New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 5780951	68 (1.310)	4 (0.080)	4/252	NT	5.5%	coding (1255/1794 nt)	cvrA	K(+)/H(+) antiporter NhaP
	?	NC_002947	= 5780984	72 (1.460)					coding (1288/1794 nt)	cvrA	K(+)/H(+) antiporter NhaP

CCCGCTGATGGCGGGCCTGCCAGACGCCCAGCTGTTCTTCAACCTGGCGTTCTTCATCGTGCTGGTGTCACTGCTGGTGCAGGGCACCAGTCTGCCGTGGGTGGCCAAGCTGCTGAAAGTGACGGTACCGCCAGACCCGGCGCCGATCTCCC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/5780800‑5780951 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑atctcccACTCGCTGGTGATGTGCACCTCAAGGGCGGAGCGGGAGATCGGCGCCGGGTCTGGCGGTACCGTCACTTTCAGCAGCTTGGCCACCCACGGCAGACTGGTGCCCTGCACCAGCAGTGACACCAGCACGATGAAGAACGCCAGGTTGAA  <  NC_002947/5780984‑5780837                                                                                                                                                                                                                                                                                                              CCCGCTGATGGCGGGCCTGCCAGACGCCCAGCTGTTCTTCAACCTGGCGTTCTTCATCGTGCTGGTGTCACTGCTGGTGCAGGGCACCAGTCTGCCGTGGGTGGCCAAGCTGCTGAAAGTGACGGTACCGCCAGACCCGGCGCCGATC                                                                                                                                                          <  8:11489/148‑1  CCGCTGATGGCGGGCCTGCCAGACGCCCAGCTGTTCTTCAACCTGGCGTTCTTCATCGTGCTGGTGTCACTGCTGGTGCAGGGCACCAGTCTGCCGTGGGTGGCCAAGCTGCTGAAAGTGACGGTACCGCCAGACCCGGCGCCGATCTC                                                                                                                                                        <  6:35833/149‑1   CGCTGATGGCGGGCCTGCCAGACGCCCAGCTGTTCTTCAACCTGGCGTTCTTCATCGTGCTGGTGTCACTGCTGGTGCAGGGCACCAGTCTGCCGTGGGTGGCCAAGCTGCTGAAAGTGACGGTACCGCCAGACCCGGCGCCGATCTCC                                                                                                                                                       <  8:220336/149‑1                  TGCCAGACGCCCAGCTGTTCTTCAACCTGGCGTTCTTCATCGTGCTGGTGTCACTGCTGGTGCAGGGCACCAGTCTGCCGTGGGTGGCCAAGCTGCTGAAAGTGACGGTACCACCAGACCCGGCGCCGATCTCCCACTCGCTGGTGATG                                                                                                                                        >  4:211172/1‑149                                        CAACCTGGCGTTCTTCATCGTGCTGGTGTCACTGCTGGTGCAGGGCACCAGTCTGCCGTGGGTGGCCAAGCTGCTGAAAGTGACGGTACCACCAGACCCGGCGCCGATCTCCCACTCGCTGGTGATGTGCACCTCAAGGGCGGAGCGG                                                                                                                   <  3:211172/148‑1                                                  TTCTTCATCGTGCTGGTGTCACTGCTGGTGCAGGGCACCAGTCTGCCGTGGGTGGCCAAGCTGCTGAAAGTGACGGTACCGCCAGACCCGGCGCCGATCTCCCACTCGCTGGTGATGTGCACCTCAAGGGCGGAGCGGGA                                                                                                                 >  7:86950/1‑140                                                  TTCTTCATCGTGCTGGTGTCACTGCTGGTGCAGGGCACCAGTCTGCCGTGGGTGGCCAAGCTGCTGAAAGTGACGGTACCGCCAGACCCGGCGCCGATCTCCCACTCGCTGGTGATGTGCACCTCAAGGGCGGAGCGGGA                                                                                                                 <  8:86950/140‑1                                                                                                                                                        CACTCGCTGGTGATGTGCACCTCAAGGGCGGAGCGGGAGATCGGCGCCGGGTCTGGCGGTACCGTCACTTTCAGCAGCTTGGCCACCCACGGCAGACTGGTGCCCTGCACCAGCAGTGACACCAGCACGATGAAGAACGCCAGGTTGAA  <  3:282043/149‑1                                                                                                                                                                                                                                                                                                              CCCGCTGATGGCGGGCCTGCCAGACGCCCAGCTGTTCTTCAACCTGGCGTTCTTCATCGTGCTGGTGTCACTGCTGGTGCAGGGCACCAGTCTGCCGTGGGTGGCCAAGCTGCTGAAAGTGACGGTACCGCCAGACCCGGCGCCGATCTCCC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/5780800‑5780951 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑atctcccACTCGCTGGTGATGTGCACCTCAAGGGCGGAGCGGGAGATCGGCGCCGGGTCTGGCGGTACCGTCACTTTCAGCAGCTTGGCCACCCACGGCAGACTGGTGCCCTGCACCAGCAGTGACACCAGCACGATGAAGAACGCCAGGTTGAA  <  NC_002947/5780984‑5780837

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.