New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	5755682 =	43 (0.830)	3 (0.060)	3/254	NT	8.1%	coding (796/1437 nt)	glnG	two‑component system DNA‑binding response regulator GlnL/GlnG
	?	NC_002947	5755727 =	27 (0.540)					coding (841/1437 nt)	glnG	two‑component system DNA‑binding response regulator GlnL/GlnG

GGCGGTCGGCCAGGCGCGGAATATGGATACGGATCACGTTCAGGCGGTGGAACAAGTCCTCACGGAACTTGCCGGCCTGCACCAGTGACTCCAGGTTCTGGTGGGTGGCGGCGATGATGCGCACGTCGACCTTGACCGGCACATGGCCGCC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/5755832‑5755682 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gccgccACCCACCAGAACCTGGAGTCACTGGTGCAGGCCGGCAAGTTCCGTGAGGACTTGTTCCACCGCCTGAACGTGATCCGTATCCATATTCCGCGCCTGGCCGACC  >  NC_002947/5755727‑5755829                                                                                                                                                                                                                                                                GGCGGTCGGCCAGGCGCGGAATATGGATACGGATCACGTTCAGGCGGTGGAACAAGTCCTCACGGAACTTGCCGGCCTGCACCAGTGACTCCAGGTTCTGGTGGGTGGCGGCGATGATGCGCACGTCGACCTTGACCGGCACATGGCCG                                                                                                           <  8:62631/149‑1                                                                                                          TGGCGGCGATGATGCGCACGTCGACCTTGACCGGCACATGGCCGCCACCCACCAGAACCTGGAGTCACTGGTGCAGGCCGGCAAGTTCCGTGAGGACTTGTTCCACCGCCTGAACGTGATCCGTATCCATATTCCGCGCCTGGCCGACC  >  7:156324/1‑149                                                                                                            GCGGCGATGATGCGCACGTCGACCTTGACCGGCACATGGCCGCCACCCACCAGAACCTGGAGTCACTGGTGCAGGCCGGCAAGTTCCGTGAGGACTTGTTCCACCGCCTGAACGTGATCCGTATCCA                      >  3:33965/1‑127                                                                                                            GCGGCGATGATGCGCACGTCGACCTTGACCGGCACATGGCCGCCACCCACCAGAACCTGGAGTCACTGGTGCAGGCCGGCAAGTTCCGTGAGGACTTGTTCCACCGCCTGAACGTGATCCGTATCCA                      <  4:33965/127‑1                                                                                                                                                                                                                                                                GGCGGTCGGCCAGGCGCGGAATATGGATACGGATCACGTTCAGGCGGTGGAACAAGTCCTCACGGAACTTGCCGGCCTGCACCAGTGACTCCAGGTTCTGGTGGGTGGCGGCGATGATGCGCACGTCGACCTTGACCGGCACATGGCCGCC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/5755832‑5755682 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gccgccACCCACCAGAACCTGGAGTCACTGGTGCAGGCCGGCAAGTTCCGTGAGGACTTGTTCCACCGCCTGAACGTGATCCGTATCCATATTCCGCGCCTGGCCGACC  >  NC_002947/5755727‑5755829

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.