New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 5755484	27 (0.520)	3 (0.060)	3/250	NT	10.1%	coding (598/1437 nt)	glnG	two‑component system DNA‑binding response regulator GlnL/GlnG
	?	NC_002947	= 5755518	28 (0.570)					coding (632/1437 nt)	glnG	two‑component system DNA‑binding response regulator GlnL/GlnG

CCGTGCTGATCAACGGCGAGTCCGGCACCGGCAAAGAACTGGTGGCCCACGCCCTGCACCGGCACAGCCCACGCGCAGCATCCCCGTTCATTGCCCTGAACATGGCCGCCATCCCCAAGGACTTGATGGAGTCGGAGCTGTTCGGCCATGAGAAAGGCGCCTTCACAGGTGCTGCCAACTTGCGTCGCGGCCGTTTCGAGCAGGCCGATGGTGGCACGCTGTTTCTCGACGAAATCGGGGACATGCCTGCCGACACCCAGACCCGCCTGCTGCGTGTGCTGGC  >  NC_002947/5755377‑5755659                                                                                                                                              |                                                                                                                                              ccGTGCTGATCAACGGCGAGTCCGGCACCGGCAAAGAACTGGTGGCCCACGCCCTGCACCGGCACAGCCCACGCGCAGCATCCCCGTACATTGCCCTGAACATGGCCGCCATCCCCAAGGACTTGATGGAGTCGGAGCTGTTcggccat                                                                                                                                        <  5:117464‑M2/149‑8 (MQ=255) ccGTGCTGATCAACGGCGAGTCAGGCACAGTCAAAGAACTGGTGGCCCACGCCCTTCACCTGCACAGCCCACGCGCAGCATCCCCTTTCATTGCCCTGAACATGGCCGCCATCCCCAAGGACTTGATGGAGTCGGAGCTGTTcggccat                                                                                                                                        >  4:250066‑M2/1‑142 (MQ=255)       tGATCAACGGCGAGTCCGGCACCGGCAAAGAACTGGTGGCCCACGCCCTGCACCGGCACAGCCCACGCGCAGCATCCCCGTTCATTGCCCTGAACATGGCCGCCATCCCCAAGGACTTGATGGAGTCGGAGCTGTTCGGCCATgaga                                                                                                                                    >  6:65688/1‑147 (MQ=255)            aaCGGCGAGTCCGGCACCGGCAAAGAACTGGTGGCCCACGCCCTGCACCGGCACAGCCCACGCGCAGCATCCCCGTTCATTGCCCTGAACATGGCCGCCATCCCCAAGGACTTGATGGAGTCGGAGCTGTTCGGCCATGAGAAAGgcgc                                                                                                                             <  5:55970/149‑1 (MQ=255)                  gAGTCCGGCACCGGCAAAGAACTGGTGGCCCACGCCCTGCACCGGCACAGCCCACGCGCAGCATCCCCGTTCATTGCCCTGAACATGGCCGCCATCCCCAAGGACTTGATGGAGTCGGAGCTGTTcggccat                                                                                                                                        <  6:277929‑M2/132‑8 (MQ=255)                  gAGTCCGGCACCGGCAAAGAACTGCTGGCCCACGCCCTGCACCGGCACAGCCCACGCGCAGCATCCCCGTTCATTGCCCTGAACATGGCCGCCATCCCCAAGGACTTGATGGAGTCGGAGCTGTTcggccat                                                                                                                                        >  5:277929‑M2/1‑125 (MQ=255)                   aGTCCGGCACCGGCAAAGAACTGGTGGCCCACGCCCTGCACCGGCACAGCCCACGCGCAGCATCCCCGTTCATTGCCCTGAACATGGCCGCCATCCCCAAGGACTTGATGGAGTCGGAGCTGTTCGGCCATGAGAAAGGCGCCTTcaca                                                                                                                      <  5:65688/149‑1 (MQ=255)                     