New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	5755682 =	43 (0.830)	3 (0.060)	3/254	NT	8.1%	coding (796/1437 nt)	glnG	two‑component system DNA‑binding response regulator GlnL/GlnG
	?	NC_002947	5755727 =	27 (0.540)					coding (841/1437 nt)	glnG	two‑component system DNA‑binding response regulator GlnL/GlnG

GCCTTCACAGGTGCTGCCAACTTGCGTCGCGGCCGTTTCGAGCAGGCCGATGGTGGCACGCTGTTTCTCGACGAAATCG‑GGGACATGCCTGCCGACACCCAGACCCGCCTGCTGCGTGTGCTGGCCGATGGCGAGTTCTACCGCGTGGGCGGCCATGTGCCGGTCAAGGTCGACGTGCGCATCAT‑CGCCGCCACCCACCAGAACCTGGAGTCACTGGTGCAGGCCGGCAAGTTCCGTGAGGACTTGTTCCACCGCCTGAACGTGATCCGTATCCATATTCCGCGCCTGG  >  NC_002947/5755535‑5755823                                                                                                                                                     |                                                                                                                                               gcCTTCACAGGTGCTGCCAACTTGCGTCGCGGCCGTTTCGAGCAGGCCGATGGTGGCACGCTGTTTCTCGACGAAATCG‑GGGACATGCCTGCCGACACCCAGACCCGCCTGCTGCGTGTGCTGGCCGATGGCGAGTTCTACCGCGTggg                                                                                                                                               <  5:144774/149‑1 (MQ=255) gcCTTCACAGGTGCTGCCAACTTGCGTCGCGGCCGTTTCGAGCAGGCCGATGGTGGCACGCTGTTTCTCGACCAAATCG‑GCGACAAGCCTGCCGACACCCAGACCAGCCTGCTGCCTGAACTGGCCGATGGCGAGTTCTACCGCGTggg                                                                                                                                               >  6:245122/1‑149 (MQ=255)    ttCACAGGTGCTGCCAACTTGCGTCGCGGCCGTTTCGAGCAGGCCGATGGTGGCACGCTGTTTCTCGACGAAATCG‑CGGACATGCCTGCCGACACCCAGACCCGCCTCCTGCGTGTGCTGGCCGATGGCGAGTTCTACCGCGTGggcgg                                                                                                                                            >  8:222920/1‑149 (MQ=255)      cacaGGTGCTGCCAACTTGCGTCGCGGCCGTTTCGAGCAGGCCGATGGTGGCACGCTGTTTCTCGACGAAATCG‑GGGACATGCCTGCCGACACCCAGACCCGCCTGCTGCGTGTGCTGGCCGATGGCGAGTTCTACCGCGTGggcggc                                                                                                                                           >  7:244414/1‑148 (MQ=255)      cacaGGTGCTGCCAACTTGCGTCGCGGCCGTTTCGAGCAGGCCGATGGTGGCACGCTGTTTCTCGACGAAATCG‑GGGACATGCCTGCCGACACCCAGACCCGCCTGCTGCGTGTGCTGGCCGATGGCGAGTTCTACCGCGTGggcggc                                                                                                                                           >  1:24809/1‑148 (MQ=255)       actggTGCTGCAAACTTGGGTCGCGGCGGTTTCTTGCAGGCCGATGGTGGCACGCTGTTTCTCGACGAAATCG‑GGGAGATGCCTGCCGAGACACAGACCCGCCTGCTGCGTGTGCTGGCCGATTGCTAGTTCTACGGCGTGGGCGGCCa                                                                                                                                         <  8:94987/146‑1 (MQ=255)       acaGGTGCTGCCAACTTGCGTCGCGGCCGTTTCGTGCAGGCCGATGGTGGCACGCTGTTTCTCGACGAAATCG‑GGGACATGCCTGCCGACACCCAGACCCGCCTGCTGCGTGTGCTGGCCGATGGCGAGTTCTACCGCGTGGGCGGCCa                                                                                                                                         >  7:258146/1‑149 (MQ=255)       acaGGTGCTGCCAACTTGCGTCGCGGCCGTTTCGAGCAGGCCGATGGTGGCACGCTGTTTCTCGACGAAATCG‑GGGACATGCCTGCCGACACCCAGACCCGCCTGCTGCGTGTGCTGGCCGATGGCGAGTTCTACCGCGTggg                                                                                                                                               >  1:112073/1‑143 (MQ=255)       