New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	5755682 =	43 (0.830)	3 (0.060)	3/254	NT	8.1%	coding (796/1437 nt)	glnG	two‑component system DNA‑binding response regulator GlnL/GlnG
	?	NC_002947	5755727 =	27 (0.540)					coding (841/1437 nt)	glnG	two‑component system DNA‑binding response regulator GlnL/GlnG

GGCCGATGGTGGCACGCTGTTTCTCGACGAAATCGGGGACATGCCTGCCGACACCCAGACCCGCCTGCTGCGTGTGCTGGCCGATGGCGAGTTCTACCGCGTGGGCGGCCATGTGCCGGTCAAGGTCGACGTGCGCATCAT‑CGCCGCCACCCACCAGAACCTGGAGTCACTGGTGCAGGCCGGCAAGTTCCGTGAGGACTTGTTCCACCGCCTGAACGTGATCCGTATCCATATTCCGCGCCTGGCCGACCGCCGCGAGGATATCCCCGCCCTCGCCCGCCACTTCCT  >  NC_002947/5755579‑5755866                                                                                                                                                      |                                                                                                                                            ggtcggccaggcgcggaatatggatacggatcacgttcaggcggtggaacaagtcctcacggaacttgccggcctgcaccagtgactccaggttctggtgggtGGCGGCCATGTGCCGGTCAAGGTCGACGTGCGCATCAT‑CGCCGcca                                                                                                                                             >  7:156324‑M1/104‑149 (MQ=255)      aTGGTGGCACGCTGTTTCTCGACGAAATCGGGGACATGCCTGCCGACACCCAGACCCGCCTGCTGCGTATGCTGGCCGATGGCGAGTTCTACCGCGTGGGCGGCCATGTGCCGGTCAAGGTCGACGTGCGCATCAT‑CGCCGccacccac                                                                                                                                        <  5:180676/149‑1 (MQ=255)               cGCTGTTTCTCGACGAAATCGGGGACATGCCTGCCGACACCCAGACCCGCCTGCTGCGTGTGCTGGCCGATGGCGAGTTCTACCGCGTGGGCGGCCATGTGCCGGTCAAGGTCGACGTGCGCATCAT‑CGCCGCCACCCACCAGAACCTg                                                                                                                               <  5:245122/149‑1 (MQ=255)                gCTGTTTCTCGACGAAATCGGGGACATGCCTGCCGACACCCAGACCCGCCTGCTGCGTGTGCTGGCCGATGGCGAGTTCTACCGCGTGGGCGGCCATGTGCCGGTCAAGGTCGACGTGCGCATCAT‑CGCCGCCACCTACCAGAACCTgg                                                                                                                              <  8:258146/149‑1 (MQ=255)                 cTGTTTCTCGACGAAATCGGGGACATGCCTGCCGACACCCAGACCCGCCTGCTGCGTGTGCTGGCCGATGGCGAGTTCTACCGCGTGGGCGGCCATGTGCCGGTCAAGGTCGACGTGCGCATCAT‑CGCCGCCACCCACCAGAACCTGGa                                                                                                                             <  6:292116/149‑1 (MQ=255)                 cTGTTTCTCGACGAAATCGGGGACATGCCTGCCGACACCCAGACCCGCCTGCTGCGTGTGCTGGCCGATGGCGAGTTCTACCGCGTGGGCGGCCATGTGCCGGTCAAGGTCGACGTGCGCATCAT‑CGCCGCCACCCACCAGAACCTGGa                                                                                                                             <  8:27483/149‑1 (MQ=255)                 cTGTTTCTCGACGAAATCGGGGACATGCCTGCCGACACCCAGACCCGCCTGCTGCGTGTGCTGGCCGATGGCGAGTTCTACCGCGTGGGCGGCCATGTGCCGGTCAAGGTCGACGTGCGCATCAT‑CGCCGCCACCCACCAGAACCTGGa                                                                                                                             <  7:229671/149‑1 (MQ=255)                          gacgaAATCGGGGACATGCCTGCCGACACCCAGACCCGCCTGCTGCGTGTGCTGGCCGATGGCGAGTTCTACCGCGTGGGCGGCCATGTGCCGGTCAAGGTCGACGTGCGCATCAT‑CGCCGCCACCCACCAGAACCTg                                                                                                                               <  1:103311/138‑1 (MQ=255)                          gacgaAATCGGGGACATGCCTGCCGACACCCAGACCCGCCTGCTGCGTGTGCTGGCCGATGGCGAGTTCTACCGCGTGGGCGGCCATGTGCCGGTCAAGGTCGACGTGCGCATCAT‑CGCCGCCACCCACCAGAACCTg                                                                                                                               >  2:103311/1‑138 (MQ=255)                          gacgaAATCGGGGACATGCCTGCCGACACCCAGACCCGCCTGCTGCGTGTGCTGGCCGATGGCGAGTTCTACCGCGTGGGCGGCCATGTGCCGGTCAAGGTCGACGTGCGCATCAT‑CGCCGCCACCCACCAGAACCTGGAGTCACt                                                                                                                       <  8:7425/146‑1 (MQ=255)                             gaAATCGGGGACATGCCTGCCGACACCCAGACCCGCCTGCTGCGTGTGCTGGCCGATGGCGAGTTCTACCGCGTGGGCGGCCATGTGCCGGTCAAGGTCGACGTGCGCATCAT‑CGCCGCCACCCACCAGAACCTGGAGTCACTGGTGCa                                                                                                                 <  3:224273/149‑1 (MQ=255)                                    gggACTTGCCTGCCGACTCCCAGACCCGCCTGCTGCGTGTGGTGGCCGATGGCGAGTTCTACCGCGTGGGCGGCCATGTGCCGGTCAAGGTCGACGTGCGCATCAT‑CGACGCCACCCACCAGAACCTGGAGTCACTGGTGCAGGCCGGc                                                                                                          <  8:111366/149‑1 (MQ=255)                                        cATGCCTGCCGACACCCAGACCCGCCTGCTGCGTGTGCTGGCCGATGGCGAGTTCTACCGCGTGGGCGGCCATGTGCCGGTCAAGGTCGACGTGCGCATCAT‑CGCCGCCACCCACCAGAACCTGGAGTCACTGGTGCAGGCCGGCAAGt                                                                                                      <  2:4178/149‑1 (MQ=255)                                                       ccAGACCCGCCTGCTGCGTGTGCTGGCCGATGGCGAGTTCTACCGCGTGGGCGGCCATGTGCCGGTCAAGGTCGACGTGCGCATCAT‑CGCCGCCACCCACCAGAACCTGGAGTCACTGGTGCAGGCCGGCAAGTTCCGTGAGGACTTGt                                                                                       >  5:110448/1‑149 (MQ=255)                                                       ccAGACCCGCCTGCTGCGTGTGCTGGCCGATGGCGAGTTCTACCGCGTGGGCGGCCATGTGCCGGTCAAGGTCGACGTGCGCATCAT‑CGCCGCCACCCACCAGAACCTGGAGTCACTGGTGCAGGCCGGCAAGTTCCGTGAGGACTTGt                                                                                       <  5:129128/149‑1 (MQ=255)                                                       ccAGACCCGCCTGCTGCGTGTGCTGGCCGATGGCGAGTTCTACCGCGTGGGCGGCCATGTGCCGGTCAAGGTCGACGTGCGCATCAT‑CGCCGCCACCCACCAGAACCTGGAGTCACTGGTGCAGGCCGGCAAGTTCCGTGAGGACTTGt                                                                                       >  1:55765/1‑149 (MQ=255)                                                         aGACCCGCCTGCTGCGTGTGCTGGCCGATGGCGAGTTCTACCGCGTGGGCGGCCATGTGCCTGTCAAGGTCGAGGTGCGCATCAT‑CGCCGCCACCCACCAGAACCTTGAGTCACTGGTGCAGGCCGGCAAGTTCCGTGAGGACTTGTTc                                                                                     <  7:73395/149‑1 (MQ=255)                                                           aCCCGCCTGCTGCGTGTGCTGGCCGATGGCGAGTTCTACCGCGTGGGCGGCCATGTGCCGGTCAAGGTCGACGTGCGCATCAT‑CGCCGCCACCCACCAGAACCTGGAGTCACTGGTGCAGGCCGGCAAGTTCCGTGAGGACTTGTTCCa                                                                                   <  7:222920/149‑1 (MQ=255)                                                                    ctgcGTGTGCTGGCCGATGGCGAGTTCTACCGCGTGGGCGGCCATGTGCCGGTCAAGGTCGACGTGCGCATCAT‑CGCCGCCACCCACCAGAACCTGGAGTCACTGGTGCAGGCCGGCAAGTTCCGTGAGGACTTGTTCCACCGCCTGaa                                                                          <  2:95685/149‑1 (MQ=255)                                                                               ggCCGATGGCGAGTTCTACCGCGTGGGCGGCCATGTGCCGGTCAAGGTCGACGTGCGCATCAT‑CGCCGCCACCCACCAGAACCTGGAGTCACTGGTGCAGGCCGGCAAGTTCCGTGAGGACTTGTTCCACCGCCTGAACGTGATCCGTa                                                               >  8:97549/1‑149 (MQ=255)                                                                                         gAGTTCTACCGCGTGGCCGGCCATGTGCCGGTCAAGGTCGAGGTGCGCATCAT‑CGCCGCCACCCACCAGACCCTGGAGTCACTGGTGCAGGCCGGCAAGTTCCGTGAGGACTTGTACCACCGCCTGAACTGGATCCGTATCCATATTcc                                                     >  4:315477/1‑149 (MQ=255)                                                                                               tACCGCGTGGGCGGCCATGTGCCGGTCAAGGTCGACGTGCGCATCATGCGCCGCCACCCACCAGAACCTGGAGTCACTGGTGCAGGCCGGCAAGTTCCGTGAGGACTTGTTCCACCGCCTGAACGTGATCCGTATCCATATTCCGCGcc                                                >  1:71709/1‑149 (MQ=255)                                                                                                 ccGCGTGGGCGGCCATGTGCCGGTCAAGGTCGACGTGCGCATCAT‑CGCCGCCACCCACCAGAACCTGGAGTCACTGGTGCAGGCCGGCAAGTTCCGTGAGGACTTGTTCCACCGCCTGAACGTGATCCGTATCCATATTCCGCGCCt                                               <  6:110448/147‑1 (MQ=255)                                                                                                 ccGCGTGGGCGGCCATGTGCCGGTCAAGGTCGACGTGCGCATCAT‑CGCCGCCACCCACCAGAACCTGGAGTCACTGGTGCAGGCCGGCAAGTTCCGTGAGGACTTGTTCCACCGCCTGAACGTGATCCGTATCCATATTCCGCGCCTgg                                             >  2:222639/1‑149 (MQ=255)                                                                                                        tggcggcgatgatgcgcacgtcgaccttgaccggcacatggccgccACCCACCAGAACCTGGAGTCACTGGTGCAGGCCGGCAAGTTCCGTGAGGACTTGTTCCACCGCCTGAACGTGATCCGTATCCATATTCCGCGCCTGGCCGAcc                                       >  7:156324‑M2/47‑149 (MQ=255)                                                                                                          gcggcgatgatgcgcacgtcgaccttgaccggcacatggccgccACCCACCAGAACCTGGAGTCACTGGTGCAGGCCGGCAAGTTCCGTGAGGACTTGTTCCACCGCCTGAACGTGATCCGTATCCa                                                           <  4:33965‑M2/83‑1 (MQ=255)                                                                                                          