New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 5755484	27 (0.520)	3 (0.060)	3/250	NT	10.1%	coding (598/1437 nt)	glnG	two‑component system DNA‑binding response regulator GlnL/GlnG
	?	NC_002947	= 5755518	28 (0.570)					coding (632/1437 nt)	glnG	two‑component system DNA‑binding response regulator GlnL/GlnG

GGAGGTGTTCCGCGCCATCGGCCGCCTCAGCCACTCCAACATCACCGTGCTGATCAACGGCGAGTCCGGCACCGGCAAAGAACTGGTGGCCCACGCCCTGCACCGGCACAGCCCACGCGCAGCATCCCCGTTCATTGCCCTGAACATGGCCG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/5755333‑5755484 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑catggccgAACAGCTCCGACTCCATCAAGTCCTTGGGGATGGCGGCCATGTTCAGGGCAATGAACGGGGATGCTGCGCGTGGGCTGTGCCGGTGCAGGGCGTGGGCCACCAGTTCTTTGCCGGTGCCGGACTCGCCGTTGATCAGCACGG  <  NC_002947/5755518‑5755377                                                                                                                                                                                                                                                                                                        GGAGGTGTTCCGCGCCATCGGCCGCCTCAGCCACTCCAACATCACCGTGCTGATCAACGGCGAGTCCGGCACCGGCAAAGAACTGGTGGCCCACGCCCTGCACCGGCACAGCCCACGCGCAGCATCCCCGTTCATTGCCCTGAACATGG                                                                                                                                                   >  5:1915/1‑149  GAGGTGTTCCGCGCCATCGGCCGCCTCAGCCACTCCAACATCACCGTGCTGATCAACGGCGAGTCCGGCACCGGCAAAGAACTGGTGGCCCACGCCCTGCACCGGCACAGCCCACGCGCAGCATCCCCGTTCATTGCCCTGAACATGGC                                                                                                                                                  >  2:34410/1‑149   AGGTGTTCCGCGCCATCGGCCGCCTCAGCCACTCCAACATCACCGTGCTGATCAACGGCGAGTCCGGCACCGGCAAAGAACTGGTGGCCCACGCCCTGCACCGGCACAGCCCACGCGCAGCATCCCCGTTCATTGCCCTGAACATGGCC                                                                                                                                                 <  3:202325/149‑1   AGGTGTTCCGCGCCATCGGCCGCCTCAGCCACTCCAACATCACCGTGCTGATCAACGGCGAGTCCGGCACCGGCAAAGAACTGGTGGCCCACGCCCTGCACCGGCACAGCCCACGCGCAGCATCCCCGTTCATTGCCCTGAACATGGCC                                                                                                                                                 <  4:106211/149‑1                                     CAACATCACCGTGCTGATCAACGGCGAGTCCGGCACCGGCAAAGAACTGGTGGCCCACGCCCTGCACCGGCACAGCCCACGCGCAGCATCCCCGTTCATTGCCCTGAACATGGCCGAACAGCTCCGACTCCATCAAGTCCTTGGGGATG                                                                                                               >  8:88584/1‑149                                                  CTGATCAACGGCGAGTCCGGCACCGGCAAAGAACTGGTGGCCCACGCCCTGCACCGGCACAGCCCACGCGCAGCATCCCCCTTCATTGCCCTGAACATGGCCGAACAGCTCCGACTCCATCAAGTCCTTGGGGATGGCGGCCATGTTCA                                                                                                  <  7:88584/149‑1                                                     ATCAACGGCGAGTCCGGCACCGGCAAAGAACTGGTGGCCCACGCCCTGCACCGGCACAGCCCACGCGCAGCATCCCCGTTCATTGCCCTGAACATGGCCGAACAGCTCCGACTCCATCAAGTCCTTGGGGATGGCGGCCATGTTCAGG                                                                                                <  8:85406/148‑1                                                                                                                                                  ATGGCCGAACAGCTCCGACTCCATCAAGTCCTTGGGGATGGCGGCCATGTTCAGGGCAATGTACGGGGATGCTGCGCGTGGGCTGTGCCGGTGCAGGGCGTGGGCCACCAGTTCTTTGCCGGTGCCGGACTCGCCGTTGATCAGCACGG  <  5:117464/149‑1                                                                                                                                                  ATGGCCGAACAGCTCCGACTCCATCAAGTCCTTGGGGATGGCGGCCATGTTCAGGGCAATGAACGGGGATGCTGCGCGTGGGCTGTGCCGGTGCAGGGCGTGGGCCAGCAGTTCTTTGCCGGTGCCGGACTC                   >  5:277929/1‑132                                                                                                                                                  ATGGCCGAACAGCTCCGACTCCATCAAGTCCTTGGGGATGGCGGCCATGTTCAGGGCAATGAACGGGGATGCTGCGCGTGGGCTGTGCCGGTGCAGGGCGTGGGCCACCAGTTCTTTGCCGGTGCCGGACTC                   <  6:277929/132‑1                                                                                                                                                  ATGGCCGAACAGCTCCGACTCCATCAAGTCCTTGGGGATGGCGGCCATGTTCAGGGCAATGAAAGGGGATGCTGCGCGTGGGCTGTGCAGGTGAAGGGCGTGGGCCACCAGTTCTTTGACTGTGCCTGACTCGCCGTTGATCAGCACGG  >  4:250066/1‑149                                                                                                                                                                                                                                                                                                        GGAGGTGTTCCGCGCCATCGGCCGCCTCAGCCACTCCAACATCACCGTGCTGATCAACGGCGAGTCCGGCACCGGCAAAGAACTGGTGGCCCACGCCCTGCACCGGCACAGCCCACGCGCAGCATCCCCGTTCATTGCCCTGAACATGGCCG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/5755333‑5755484 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑catggccgAACAGCTCCGACTCCATCAAGTCCTTGGGGATGGCGGCCATGTTCAGGGCAATGAACGGGGATGCTGCGCGTGGGCTGTGCCGGTGCAGGGCGTGGGCCACCAGTTCTTTGCCGGTGCCGGACTCGCCGTTGATCAGCACGG  <  NC_002947/5755518‑5755377

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.