCAGCCAGCTGATGAACCATTCGGCACGTGGCGTACCGGTGAGGCTGGCGGCATCGAACTGCATGGCCAGGGTCGAGTAGAc                                                                                                            >  7:105604/1‑149 (MQ=255)                                          cGGCAATTTTACCACAGGCGTCATTTTCGGCACGCCCCCATGGCAGCAACATGGCAAGGCCCACCGGCAGCCAGCTGATGAACCATTCGGCACGTGGCGTACCGGTGAGGCTGGCGGCATCGAACTGCATGGCCAGGGTCGAGTAGAcc                                                                                                           >  2:1945/1‑149 (MQ=255)                                          cGGCAATTTTACCACAGGCGTCATTTTCGGCACGCCCCCATGGCAGCAACATGGCAAGGCCCACCGGCAGCCAGCTGATGAACCATTCGGCACGTGGCGTACCGGTGAGGCTGGCGGCATCGAACTGCATGGCCAGGGTCGAGTAGAcc                                                                                                           >  8:73155/1‑149 (MQ=255)                                           ggCAATTTTACCACAGGCGTCATTTTCGGCACGCCCCCATGGCAGCAACATGGCAAGGCCCACCGGCAGCCAGCTGATGAACCATTCGGCACGTGGCGTACCGGTGAGGCTGGCGGCATCGAACTGCATGGCCAGGGTCGAGTAGAcc                                                                                                           >  4:24876/1‑148 (MQ=255)                                            gCAATTTTACCACAGGCGTCATTTTCGGCACGCCCCCATGGCAGCAACATGGCAAGGCCCACCGGCAGCCAGCTGATGAACCATTCGGCACGTGGCGTACCGGTGAGGCTGGCGGCATCGAACTGCATg                                                                                                                             >  3:118484/1‑129 (MQ=255)                                            gCAATTTTACCACAGGCGTCATTTTCGGCACGCCCCCATGGCAGCAACATGGCAAGGCCCACCGGCAGCCAGCTGATGAACCATTCGGCACGTGGCGTACCGGTGAGGCTGGCGGCATCGAACTGCATg                                                                                                                             <  4:118484/129‑1 (MQ=255)                                            gCAATTTTACCACAGGCGTCATTTTCGGCACGCCCCCATGGCAGCAACATGGCAAGGCCCACCGGCAGCCAGCTGATGAACCATTCGGCACGTGGCGTACCGGTGAGGCTGGCGGCATCGAACTGCATGGCCAGGGTCGAGTAGACCCa                                                                                                         >  8:138887/1‑149 (MQ=255)                                                      cacaGGCGTCATTTTCGGCACGCCCCCATGGCAGCAACATGGCAAGGCCCACCGGCAGCCAGCTGATGAACCATTCGGCACGTGGCGTACCGGTGAGGCTGGCGGCATCGAACTGCATGGCCAGGGTCGAGTAGACCCAGAAGCCca                                                                                                 >  7:87610/1‑147 (MQ=255)                                                      cacaGGCGTCATTTTCGGCACGCCCCCATGGCAGCAACATGGCAAGGCCCACCGGCAGCCAGCTGATGAACCATTCGGCACGTGGCGTACCGGTGAGGCTGGCGGCATCGAACTGCATGGCCAGGGTCGAGTAGACCCAGAAGCCca                                                                                                 <  8:87610/147‑1 (MQ=255)                                                       acaGGCGTCATTTTCGGCACGCCCCCATGGCAGCAACATGGCAAGGCCCACCGGCAGCCAGCTGATGAACCATTCGGCACGTGGCGTACCGGTGAGGCTGGCGGCATCGAACTGCATGGCCAGGGTCGAGTAGACCCAGAAGCCcagca                                                                                              <  2:222053/149‑1 (MQ=255)                                                       acaGGCGCCATCTTCGGCACGCCCCCATGGCTGCAACATGGCAAGGCCCACCGGCAGCCAGCCGATGAACCATTCGGCACGTGGCGTACCGGTGAGGCTGGCGGCATCGAACTGGATGGCCAGGGTCGAGTAGACCCAGAAGCCcagca                                                                                              <  3:240990/149‑1 (MQ=255)                                                        caGGCGTCATTTTCGGCACGCCCCCATGGCAGCAACATGGCAAGGTCCACCGGCAGCCAGCTGATGAACCATTCGGCACGTGGCGTACCGGTGAGGCTGGCGGCATCGAACTGCATGGCCAGGGTCGAGTAGACCCAGAAGCCcagcag                                                                                             <  1:322918/149‑1 (MQ=255)                                                         aGGCGTCATTTTCGGCACGCCCCCATGGCAGCAACATGGCAAGGCCCACCGGCAGCCAGCTGATGAACCATTCGGCACGTGGCGTACCGGTGAGGCTGGCGGCATCGAACTGCATGGCCAGGGTCGAGTAGACCCAGAAGCCCAGCAgg                                                                                            <  1:11317/149‑1 (MQ=255)                                                           gCGTCATTTTCGGCACGCCCCCATGGCAGCAACATGGCAAGGCCCACCGGCAGCCAGCTGATGAACCATTCGGCACGTGGCGTACCGGTGAGGCTGGCGGCATCGAACTGCATGGCCAGGGTCGAGTAGACCCAGAAGCCCAGCAGGAc                                                                                          <  7:138887/149‑1 (MQ=255)                                                             gTCATTTTCGGCACGCCCCCATGGCAGAAACATGGCAAGGCCCACCGGCAGCCAGCTGATGAACCATTCGGAACGTGGCGTACCAGTGAGGCTGGCGGCATCGAACTGCATGGCCAGGGTCGAGTAGACCCAGAAGCCCAGCAGGACCt                                                                                        >  7:48084/1‑149 (MQ=255)                                                                 ttttCGGCACGCCCCCATGGCAGCAACATGGCAAGGCCCACCGGCAGCCAGCTGATGAACCATTCGGCACGTGGCGTACCGGTGAGGCTGGCGGCATCGAACTGCATGGCCAGGGTCGAGTAGACCCAGAAGCCCAGCAGGACCTTGcc                                                                                    >  3:125331/1‑149 (MQ=255)                                                                 ttttCGGCACGCCCCCATGGCAGCAACATGGCAAGGCCCACCGGCAGCCAGCTGATGAACCATTCGGCACGTGGCGTACCGGTGAGGCTGGCGGCATCGAACTGCATGGCCAGGGTCGAGTAGACCCAGAAGCCCAGCAGGACCTTGcc                                                                                    <  1:117289/149‑1 (MQ=255)                                                                      ggCAAGCCCCCATGGCAGCAACATGGCAAGGCCCACCGGCAGCCAGCTGATGAACCATTCGGCACGTGGCGTACCGGTGAGGCTGGCGGCATCGAACTGCATGGCCAGGGTCGAGTAGACCCAGAAGCCCAGCAGGACCTTGCCGAACa                                                                               <  3:227734/149‑1 (MQ=255)                                                                        cACGCCCCCATGGCAGCAACATGGCAAGGCCCACCGGCAGCCAGCTGATGAACCATTCGGCACGTGGCGTACCGGTGAGGCTGGCGGCATCGAACTGCATGGCCAGGGTCGAGTAGACCCAGAAGCCCAGCAGGACCTTGCCGAACAgg                                                                             <  5:39292/149‑1 (MQ=255)                                                                        cACGCCCCCATGGCAGCAACATGGCAAGGCCCACCGGCACCCAGCTGTTGAACCATTCGGCACGTGGCGTACCGGTGAGGCTGGCGGCATCGAACTGCATGGCCAGGGTCGAGTAGACCCAGAAGCCCAGCAGGACCTTGCCGAACAgg                                                                             <  8:48084/149‑1 (MQ=255)                                                                           gCCCCCATGGCAGCAACATGGCAAGGCCCACCGGCAGCCAGCTGACGAACCATTCGGCACGTGGCGTACCGGTGAGGCTGGCGGCATCGAACTGCATGGCCAGGGTCGAGTAGACCCAGAAGCCCAGCAGGACCTTGCCGAACAGGGTg                                                                          >  5:99702/1‑149 (MQ=255)                                                                             ccccATGGCAGCAACATGGCAAGGCCGACCGGCAGCCAGCTGATGAACCATTCGGCACGTGGCGTACCGGTGAGGCTGGCGGCATCGAACTGCATGGCCAGGGTCGAGTAGACCCAGAAGCCCAGCAGGACCTTGCCGAACAGGGTGcc                                                                        <  8:105604/149‑1 (MQ=255)                                                                             ccccATGGCAGCAACATGGCAAGGCCCACCGGCAGCCAGCTGATGAACCATTCGGCACGTGGCGTACCGGTGAGGCTGGCGGCATCGAACTGCATGGc                                                                                                                           <  2:140138/98‑1 (MQ=255)                                                                             ccccATGGCAGCAACATGGCAAGGCCCACCGGCAGCCAGCTGATGAACCATTCGGCACGTGGCGTACCGGTGAGGCTGGCGGCATCGAACTGCATGGc                                                                                                                           >  1:140138/1‑98 (MQ=255)                                                                                 aTGGCAGCAACATGGCAAGGCCCACCGGCAGCCAGCTGATGAACCATTCGGCACGTGGCGTACCGGTGAGGCTGGCGGCATCGAACTGCATGGCCAGGGTCGAGTAGACCCAGAAGCCCAGCAGGACCTTGCCGAACAGGGTGCCGCgg                                                                    <  2:50579/149‑1 (MQ=255)                                                                                         aaCATGGCAAGGCCCACCGGCAGCCAGCTGATGAACCATTCGGCACGTGGCGTACCGGTGAGGCTGGCGGCATCGAACTGCATGGCCAGGGTCGAGTAGACCCAGAAGCCCAGCAGGACCTTGCCGAACAGGGTGCCGCGGGCGCGCAc                                                            <  4:26889/149‑1 (MQ=255)                                                                                              ggCAAGGCCCACCGGCAGCCAGCTGATGAACCATTCGGCACGTGGCGTACCGGTGAGGCTGGCGGCATCGAACTGCATGGCCAGGGTCGAGTAGACCCAGAAGCCCAGCAGGACCTTGc                                                                                     <  2:191737/119‑1 (MQ=255)                                                                                              ggCAAGGCCCACCGGCAGCCAGCTGATGAACCATTCGGCACGTGGCGTACCGGTGAGGCTGGCGGCATCGAACTGCATGGCCAGGGTCGAGTAGACCCAGAAGCCCAGCAGGACCTTGc                                                                                     <  2:186852/119‑1 (MQ=255)                                                                                              ggCAAGGCCCACCGGCAGCCAGCTGATGAACCATTCGGCACGTGGCGTACCGGTGAGGCTGGCGGCATCGAACTGCATGGCCAGGGTCGAGTAGACCCAGAAGCCCAGCAGGACCTTGc                                                                                     >  1:191737/1‑119 (MQ=255)                                                                                              ggCAAGGCCCACCGGCAGCCAGCTGATGAACCATTCGGCACGTGGCGTACCGGTGAGGCTGGCGGCATCGAACTGCATGGCCAGGGTCGAGTAGACCCAGAAGCCCAGCAGGACCTTGc                                                                                     >  1:186852/1‑119 (MQ=255)                                                                                               gCAAGGCCCACCGGCAGCCAGCTGATGAACCATTCGGCACGTGGCGTACCGGTGAGGCTGGCGGCATCGAACTGCATGGCCAGGGTCGAGTAGACCCAGAAGCCCAGCAGGACCTTGCCGAACAGGGTGCCGCGGGCGCGCACGATTTc                                                      <  7:73155/149‑1 (MQ=255)                                                                                               gCAAGGCCCACCGGCAGCCAGCTGATGAACCATTCGGCACGTGGCGTACCGGTGAGGCTGGCGGCATCGAACTGCATGGCCAGGGTCGAGTAGACCCAGAAGCCCAGCAGGACCTTGCCGAACAGGGTGCCGCGGGCGCGCACGATTTc                                                      >  6:305977/1‑149 (MQ=255)                                                                                               gCAAGGCCCACCGGCAGCCAGCTGATGAACCATTCGGCACGTGGCGTACCGGTGAGGCTGGCGGCATCGAACTGCATGGCCAGGGTCGAGTAGACCCAGAAGCCCAGCAGGACCTTGCCGAACAGGGTGCCGCGGGCGCGCACGATTTc                                                      >  8:112406/1‑149 (MQ=255)                                                                                                cAAGGCCCACCGGCAGCCAGCTGATGAACCATTCGGCACGTGGCGTACCGGTGAGGCTGGCGGCATCGAACTGCATGGCCAGGGTCGAGTAGACCCAGAAGCCCAGCAGGACCTTGCCGAACAGGGTGCCGCGGGCGCGCACGATTTCg                                                     >  6:64986/1‑149 (MQ=255)                                                                                                 