acaGGTGCTGCCAACTTGCGTCGCGGCCGTTTCGAGCAGGCCGATGGTGGCACGCTGTTTCTCGACGAAATCG‑GGGACATGCCTGCCGACACCCAGACCCGCCTGCTGCGTGTGCTGGCCGATGGCGAGTTCTACCGCGTggg                                                                                                                                               <  2:112073/143‑1 (MQ=255)            tgctgcCAACTTGCGTCGCGGCCGTTTCGAGCAGGCCGATGGTGGCACGCTGTTTCTCGACGAAATCG‑GGGACATGCCTGCCGACACCCAGACCCGCCTGCTGCGTGTGCTGGCCGATGGCGAGTTCTACCGCGTGGGCGGCCATGTGc                                                                                                                                    >  1:95685/1‑149 (MQ=255)                gcCAACTTGCGTCGCGGCCGTTTCGAGCAGGCCGATGGTGGCACGCTGTTTCTCGACGAAATCG‑GGGACATGCCTGCCGACACCCAGACCCGCCTGCTGCGTATGCTGGCCGATGGCGAGTTCTACCGCGTGGGCGGCCATGTGCCGGt                                                                                                                                >  6:180676/1‑149 (MQ=255)                 ccAACTTGCGTCGCGGCCGTTTCGAGCAGGCCGATGGTGGCACGCTGTTTCTCGACGAAATCG‑GGGACATGCCTGCCGACACCCAGACCCGCCTGCTGCGTGTGCTGGCCGATGGCGAGTTCTACCGCGTGGGCGGCCATGTGCCGGt                                                                                                                                >  8:16816/1‑148 (MQ=255)                  cAACTTGCGTCGCGGCCGTTTCGAGCAGGCCGATGGTGGCACGCTGTTTCTCGACGAAATCG‑GGGACATGCCTGCCGACACCCAGACCCGCCTGCTGCGTGTGCTGGCCGATGGCGAGTTCTACCGCGTGGGCGGCCATGTGCCGGTCa                                                                                                                              <  2:24809/149‑1 (MQ=255)                  cAACTTGCGTCGCGGCCGTTTCGAGCAGGCCGATGGTGGCACGCTGTTTCTCGACGAAATCG‑GGGACATGCCTGCCGACACCCAGACCCGCCTGCTGCGTGTGCTGGCCGATGGCGAGTTCTACCGCGTGGGCGGCCATGTGCCGGTCa                                                                                                                              <  8:244414/149‑1 (MQ=255)                   aaCTTGCGTCGCGGCCGTTTCGAGCAGGCCGATGGTGGCACGCTGTTTCTCGACGAAATCG‑GGGACATGCCTGCCGACACCCAGACCCGCCTGCTGCGTGTGCTGGCCGATGGCGAGTTCTACCGCGTGGGCGGCCATGTGCCGGTCaa                                                                                                                             <  4:17531/149‑1 (MQ=255)                   aaCTTGCGTCGCGGCCGTTTCGAGCAGGCCGATGGTGGCACGCTGTTTCTCGACGAAATCG‑GGGACATGCCTGCCGACACCCAGACCCGCCTGCTGCGTGTGCTGGCCGATGGCGAGTTCTACCGCGTGGGCGGCCATGTGCCGGTCaa                                                                                                                             <  4:180524/149‑1 (MQ=255)                     cTTGCGTCGCGGCCGTTTCGAGCAGGCCGATGGTGGCACGCTGTTTCTCGACGAAATCG‑GGGACATGCCTGCCGACACCCAGACCCGCCTGCTGCGTGTGCTGGCCGATGGCGAGTTCTACCGCGTGGGCGGCCATGTGCCGGTCAAgg                                                                                                                           >  7:27483/1‑149 (MQ=255)                      ttGCGTCGCGGCCGTTTCGAGCAGGCCGATGGTGGCACGCTGTTTCTCGACGAAATCG‑GGGACATGCCTGCCGACACCCAGACCCGCCTGCTGCGTGTGCTGGCCGATGGCGAGTTCTACCGCGTGGGCGGCCATGTGCCGGTCAAGGt                                                                                                                          >  4:224273/1‑149 (MQ=255)                          gTCGCGGCCGTTTCGAGCAGGCCGATGGTGGCACGCTGTTTCTCGACGAAATCG‑GGGACATGCCTGCCGACACCCAGACCCGCCTGCTGCGTGTGCTGGCCGATGGCGAGTTCTACCGCGTGGGCGGCCATGTGCCGGTCAAGGTCGAc                                                                                                                      <  6:174515/149‑1 (MQ=255)                              