tCCGGCACCGGCAAAGAACTGGTGGCCCACGCCCTGCACCGGCACAGCCCACGCGCAGCATCCCCGTTCATTGCCCTGAACATGGCCGCCATCCCCAAGGACTTGATGGAGTCGGAGCTGTTCGGCCATGAGAAAGGCGCCTTCACAgg                                                                                                                    >  1:221866/1‑149 (MQ=255)                       cggcaccggcaAAGAACTGGTGGCCCACGCCCTGCACCGGCACAGCCCACGCGCAGCATCCCCGTTCATTGCCCTGAACATGGCCGCCATCCCCAAGGACTTGATGGAGTCGGAGCTGTTCGGCCATGAGAAAGGCGCCTTCACAGGt                                                                                                                   <  5:48937/148‑1 (MQ=255)                               gcaAAGAACTGGTGGCCCACGCCCTGCACCGGCACAGCCCACGCGCAGCATCCCCGTTCATTGCCCTGAACATGGCCGCCATCCCCAAGGACTTGATGGAGTCGGAGCTGTTCGGCCATGAGAAAGGCGCCTTCACAGGTGCTGCCAAc                                                                                                          >  6:144774/1‑149 (MQ=255)                                           tggCCCACGCCCTGCACCGGCACAGCCCACGCGCAGCATCCCCGTTCATTGCCCTGAACATGGCCGCCATCCCCAAGGACTTGATGGAGTCGGAGCTGTTCGGCCATGAGAAAGGCGCCTTCACAGGTGCTGCCAACTTGCGTCGCGGc                                                                                              <  3:14039/149‑1 (MQ=255)                                                   gCCCTGCACCGGCACAGCCCACGCGCAGCATCCCCGTTCATTGCCCTGAACATGGCCGCCATCCCCAAGGACTTGATGGAGTCGGAGCTGTTCGGCCATGAGAAAGGCGCCTTCACAGGTGCTGCCAACTTGCGTCGCGGCCGTTTc                                                                                        >  4:155563/1‑147 (MQ=255)                                                              gCACAGCCCACGCGCAGCATCCCCGTTCATTGCCCTGAACATGGCCGCCATCCCCAAGGACTTGATGGAGTCGGAGCTGTTCGGCCATGAGAAAGGCGCCTTCACAGGTGCTGCCAACTTGCGTCGCGGCCGTTTCGAGCAGGCCGAtg                                                                           >  7:94987/1‑149 (MQ=255)                                                                acaGCCCACGCGCAGCATCCCCGTTCATTGCCCTGAACATGGCCGCCATCCCCAAGGACTTGATGGAGTCGGAGCTGTTCGGCCATGAGAAAGGCGCCTTCACAGGTGCTGCCAACTTGCGTCGCGGCCGTTTCGAGCAGGCCGAtggt                                                                         <  2:302842/149‑1 (MQ=255)                                                                    cccACGCGCAGCATCCCCGTTCATTGCCCTGAACATGGCCGCCATCCCCAAGGACTTGATGGAGTCGGAGCTGTTCGGCCATGAGAAAGGCGCCTTCACAGGTGCTGCCAACTTGCGTCGCGGCCGTTTCGAGCAGGCCGATGGTGGCa                                                                     >  8:55066/1‑149 (MQ=255)                                                                               caTCCCCGTTCATTTCCCTGAACATGGCCGCCATCCCCAAGGACTTGATGGAGTCTGAGCTGTTCGGCCATGAGAAAGGCGCCTTCACAGGTGCTGCCAACTTGCGTCGCGGCCGTTTCGAGCAGGCCGATGGTGGCACGCTGTTtctc                                                          <  4:45066/149‑1 (MQ=255)                                                                                    ccGTTCATTGCCCTGAACATGGCCGCCATCCCCAAGGACTTGATGGAGTCGGAGCTGTTCGGCCATGAGAAAGGCGCCTTCACAGGTGCTGCCAACTTGCGTCGCGGCCGTTTCGAGCAGGCCGATGGTGGAACGCTGTTTCTcgacg                                                      >  3:166911/1‑148 (MQ=255)                                                                                          