gcggcgatgatgcgcacgtcgaccttgaccggcacatggccgccACCCACCAGAACCTGGAGTCACTGGTGCAGGCCGGCAAGTTCCGTGAGGACTTGTTCCACCGCCTGAACGTGATCCGTATCCa                                                           >  3:33965‑M2/45‑127 (MQ=255)                                                                                                          CGGCCATGTGCCGGTCAAGGTCGACGTGCGCATCAT‑CGCCGCCACCCACCAGAACCTGGAGTCACTGGTGCAGGCCGGCAAGTTCCGTGAGGACTTGTTCCACCGCCTGAACGTGATCCGTATCCATATTCCGCGCCTGGCCGAccgcc                                    <  8:62631‑M1/149‑1 (MQ=255)                                                                                                                  tgCCGGTCAAGGTCGACGTGCGCATCAT‑CGCCGCCACCCACCAGAACCTGGAGTCACTGGTGCAGGCCGGCAAGTTCCGTGAGGACTTGTTCCACCGCCTGAACGTGATCCGTATCCATATTCCGCGCCTGGCCGACCGCCGCGAGGa                             >  1:310117/1‑148 (MQ=255)                                                                                                                          aaGATCGACGTGCGCATCAT‑TGCCGCCACCCACCAGAACCTGGAGTCACTGGTGCAGGCCGGCAAGTTCCGTCAGGACTTGTTCCACCGCCTGAACGTGATCCGTATCCATATTCCGCGCCTGGCCGACCGCCGCGAGGATATCCCCGc                    >  5:312348/1‑149 (MQ=255)                                                                                                                                    ttcgcATCAT‑CGCCGCCACCCACCAGAACCTGGAGTCACTGGTGCAGGCCGGCAAGTTCCGTGAGGACTTGTTCCACCGCCTGAACGTGATCCGTATCCATATTCCGCGCCTGGCCGACCGCCGCGAGGATATCCCCGCCCTcgcccgc          <  2:71709/147‑1 (MQ=255)                                                                                                                                        catcat‑CGCCGCCACCCACCAGAACCTGGAGTCACTGGTGCAGGCCGGCAAGTTCCGTGAGGACTTGTTCCACCGCCTGAACGTGATCCGTATCCATATTCCGCGCCTGGCCGACCGCCGCGAGGATATCCCCGCCCTCGCCCGCCACt      >  1:11041/1‑149 (MQ=255)                                                                                                                                          tcat‑cGCCGCCACCCACCAGAACCTGGAGTCACTGGTGCAGGCCGGCAAGTTCCGTGAGGACTTGTTCCACCGCCTGAACGTGATCCGTATCCATATTCCGCGCCTGGCCGTCCGCCGCGAGGATATCCCCGCCCTCGCCCGCCACTTc    <  1:222639/149‑1 (MQ=255)                                                                                                                                            at‑cGCCGCCACCCACCAGAACCTGGAGTCACTGGTGCAGGCCGGCAAGTTCCGTGAGGACTTGTTCCACCGCCTGAACGTGATCCGTATCCATATTCCGCGCCTGGCCGACCGCCGCGAGGATATCCCCGCCCTCGCCCGCCACTTCCt  >  8:157401/1‑149 (MQ=255)                                                                                                                                                      |                                                                                                                                            GGCCGATGGTGGCACGCTGTTTCTCGACGAAATCGGGGACATGCCTGCCGACACCCAGACCCGCCTGCTGCGTGTGCTGGCCGATGGCGAGTTCTACCGCGTGGGCGGCCATGTGCCGGTCAAGGTCGACGTGCGCATCAT‑CGCCGCCACCCACCAGAACCTGGAGTCACTGGTGCAGGCCGGCAAGTTCCGTGAGGACTTGTTCCACCGCCTGAACGTGATCCGTATCCATATTCCGCGCCTGGCCGACCGCCGCGAGGATATCCCCGCCCTCGCCCGCCACTTCCT  >  NC_002947/5755579‑5755866

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.