cgGCCGTTTCGAGCAGGCCGATGGTGGCACGCTGTTTCTCGACGAAATCG‑GGGACATGCCTGCCGACACCCAGACCCGCCTGCTGCGTGTGCTGGCCGATGGCGAGTTCTACCGCGTGGGCGGCCATGTGCCGGTCAAGGTCGACGTgc                                                                                                                  <  7:16816/149‑1 (MQ=255)                               ggCCGTTGCGAGCCGGCCTAGGGTGCCAGGCTGTTTCTCTACTAATTCGCTACATATGCCTGCCGACACCCTGACCCGCCTGCTGCGTGTGCTGGCCGATGGCGAGTTCTACCGCGTGGGCGGCCATGTGCCGGTCAAGGTCGACGTgc                                                                                                                  <  1:105145/149‑1 (MQ=255)                                 ccGTTTCGAGCAGGCCGATGGTGGCACGCTGTTTCTCGACGAAATCG‑GGGACATGCCTGCCGACACCCAGACCCGCCTGCTGCGTGTGCTGGCCGATGGCGAGTTCTACCGCGTGGGCGGCCATGTGCCGGTCAAGGTCGACGTGCGca                                                                                                               >  5:150284/1‑149 (MQ=255)                                        gAGCAGGCCGATGGTGGCACGCTGTTTCTCGACGAAATCG‑GGGACATGCCTGCCGACACCCAGACCCGCCTGCTGCGTGTGCTGGCCGATGGCGAGTTCTACCGCGTGGGCGGCCATGTGCCGGTCAAGGTCGACGTGCGCATCAT‑cgc                                                                                                       >  2:114214/1‑149 (MQ=255)                                         aGCAGGCCGATGGTGGCACGCTGTTTCTCGACGAAATCG‑GGGACATGCCTGCCGACACCCACACCCGCCTGCTGCGTGTGCTGGCCGATGGCGAGTTCTACCGCGTGGGCGGCCATGTGCCGGTCAAGGTCGACGTGCGCATCAT‑cgcc                                                                                                      >  8:229671/1‑149 (MQ=255)                                           cAGGCCGATGGTGGCACGCTGTTTCTCGACGAAATCG‑GGGACATGCCTGCCGACACCCAGACCCGCCTGCTGCGTGTGCTGGCCGATGGCGAGTTCTACCGCGTGGGCGGCCATGTGCCGGTCAAGGTCGACGTGCGCATCAT‑cgccgc                                                                                                    <  6:150284/149‑1 (MQ=255)                                              ggtcggccaggcgcggaatatggatacggatcacgttcaggcggtggaacaagtcctcacggaacttgccggcctgcaccagtgactccaggttctggtgggtGGCGGCCATGTGCCGGTCAAGGTCGACGTGCGCATCAT‑CGCCGcca                                                                                                  >  7:156324‑M1/104‑149 (MQ=255)                                                  aTGGTGGCACGCTGTTTCTCGACGAAATCG‑GGGACATGCCTGCCGACACCCAGACCCGCCTGCTGCGTATGCTGGCCGATGGCGAGTTCTACCGCGTGGGCGGCCATGTGCCGGTCAAGGTCGACGTGCGCATCAT‑CGCCGccacccac                                                                                             <  5:180676/149‑1 (MQ=255)                                                           cGCTGTTTCTCGACGAAATCG‑GGGACATGCCTGCCGACACCCAGACCCGCCTGCTGCGTGTGCTGGCCGATGGCGAGTTCTACCGCGTGGGCGGCCATGTGCCGGTCAAGGTCGACGTGCGCATCAT‑CGCCGCCACCCACCAGAACCTg                                                                                    <  5:245122/149‑1 (MQ=255)                                                            gCTGTTTCTCGACGAAATCG‑GGGACATGCCTGCCGACACCCAGACCCGCCTGCTGCGTGTGCTGGCCGATGGCGAGTTCTACCGCGTGGGCGGCCATGTGCCGGTCAAGGTCGACGTGCGCATCAT‑CGCCGCCACCTACCAGAACCTgg                                                                                   <  8:258146/149‑1 (MQ=255)                                                             cTGTTTCTCGACGAAATCG‑GGGACATGCCTGCCGACACCCAGACCCGCCTGCTGCGTGTGCTGGCCGATGGCGAGTTCTACCGCGTGGGCGGCCATGTGCCGGTCAAGGTCGACGTGCGCATCAT‑CGCCGCCACCCACCAGAACCTGGa                                                                                  <  6:292116/149‑1 (MQ=255)                                                             cTGTTTCTCGACGAAATCG‑GGGACATGCCTGCCGACACCCAGACCCGCCTGCTGCGTGTGCTGGCCGATGGCGAGTTCTACCGCGTGGGCGGCCATGTGCCGGTCAAGGTCGACGTGCGCATCAT‑CGCCGCCACCCACCAGAACCTGGa                                                                                  <  8:27483/149‑1 (MQ=255)                                                             cTGTTTCTCGACGAAATCG‑GGGACATGCCTGCCGACACCCAGACCCGCCTGCTGCGTGTGCTGGCCGATGGCGAGTTCTACCGCGTGGGCGGCCATGTGCCGGTCAAGGTCGACGTGCGCATCAT‑CGCCGCCACCCACCAGAACCTGGa                                                                                  <  7:229671/149‑1 (MQ=255)                                                                  tggatacggatcacgttcaggcggtggaacaagtcctcacggaacttgccggcctgcaccagtgactccaggttctggtgggtGGCGGCCATGTGCCGGTCAAGGTCGACGTGCGCATCAT‑cgccgc                                                                                                    <  4:33965‑M1/44‑1 (MQ=255)                                                                  tggatacggatcacgttcaggcggtggaacaagtcctcacggaacttgccggcctgcaccagtgactccaggttctggtgggtGGCGGCCATGTGCCGGTCAAGGTCGACGTGCGCATCAT‑cgccgc                                                                                                    >  3:33965‑M1/84‑127 (MQ=255)                                                                      gacgaAATCG‑GGGACATGCCTGCCGACACCCAGACCCGCCTGCTGCGTGTGCTGGCCGATGGCGAGTTCTACCGCGTGGGCGGCCATGTGCCGGTCAAGGTCGACGTGCGCATCAT‑CGCCGCCACCCACCAGAACCTg                                                                                    <  1:103311/138‑1 (MQ=255)                                                                      gacgaAATCG‑GGGACATGCCTGCCGACACCCAGACCCGCCTGCTGCGTGTGCTGGCCGATGGCGAGTTCTACCGCGTGGGCGGCCATGTGCCGGTCAAGGTCGACGTGCGCATCAT‑CGCCGCCACCCACCAGAACCTg                                                                                    >  2:103311/1‑138 (MQ=255)                                                                      gacgaAATCG‑GGGACATGCCTGCCGACACCCAGACCCGCCTGCTGCGTGTGCTGGCCGATGGCGAGTTCTACCGCGTGGGCGGCCATGTGCCGGTCAAGGTCGACGTGCGCATCAT‑CGCCGCCACCCACCAGAACCTGGAGTCACt                                                                            <  8:7425/146‑1 (MQ=255)                                                                         gaAATCG‑GGGACATGCCTGCCGACACCCAGACCCGCCTGCTGCGTGTGCTGGCCGATGGCGAGTTCTACCGCGTGGGCGGCCATGTGCCGGTCAAGGTCGACGTGCGCATCAT‑CGCCGCCACCCACCAGAACCTGGAGTCACTGGTGCa                                                                      <  3:224273/149‑1 (MQ=255)                                                                                 gggACTTGCCTGCCGACTCCCAGACCCGCCTGCTGCGTGTGGTGGCCGATGGCGAGTTCTACCGCGTGGGCGGCCATGTGCCGGTCAAGGTCGACGTGCGCATCAT‑CGACGCCACCCACCAGAACCTGGAGTCACTGGTGCAGGCCGGc                                                               <  8:111366/149‑1 (MQ=255)                                                                                     cATGCCTGCCGACACCCAGACCCGCCTGCTGCGTGTGCTGGCCGATGGCGAGTTCTACCGCGTGGGCGGCCATGTGCCGGTCAAGGTCGACGTGCGCATCAT‑CGCCGCCACCCACCAGAACCTGGAGTCACTGGTGCAGGCCGGCAAGt                                                           <  2:4178/149‑1 (MQ=255)                                                                                                    ccAGACCCGCCTGCTGCGTGTGCTGGCCGATGGCGAGTTCTACCGCGTGGGCGGCCATGTGCCGGTCAAGGTCGACGTGCGCATCAT‑CGCCGCCACCCACCAGAACCTGGAGTCACTGGTGCAGGCCGGCAAGTTCCGTGAGGACTTGt                                            <  5:129128/149‑1 (MQ=255)                                                                                                    ccAGACCCGCCTGCTGCGTGTGCTGGCCGATGGCGAGTTCTACCGCGTGGGCGGCCATGTGCCGGTCAAGGTCGACGTGCGCATCAT‑CGCCGCCACCCACCAGAACCTGGAGTCACTGGTGCAGGCCGGCAAGTTCCGTGAGGACTTGt                                            >  1:55765/1‑149 (MQ=255)                                                                                                    ccAGACCCGCCTGCTGCGTGTGCTGGCCGATGGCGAGTTCTACCGCGTGGGCGGCCATGTGCCGGTCAAGGTCGACGTGCGCATCAT‑CGCCGCCACCCACCAGAACCTGGAGTCACTGGTGCAGGCCGGCAAGTTCCGTGAGGACTTGt                                            >  5:110448/1‑149 (MQ=255)                                                                                                      aGACCCGCCTGCTGCGTGTGCTGGCCGATGGCGAGTTCTACCGCGTGGGCGGCCATGTGCCTGTCAAGGTCGAGGTGCGCATCAT‑CGCCGCCACCCACCAGAACCTTGAGTCACTGGTGCAGGCCGGCAAGTTCCGTGAGGACTTGTTc                                          <  7:73395/149‑1 (MQ=255)                                                                                                        aCCCGCCTGCTGCGTGTGCTGGCCGATGGCGAGTTCTACCGCGTGGGCGGCCATGTGCCGGTCAAGGTCGACGTGCGCATCAT‑CGCCGCCACCCACCAGAACCTGGAGTCACTGGTGCAGGCCGGCAAGTTCCGTGAGGACTTGTTCCa                                        <  7:222920/149‑1 (MQ=255)                                                                                                                 ctgcGTGTGCTGGCCGATGGCGAGTTCTACCGCGTGGGCGGCCATGTGCCGGTCAAGGTCGACGTGCGCATCAT‑CGCCGCCACCCACCAGAACCTGGAGTCACTGGTGCAGGCCGGCAAGTTCCGTGAGGACTTGTTCCACCGCCTGaa                               <  2:95685/149‑1 (MQ=255)                                                                                                                            ggCCGATGGCGAGTTCTACCGCGTGGGCGGCCATGTGCCGGTCAAGGTCGACGTGCGCATCAT‑CGCCGCCACCCACCAGAACCTGGAGTCACTGGTGCAGGCCGGCAAGTTCCGTGAGGACTTGTTCCACCGCCTGAACGTGATCCGTa                    >  8:97549/1‑149 (MQ=255)                                                                                                                                      gAGTTCTACCGCGTGGCCGGCCATGTGCCGGTCAAGGTCGAGGTGCGCATCAT‑CGCCGCCACCCACCAGACCCTGGAGTCACTGGTGCAGGCCGGCAAGTTCCGTGAGGACTTGTACCACCGCCTGAACTGGATCCGTATCCATATTcc          >  4:315477/1‑149 (MQ=255)                                                                                                                                            tACCGCGTGGGCGGCCATGTGCCGGTCAAGGTCGACGTGCGCATCATGCGCCGCCACCCACCAGAACCTGGAGTCACTGGTGCAGGCCGGCAAGTTCCGTGAGGACTTGTTCCACCGCCTGAACGTGATCCGTATCCATATTCCGCGcc     >  1:71709/1‑149 (MQ=255)                                                                                                                                              ccGCGTGGGCGGCCATGTGCCGGTCAAGGTCGACGTGCGCATCAT‑CGCCGCCACCCACCAGAACCTGGAGTCACTGGTGCAGGCCGGCAAGTTCCGTGAGGACTTGTTCCACCGCCTGAACGTGATCCGTATCCATATTCCGCGCCt    <  6:110448/147‑1 (MQ=255)                                                                                                                                              ccGCGTGGGCGGCCATGTGCCGGTCAAGGTCGACGTGCGCATCAT‑CGCCGCCACCCACCAGAACCTGGAGTCACTGGTGCAGGCCGGCAAGTTCCGTGAGGACTTGTTCCACCGCCTGAACGTGATCCGTATCCATATTCCGCGCCTgg  >  2:222639/1‑149 (MQ=255)                                                                                                                                                     |                                                                                                                                               GCCTTCACAGGTGCTGCCAACTTGCGTCGCGGCCGTTTCGAGCAGGCCGATGGTGGCACGCTGTTTCTCGACGAAATCG‑GGGACATGCCTGCCGACACCCAGACCCGCCTGCTGCGTGTGCTGGCCGATGGCGAGTTCTACCGCGTGGGCGGCCATGTGCCGGTCAAGGTCGACGTGCGCATCAT‑CGCCGCCACCCACCAGAACCTGGAGTCACTGGTGCAGGCCGGCAAGTTCCGTGAGGACTTGTTCCACCGCCTGAACGTGATCCGTATCCATATTCCGCGCCTGG  >  NC_002947/5755535‑5755823

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.