aTTGCCCTGAACATGGCCGCCATCCCCAAGGACTTGATGGAGTCGGAGCTGTTCGGCCATGAGAAAGGCGCCTTCACAGGTGCTGCCAACTTGCGTCGCGGCCGTTTCGAGCAGGCCGATGGTGGCACGCTGTTTCTCGACGAAATCg                                                <  1:34410/148‑1 (MQ=255)                                                                                           ttGCCCTGAACATGGCCGCCATCCCCAAGGACTTGATGGAGTCGGAGCTGTTCGGCCATGAGAAAGGCGCCTTCACAGGTGCTGCCAACTTGCGTCGCGGCCGTTTCGAGCAGGCCGATGGTGGCACGCTGTTTCTCGACGAAATCggg                                              <  6:117464/149‑1 (MQ=255)                                                                                               ccTGAACATGGCCGCCATCCCCAAGGACTTGATGGAGTCGGAGCTGTTcggccatgttcagggcaatgaacggggatgctgcgcgtgggctgtgccggtgcagggcgtgggccaccagttctttgccggtgccggactcgccgttgat                                           <  8:85406‑M2/148‑101 (MQ=255)                                                                                               ccTGAACATGGCCGCCATCCCCAAGGACTTGATGGAGTCGGAGCTGTTCGGCCATGAGAAAGGCGCCTTCACAGGTGCTGCCAACTTGCGTCGCGGCCGTTTCGAGCAGGCCGATGGTGGCACGCTGTTTCTCGACGAAATCgg                                               >  1:304393/1‑144 (MQ=255)                                                                                               ccTGAACATGGCCGCCATCCCCAAGGACTTGATGGAGTCGGAGCTGTTCGGCCATGAGAAAGGCGCCTTCACAGGTGCTGCCAACTTGCGTCGCGGCCGTTTCGAGCAGGCCGATGGTGGCACGCTGTTTCTCGACGAAATCgg                                               <  2:304393/144‑1 (MQ=255)                                                                                                cTGAACATGGCCGCCATCCCCAAGGACTTGATGGAGTCGGAGCTGTTCGGCCATGAGAAAGGCGCCTTCACAGGTGCTGCCAACTTGCGTCGCGGCCGTTTCGAGCAGGCCGATGGTGGCACGCTGTTTCTCGACGAAATCGGGGACAt                                         <  7:55066/149‑1 (MQ=255)                                                                                                 tGAACATGGCCGCCATCCCCAAGGACTTGATGGAGTCGGAGCTGTTcggccatgttcagggcaatgaagggggatgctgcgcgtgggctgtgccggtgcagggcgtgggccaccagttctttgccggtgccggactcgccgttgatcag                                        <  7:88584‑M2/149‑104 (MQ=255)                                                                                                 tGAACATGGCCGCCATCCCCAAGGACTTGATGGAGTCGGAGCTGTTCGGCCATGAGAAAGGCGCCTTCACAGGTGCTGCCAACTTGCGTCGCGGCCGTTTCGAGCAGGCCGATGGTGGCACGCTGTTTCTCGACGAAATCGGGGACAtg                                        >  4:75607/1‑149 (MQ=255)                                                                                                           cgccATCCCCAAGGACTTGATGGAGTCGGAGCTGTTCGGCCATGAGAAAGGCGCCTTCACAGGTGCTGCCAACTTGCGTCGCGGCCGTTTCGAGCAGGCCGATGGTGGCACGCTGTTTCTCGACGAAATCGGGGACATGCCTGCCGaca                              >  7:111366/1‑149 (MQ=255)                                                                                                            gccATCCCCAAGGACTTGATGGAGTCGGAGCTGTTCGGCCATGAGAAAGGCGCCTTCACAGGTGCTGCCAACTTGCGTCGCGGCCGTTTCGAGCAGGCCGATGGTGGCACGCTGTTTCTCGACGAAATCGGGGACATGCCTGCCGacac                             <  6:1915/149‑1 (MQ=255)                                                                                                              cATCCCCAAGGACTTGATGGAGTCGGAGCTGTTcggccatgttcagggcaatgaacggggatgctgcgcgtgggctgtgccggtgcagggcgtgggccaccagttctttgccggtgccggactcgccgttgatcagcacggtgatgttg                           >  8:88584‑M2/1‑33 (MQ=255)                                                                                                                   ccAAGGACTTGATGGAGTCGGAGCTGTTCGGCCATGAGAAAGGCGCCTTCACAGGTGCTGCCAACTTGCGTCGCGGCCGTTTCGAGCAGGCCGAtggtg                                                                        <  7:188429/99‑1 (MQ=255)                                                                                                                   ccAAGGACTTGATGGAGTCGGAGCTGTTCGGCCATGAGAAAGGCGCCTTCACAGGTGCTGCCAACTTGCGTCGCGGCCGTTTCGAGCAGGCCGAtggtg                                                                        >  8:188429/1‑99 (MQ=255)                                                                                                                   ccAAGGACTTGATGGAGTCGGAGCTGTTCGGCCATGAGAAAGGCGCCTTCACAGGTGCTGCCAACTTGCGTCGCGGCCGTTTCGAGCAGGCCGATGGTGGCACGCTGTTTCTCGACGAAATCGGGGACATGCCTGCCGACACCCAGAcc                      >  2:105145/1‑149 (MQ=255)                                                                                                                    cAAGGACTTGATGGAGTCGGAGCTGTTCGGCCATGAGAAAGGCGCCTTCACAGGTGCTGCCAACTTGCGTCGCGGCCGTTTAGAGCAGGCCGATGGTGGCACGCTGTTTCTCGACGAAATCGGGGACATGCCTGCCGACACCCAGAccc                     >  5:174515/1‑149 (MQ=255)                                                                                                                      aGGACTTGATGGAGTCGGAGCTGTTCGGCCATGAGAAAGGCGCCTTCACAGGTGCTGACAACTTGCGTCGCGGCCGTTTCGAGCAGGCCGATGGTGGCACGCTGTTTCTCGACGAAATCGGGGACATGCCTGCCGACACCCAGACCCGc                   <  4:166911/149‑1 (MQ=255)                                                                                                                          cTTGATGGAGTCGGAGCTGTTCGGCCATGAGAAAGGCGCCTTCACAGGTGCTGCCAACTTGCGTCGCGGCCGTTTCGAGCAGGCCGATGGTGGCACGCTGTTTCTCGACGAAATCGGGGACATGCCTGCCGACACCCAGACCCGCctgc               >  3:17531/1‑149 (MQ=255)                                                                                                                               tGGAGTCGGAGCTGTTCGGCCATGAGAAAGGCGCCTTCACAGGTGCTGCCAACTTGCGTCGCGGCCGTTTCGAGCAGGCCGATGGTGGCACGCTGTTTCTCGACGAAATCGGGGACATGCCTGCCGACACCCAGACCCGCCTGCTGCgt          <  2:221866/149‑1 (MQ=255)                                                                                                                                       gAGCTGTTCGGCCATGAGAAAGGCGCCTTCACAGGTGCTGCCAACTTGCGTCGCGGCCGTTTCGAGCAGGCCGATGGTGGCACGCTGTTTCTCGACGAAATCGGGGACATGCCTGCCGACACCCAGACCCGCCTGCTGCGTGTGCTGGc  <  3:155563/149‑1 (MQ=255)                                                                                                                                              |                                                                                                                                              CCGTGCTGATCAACGGCGAGTCCGGCACCGGCAAAGAACTGGTGGCCCACGCCCTGCACCGGCACAGCCCACGCGCAGCATCCCCGTTCATTGCCCTGAACATGGCCGCCATCCCCAAGGACTTGATGGAGTCGGAGCTGTTCGGCCATGAGAAAGGCGCCTTCACAGGTGCTGCCAACTTGCGTCGCGGCCGTTTCGAGCAGGCCGATGGTGGCACGCTGTTTCTCGACGAAATCGGGGACATGCCTGCCGACACCCAGACCCGCCTGCTGCGTGTGCTGGC  >  NC_002947/5755377‑5755659

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.