cagcctcaccggtacgccacgtgccgaatggttcatcagctggctgccggtgAGGCTGGCGGCATCGAACTGCATGGCCAGGGTCGAGTAGACCCAGAAGCCCAGCAGGACCTTGc                                                                                     <  7:151040‑M2/64‑1 (MQ=255)                                                                                                 cagcctcaccggtacgccacgtgccgaatggttcatcagctggctgccggtgAGGCTGGCGGCATCGAACTGCATGGCCAGGGTCGAGTAGACCCAGAAGCCCAGCAGGACCTTGc                                                                                     >  8:151040‑M2/53‑116 (MQ=255)                                                                                                   ggCCCACCGGCAGCCAGCTGATGAACCATTCGGCACGTGGCGTACCGGTGAGGCTGGCGGCATCGAACTGCATGGCCAGGGTCGAGTAGACCCAGAAGCCCAGCAGGACCTTGCCGAACAGGGTGCCGCGGGCGCGCACGATTTCGcc                                                   >  8:79554/1‑148 (MQ=255)                                                                                                    gCCCACCGGCAGCCAGCTGATGAACCATTCGGCACGTGGCGTACCGGTGAGGCTGGCGGCATCGAACTGCATGGCCAGGGTCGAGTAGACCCAGAAGCCCAGCACGACCTTGCCGAACAGGGTGCCGCGGGCGCGCACGATTTCGcc                                                   >  8:93711/1‑147 (MQ=255)                                                                                                    gCCCACCGGCAGCCAGCTGATGAACCATTCGGCACGTGGCGTACCGGTGAGGCTGGCGGCATCGAACTGCATGGCCAGGGTAGAGTAGACCCAGAAGCCCAGCAGGACCTTGCCGAACAGGGTGCCGCGGGCGCGCACGATTTCGcc                                                   >  1:110242/1‑147 (MQ=255)                                                                                                    cctcaccggtacgccacgtgccgaatggttcatcagctggctgccggtgAGGCTGGCGGCATCGAACTGCATGGCCAGGGTCGAGTAGACCCAGAAGCCCAGCAGGACCTTGCCGAACAGGGTGCCGCGGGCGCGCACGATTTCGcc                                                   >  3:77450‑M2/50‑147 (MQ=255)                                                                                                       CACCGGCAGCCAGCTGATGAACCATTCGGCACGTGGCGTACCGGTGAGGCTGGCGGCATCGAACTGCATGGCCAGGGTCGAGTAGACCCAGAAGCCCAGCAGGACCTTGCCGAACAGGGTGCCGCGGGCGCGCACGATTTCGCCCAGCg                                              <  6:246752‑M1/149‑1 (MQ=255)                                                                                                       CACCGGCAGCCAGCTGATGAACCATTCGGCACGTGGCGTACCGGTGAGGCTGGCGGCATCGAACTGCATGGCCAGGGTCGAGTAGACCCAGAAGCCCAGCAGGACCTTGCCGAACAGGGTGCCGCGGGCGCGCACGATTTCGCCCAGCg                                              <  6:19800‑M1/149‑1 (MQ=255)                                                                                                             cagccagcTGATGAACCATTCGGCACGTGGCGTACCGGTGAGGCTGGCGGCATCGAACTGCATGGCCAGGGTCGAGTAGACCCAGAAGCCCAGCAGGACCTTGCCGAACAGGGTGCCGCGGGCGCGCACGATTTCGCCCAGCGTGAACa                                        <  7:104742/149‑1 (MQ=255)                                                                                                                 cagcTGATGAACCATTCGGCACGTGGCGTACCGGTGAGGCTGGCGGCATCGAACTGCATGGCCAGGGTCGAGTAGACCCAGAAGCCCAGCAGGACCTTGCCGAACAGGGTGCCGCGGGCGCGCACGATTTCGCCCAGCGTGAACAGCca                                    <  3:142321/149‑1 (MQ=255)                                                                                                                    cTGACGAACCATTCGGCACGTGGCGTACCGGTGAGGCTGGCGGCATCGAACTGCATGGCCAGGGTCGAGTAGACCCAGAAGCCCAGCAGGACCTTGCCGAACAGGGTGCCGCGGGCGCGCACGATTTCGCCCAGCGTGAACAGCCacac                                 <  6:99702/149‑1 (MQ=255)                                                                                                                      gatgaACCATTCGGCACGTGGCGTACCGGTGAGGCTGGCGGCATCGAACTGCATGGCCAGGGTCGAGTAGACCCAGAAGCCCAGCAGGACCTTGCCGAACAGGGTGCCGCGGGCGCGCACGATTTCGCCCAGCGTg                                            >  2:88314/1‑136 (MQ=255)                                                                                                                      gatgaACCATTCGGCACGTGGCGTACCGGTGAGGCTGGCGGCATCGAACTGCATGGCCAGGGTCGAGTAGACCCAGAAGCCCAGCAGGACCTTGCCGAACAGGGTGCCGCGGGCGCGCACGATTTCGCCCAGCGTg                                            <  1:88314/136‑1 (MQ=255)                                                                                                                       atgaACCATTCGGCACGTGGCGTACCGGTGAGGCTGGCGGCATCGAACTGCATGGCCAGGGTCGAGTAGACCCAGAAGCCCAGCAGGACCTTGCCGAACAGGGTGCCGCGGGCGCGCACGATTTCGCCCAGCGTGAACAGCCACAcc                                <  5:156921/147‑1 (MQ=255)                                                                                                                         gaACCATTCGGCACGTGGCGTACCGGTGAGGCTGGCGGCATCGAACTGCATGGCCAGGGTCGAGTAGACCCAGAAGCCCAGCAGGACCTTGCCGGAc                                                                                >  6:233392/1‑97 (MQ=255)                                                                                                                             cATTCGGCACGTGGCGTACCGGTGAGGCTGGCGGCATCGAACTGCATGGCCAGGGTCGAGTAGACCCAGAAGCCCAGCAGGACCTTGCCGAACAGGGTGCCGC‑GGCGCGCACGATTTCGCCCAGCGTGAACAGCCACACCATTACCcac                       >  1:157181/1‑149 (MQ=255)                                                                                                                                  ggCACGTGGCGTACCGGTGAGGCTGGCGGCATCGAACTGCATGGCCAGGGTCGAGTAGACCCAGAAGCCCAGCAGGACCTTGCCGAACAGGGTGCCGCGGGCGCGCACGATTTCGCCCAGCGTGAACAGCCACACCATTACCCACAGc                    <  1:295966/148‑1 (MQ=255)                                                                                                                                  catcatctggctgccggtgAGGCGGGCGGCATCGAACTGCATGGCCACGGTCGAGTAGACCCAGAACCCCATCAGGACCTTGCCGAACAGGGGGCCGCGGGCGCGCACGATTTCGCCCAGCGTGAACAGCCACACCATTACCCACCGc                    <  4:77450‑M2/129‑1 (MQ=255)                                                                                                                                          gCGTACCGGTGAGGCTGGCGGCATCGAACTGCATGGCCAGGGTCGAGTAGACCCAGAAGCCCAGCAGGACCTTGCCGAACAGGGTGCCGCGGGCGCGCACGATTTCGCCCAGCGTGAACAGCCACACCATTACCCACAGCAACATGCCg           <  5:305977/149‑1 (MQ=255)                                                                                                                                          gCGTACCGGTGAGGCTGGCGGCATCGAACTGCATGGCCAGGGTCGAGTAGACCCAGAAGCCCAGCAGGACCTTGCCGAACAGGGTGCCGC‑GGCGCGCACGATTTCGCCCAGCGTGAACAGCCACACCATTACCCACAGCAACATGCCg           <  2:157181/148‑1 (MQ=255)                                                                                                                                                   tgAGGCTGGCGGCATCGAACTGCATGGCCAGGGTCGAGTAGACCCAGAAGCCCAGCAGGACCTTGCCGAACAGGGTGCCGCGGGCGCGCACGATTTCGCCCAGCGTGAACAGCCACACCATTACCCACAGCAACATGCCGGGCAAGccc  <  7:79554‑M2/147‑1 (MQ=255)                                                                                                                                                     |                                                                                                                                                   CGGTGTTTCGGCCATTATCGAGCTCGCTGTTCAGGTTGAACCGGCAATTTTACCACAGGCGTCATTTTCGGCACGCCCCCATGGCAGCAACATGGCAAGGCCCACCGGCAGCCAGCTGATGAACCATTCGGCACGTGGCGTACCGGTGAGGCTGGCGGCATCGAACTGCATGGCCAGGGTCGAGTAGACCCAGAAGCCCAGCAGGACCTTGCCGAACAGGGTGCCGCGGGCGCGCACGATTTCGCCCAGCGTGAACAGCCACACCATTACCCACAGCAACATGCCGGGCAAGCCC  >  NC_002947/5617446‑5617740

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.