| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_002947 | = 5755484 | 27 (0.520) | 3 (0.060) | 3/250 | NT | 10.1% | coding (598/1437 nt) | glnG | two‑component system DNA‑binding response regulator GlnL/GlnG |
| ? | NC_002947 | = 5755518 | 28 (0.570) | coding (632/1437 nt) | glnG | two‑component system DNA‑binding response regulator GlnL/GlnG | |||||
CGCGCCATCGGCCGCCTCAGCCACTCCAACATCACCGTGCTGATCAACGGCGAGTCCGGCACCGGCAAAGAACTGGTGGCCCACGCCCTGCACCGGCACAGCCCACGCGCAGCATCCCCGTTCATTGCCCTGAACATGGCCGCCATCCCCAAGGACTTGATGGAGTCGGAGCTGTTCGGCCATGAGAAAGGCGCCTTCACAGGTGCTGCCAACTTGCGTCGCGGCCGTTTCGAGCAGGCCGATGGTGGCACGCTGTTTCTCGACGAAATCGGGGACATGCCTGCCGACAC > NC_002947/5755343‑5755632 | cgcgCCATCGGCCGCCTCAGCCACTCCAACATCACCGTGCTGATCAACGGCGAGTCCGGCACCGGCAAAGAACTGGTGGCCCACGCCCTGCACCGGCACAGCCCACGCGCAGCATCCCCGTTCATTGCCCTGAACATGGCCGCCATcc < 3:95647/148‑1 (MQ=255)cgcgACATGGGCCGCCTCAGCCACTCCAACATCACCGTGCTGATCAACGGCGAGTCCGGCACCGGCAAAGAACTGGTTGCCCACGCCCTGCACCGGCACAGCCCTCGCGCAGCATCCCCGTTGATTGCCCTGAACATGGCCGCCATcc < 4:243731/148‑1 (MQ=255) ccATCGGCCGCCTCAGCCACTCCAACATCACCGTGCTGATCAACGGCGAGTCCGGCACCGGCAAAGAACTGGTGGCCCACGCCCTGCACCGGCACAGCCCACGCGCAGCATCCCCGTTCATTGCCCTGAACATGGCCGCCATCCCCAAg < 1:21677/149‑1 (MQ=255) aCTCCAACATCACCGTGCTGATCAACGGCGAGTCCGGCACCGGCAAAGAACTGGTGGCCCACGCCCTGCACCGGCACAGCCCACGCGCAGCATCCCCGTTCATTGCCCTGAACATGGCCGCCATCCCCAAGGACTTGATGGAGTCGGAg > 1:302842/1‑149 (MQ=255) cAACATCACCGTGCTGATCAACGGCGAGTCCGGCACCGGCAAAGAACTGGTGGCCCACGCCCTGCACCGGCACAGCCCACGCGCAGCATCCCCGTTCATTGCCCTGAACATGGCCGaacagctccgactccatcaagtccttggggatg > 8:88584‑M1/1‑116 (MQ=255) aTCACCGTGCTGATCAACGGCGAGTCCGGCACCGGCAAAGAACTGGTGGCCCACGCCCTGCACCGGCACAGCCCACGCGCAGCATCCCCGTTCATTGCCCTGAACATGGCCGCCATCCCCAAGGACTTGATGGAGTCGGAGc > 4:97230/1‑142 (MQ=255) aTCACCGTGCTGATCAACGGCGAGTCCGGCACCGGCAAAGAACTGGTGGCCCACGCCCTGCACCGGCACAGCCCACGCGCAGCATCCCCGTTCATTGCCCTGAACATGGCCGCCATCCCCAAGGACTTGATGGAGTCGGAGc < 3:97230/142‑1 (MQ=255) ccGTGCTGATCAACGGCGAGTCCGGCACCGGCAAAGAACTGGTGGCCCACGCCCTGCACCGGCACAGCCCACGCGCAGCATCCCCGTACATTGCCCTGAACATGGCCGCCATCCCCAAGGACTTGATGGAGTCGGAGCTGTTcggccat < 5:117464‑M2/149‑8 (MQ=255) ccGTGCTGATCAACGGCGAGTCAGGCACAGTCAAAGAACTGGTGGCCCACGCCCTTCACCTGCACAGCCCACGCGCAGCATCCCCTTTCATTGCCCTGAACATGGCCGCCATCCCCAAGGACTTGATGGAGTCGGAGCTGTTcggccat > 4:250066‑M2/1‑142 (MQ=255) cTGATCAACGGCGAGTCCGGCACCGGCAAAGAACTGGTGGCCCACGCCCTGCACCGGCACAGCCCACGCGCAGCATCCCCCTTCATTGCCCTGAACATGGCCGaacagctccgactccatcaagtccttggggatggcggccatgttca < 7:88584‑M1/149‑47 (MQ=255) tGATCAACGGCGAGTCCGGCACCGGCAAAGAACTGGTGGCCCACGCCCTGCACCGGCACAGCCCACGCGCAGCATCCCCGTTCATTGCCCTGAACATGGCCGCCATCCCCAAGGACTTGATGGAGTCGGAGCTGTTCGGCCATgaga > 6:65688/1‑147 (MQ=255) aTCAACGGCGAGTCCGGCACCGGCAAAGAACTGGTGGCCCACGCCCTGCACCGGCACAGCCCACGCGCAGCATCCCCGTTCATTGCCCTGAACATGGCCGaacagctccgactccatcaagtccttggggatggcggccatgttcagg < 8:85406‑M1/148‑49 (MQ=255) aTCAACGGCGAGTCCGGCACCGGCAAAGAACTGGTGGCCCACGCCCTGCACCGGCACAGCCCACGCGCAGCATCCCCGTTCATTGCCCTGAACATGGCCGCCATCCCCa > 7:31679/1‑109 (MQ=255) aTCAACGGCGAGTCCGGCACCGGCAAAGAACTGGTGGCCCACGCCCTGCACCGGCACAGCCCACGCGCAGCATCCCCGTTCATTGCCCTGAACATGGCCGCCATCCCCa < 8:31679/109‑1 (MQ=255) aaCGGCGAGTCCGGCACCGGCAAAGAACTGGTGGCCCACGCCCTGCACCGGCACAGCCCACGCGCAGCATCCCCGTTCATTGCCCTGAACATGGCCGCCATCCCCAAGGACTTGATGGAGTCGGAGCTGTTCGGCCATGAGAAAGgcgc < 5:55970/149‑1 (MQ=255) gAGTCCGGCACCGGCAAAGAACTGGTGGCCCACGCCCTGCACCGGCACAGCCCACGCGCAGCATCCCCGTTCATTGCCCTGAACATGGCCGCCATCCCCAAGGACTTGATGGAGTCGGAGCTGTTcggccat < 6:277929‑M2/132‑8 (MQ=255) gAGTCCGGCACCGGCAAAGAACTGCTGGCCCACGCCCTGCACCGGCACAGCCCACGCGCAGCATCCCCGTTCATTGCCCTGAACATGGCCGCCATCCCCAAGGACTTGATGGAGTCGGAGCTGTTcggccat > 5:277929‑M2/1‑125 (MQ=255) aGTCCGGCACCGGCAAAGAACTGGTGGCCCACGCCCTGCACCGGCACAGCCCACGCGCAGCATCCCCGTTCATTGCCCTGAACATGGCCGCCATCCCCAAGGACTTGATGGAGTCGGAGCTGTTCGGCCATGAGAAAGGCGCCTTcaca < 5:65688/149‑1 (MQ=255) tCCGGCACCGGCAAAGAACTGGTGGCCCACGCCCTGCACCGGCACAGCCCACGCGCAGCATCCCCGTTCATTGCCCTGAACATGGCCGCCATCCCCAAGGACTTGATGGAGTCGGAGCTGTTCGGCCATGAGAAAGGCGCCTTCACAgg > 1:221866/1‑149 (MQ=255) cggcaccggcaAAGAACTGGTGGCCCACGCCCTGCACCGGCACAGCCCACGCGCAGCATCCCCGTTCATTGCCCTGAACATGGCCGCCATCCCCAAGGACTTGATGGAGTCGGAGCTGTTCGGCCATGAGAAAGGCGCCTTCACAGGt < 5:48937/148‑1 (MQ=255) gcaAAGAACTGGTGGCCCACGCCCTGCACCGGCACAGCCCACGCGCAGCATCCCCGTTCATTGCCCTGAACATGGCCGCCATCCCCAAGGACTTGATGGAGTCGGAGCTGTTCGGCCATGAGAAAGGCGCCTTCACAGGTGCTGCCAAc > 6:144774/1‑149 (MQ=255) tggCCCACGCCCTGCACCGGCACAGCCCACGCGCAGCATCCCCGTTCATTGCCCTGAACATGGCCGCCATCCCCAAGGACTTGATGGAGTCGGAGCTGTTCGGCCATGAGAAAGGCGCCTTCACAGGTGCTGCCAACTTGCGTCGCGGc < 3:14039/149‑1 (MQ=255) gCCCTGCACCGGCACAGCCCACGCGCAGCATCCCCGTTCATTGCCCTGAACATGGCCGCCATCCCCAAGGACTTGATGGAGTCGGAGCTGTTCGGCCATGAGAAAGGCGCCTTCACAGGTGCTGCCAACTTGCGTCGCGGCCGTTTc > 4:155563/1‑147 (MQ=255) gCACAGCCCACGCGCAGCATCCCCGTTCATTGCCCTGAACATGGCCGCCATCCCCAAGGACTTGATGGAGTCGGAGCTGTTCGGCCATGAGAAAGGCGCCTTCACAGGTGCTGCCAACTTGCGTCGCGGCCGTTTCGAGCAGGCCGAtg > 7:94987/1‑149 (MQ=255) acaGCCCACGCGCAGCATCCCCGTTCATTGCCCTGAACATGGCCGCCATCCCCAAGGACTTGATGGAGTCGGAGCTGTTCGGCCATGAGAAAGGCGCCTTCACAGGTGCTGCCAACTTGCGTCGCGGCCGTTTCGAGCAGGCCGAtggt < 2:302842/149‑1 (MQ=255) cccACGCGCAGCATCCCCGTTCATTGCCCTGAACATGGCCGCCATCCCCAAGGACTTGATGGAGTCGGAGCTGTTCGGCCATGAGAAAGGCGCCTTCACAGGTGCTGCCAACTTGCGTCGCGGCCGTTTCGAGCAGGCCGATGGTGGCa > 8:55066/1‑149 (MQ=255) caTCCCCGTTCATTTCCCTGAACATGGCCGCCATCCCCAAGGACTTGATGGAGTCTGAGCTGTTCGGCCATGAGAAAGGCGCCTTCACAGGTGCTGCCAACTTGCGTCGCGGCCGTTTCGAGCAGGCCGATGGTGGCACGCTGTTtctc < 4:45066/149‑1 (MQ=255) ccGTTCATTGCCCTGAACATGGCCGCCATCCCCAAGGACTTGATGGAGTCGGAGCTGTTCGGCCATGAGAAAGGCGCCTTCACAGGTGCTGCCAACTTGCGTCGCGGCCGTTTCGAGCAGGCCGATGGTGGAACGCTGTTTCTcgacg > 3:166911/1‑148 (MQ=255) aTTGCCCTGAACATGGCCGCCATCCCCAAGGACTTGATGGAGTCGGAGCTGTTCGGCCATGAGAAAGGCGCCTTCACAGGTGCTGCCAACTTGCGTCGCGGCCGTTTCGAGCAGGCCGATGGTGGCACGCTGTTTCTCGACGAAATCg < 1:34410/148‑1 (MQ=255) ttGCCCTGAACATGGCCGCCATCCCCAAGGACTTGATGGAGTCGGAGCTGTTCGGCCATGAGAAAGGCGCCTTCACAGGTGCTGCCAACTTGCGTCGCGGCCGTTTCGAGCAGGCCGATGGTGGCACGCTGTTTCTCGACGAAATCggg < 6:117464/149‑1 (MQ=255) ccTGAACATGGCCGCCATCCCCAAGGACTTGATGGAGTCGGAGCTGTTcggccatgttcagggcaatgaacggggatgctgcgcgtgggctgtgccggtgcagggcgtgggccaccagttctttgccggtgccggactcgccgttgat < 8:85406‑M2/148‑101 (MQ=255) ccTGAACATGGCCGCCATCCCCAAGGACTTGATGGAGTCGGAGCTGTTCGGCCATGAGAAAGGCGCCTTCACAGGTGCTGCCAACTTGCGTCGCGGCCGTTTCGAGCAGGCCGATGGTGGCACGCTGTTTCTCGACGAAATCgg < 2:304393/144‑1 (MQ=255) ccTGAACATGGCCGCCATCCCCAAGGACTTGATGGAGTCGGAGCTGTTCGGCCATGAGAAAGGCGCCTTCACAGGTGCTGCCAACTTGCGTCGCGGCCGTTTCGAGCAGGCCGATGGTGGCACGCTGTTTCTCGACGAAATCgg > 1:304393/1‑144 (MQ=255) cTGAACATGGCCGCCATCCCCAAGGACTTGATGGAGTCGGAGCTGTTCGGCCATGAGAAAGGCGCCTTCACAGGTGCTGCCAACTTGCGTCGCGGCCGTTTCGAGCAGGCCGATGGTGGCACGCTGTTTCTCGACGAAATCGGGGACAt < 7:55066/149‑1 (MQ=255) tGAACATGGCCGCCATCCCCAAGGACTTGATGGAGTCGGAGCTGTTcggccatgttcagggcaatgaagggggatgctgcgcgtgggctgtgccggtgcagggcgtgggccaccagttctttgccggtgccggactcgccgttgatcag < 7:88584‑M2/149‑104 (MQ=255) tGAACATGGCCGCCATCCCCAAGGACTTGATGGAGTCGGAGCTGTTCGGCCATGAGAAAGGCGCCTTCACAGGTGCTGCCAACTTGCGTCGCGGCCGTTTCGAGCAGGCCGATGGTGGCACGCTGTTTCTCGACGAAATCGGGGACAtg > 4:75607/1‑149 (MQ=255) aTGGCCGaacagctccgactccatcaagtccttggggatggcggccatgttcagggcaatgtacggggatgctgcgcgtgggctgtgccggtgcagggcgtgggccaccagttctttgccggtgccggactcgccgttgatcagcacgg < 5:117464‑M1/149‑143 (MQ=255) aTGGCCGaacagctccgactccatcaagtccttggggatggcggccatgttcagggcaatgaacggggatgctgcgcgtgggctgtgccggtgcagggcgtgggccagcagttctttgccggtgccggactc > 5:277929‑M1/1‑7 (MQ=255) aTGGCCGaacagctccgactccatcaagtccttggggatggcggccatgttcagggcaatgaacggggatgctgcgcgtgggctgtgccggtgcagggcgtgggccaccagttctttgccggtgccggactc < 6:277929‑M1/132‑126 (MQ=255) aTGGCCGaacagctccgactccatcaagtccttggggatggcggccatgttcagggcaatgaaaggggatgctgcgcgtgggctgtgcaggtgaagggcgtgggccaccagttctttgactgtgcctgactcgccgttgatcagcacgg > 4:250066‑M1/1‑7 (MQ=255) cgccATCCCCAAGGACTTGATGGAGTCGGAGCTGTTCGGCCATGAGAAAGGCGCCTTCACAGGTGCTGCCAACTTGCGTCGCGGCCGTTTCGAGCAGGCCGATGGTGGCACGCTGTTTCTCGACGAAATCGGGGACATGCCTGCCGaca > 7:111366/1‑149 (MQ=255) gccATCCCCAAGGACTTGATGGAGTCGGAGCTGTTCGGCCATGAGAAAGGCGCCTTCACAGGTGCTGCCAACTTGCGTCGCGGCCGTTTCGAGCAGGCCGATGGTGGCACGCTGTTTCTCGACGAAATCGGGGACATGCCTGCCGacac < 6:1915/149‑1 (MQ=255) | CGCGCCATCGGCCGCCTCAGCCACTCCAACATCACCGTGCTGATCAACGGCGAGTCCGGCACCGGCAAAGAACTGGTGGCCCACGCCCTGCACCGGCACAGCCCACGCGCAGCATCCCCGTTCATTGCCCTGAACATGGCCGCCATCCCCAAGGACTTGATGGAGTCGGAGCTGTTCGGCCATGAGAAAGGCGCCTTCACAGGTGCTGCCAACTTGCGTCGCGGCCGTTTCGAGCAGGCCGATGGTGGCACGCTGTTTCTCGACGAAATCGGGGACATGCCTGCCGACAC > NC_002947/5755343‑5755632 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |